Department of Biological Sciences, Plymouth Environmental Research Centre (PERC), University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK
Received June 23, 2000; accepted August 15, 2000
![]() |
ABSTRACT |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Key Words: copper; RAPD; DNA effects; genomic template stability; fitness parameters; Daphnia magna.
![]() |
INTRODUCTION |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
In this study, the effects of copper were evaluated at the population and molecular levels in an invertebrate species. Copper is essential to living systems, in part through its fundamental role in electron transport, respiration, growth, and development (Linder, 1991). This essential element is associated with key enzymes and/or proteins, such as superoxide dismutase (Atienzar et al., 1998
; Fridovich, 1995
), metallothioneins (Hamer, 1986
), and cytochrome c oxidase (Steffens et al., 1987
) which are well represented in invertebrates (Linder, 1991
). In vertebrate cells, copper has been implicated in the stabilization of chromosomes and it may be involved in transcription and/or specific transcription-stimulatory events affected by hormones (Linder, 1991
). However, numerous studies have also reported that copper induces toxicity (Conradi and Depledge, 1998
; Koivisto and Ketola, 1995
) including genotoxicity (Eichhorn and Shin, 1968
; Lloyd and Phillips, 1999
). For instance, the binding of copper to DNA bases unwinds the double-helix (Eichhorn and Shin, 1968
) and DNA damage can be generated. Lloyd and Phillips (1999) reported that the binding of copper to DNA is necessary for the generation of double-strand breaks, 8-hydroxydeoxyguanosine, and putative intrastrand cross-links in Fenton reactions.
The generation of genomic DNA profiles, using randomly primed polymerase chain reaction (PCR) protocols such as the arbitrarily primed PCR (AP-PCR) (Welsh and McClelland, 1990) and random amplified polymorphic DNA (RAPD) (Williams et al., 1990
) has proved valuable in many areas of biomedical research. RAPD and AP-PCR are powerful tools for gene mapping, population, pedigree analysis, phylogenetic studies, and strain identification (Grayson et al., 2000
; Liu et al., 1999
; Tinker et al., 1993
). In addition, their use in surveying genomic DNA for evidence of various types of damage and mutation suggest that they may potentially form the basis of novel genotoxicological assays for the detection of DNA damage and mutations (Atienzar, 2000
; Atienzar et al., 1999
, 2000a
; Becerill et al., 1999; Ionov et al., 1993
; Kohno et al., 1994
; Kubota et al., 1992
, 1995
; Lopez et al., 1999
; Peinado et al., 1992
; Savva, 1998
; Shimada and Shima, 1998
). Despite earlier criticism of the RAPD assay (Ellsworth et al., 1993
; Khandka et al., 1997
), subsequent reports have demonstrated that after rigorous optimization of the PCR parameters, the assay performs well, in terms of number of amplified bands, product yield, and clarity of the profiles, with a wide range of organisms including bacteria, plants, as well as invertebrate and vertebrate animals (Atienzar et al., 2000b
).
In the context of the information provided above, the objectives of this study have been to determine whether the RAPD assay could detect copper-induced DNA effects in the fresh water flea, Daphnia magna, under in vivo conditions, to measure fitness and Darwinian parameters in this key species for ecotoxicological studies, and to assess how these endpoints (i.e. changes in RAPD profile and fitness parameters) compare in terms of detection of toxicity.
![]() |
MATERIALS AND METHODS |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Preparation of test solutions.
Test solutions for acute and chronic exposures were prepared from stock solutions of copper (in the form of CuCl2, Sigma, Poole, UK) at a concentration of 3.90 and 0.24 mg/ml in distilled water, respectively, and were subjected to the same dilution (100 µl of the different solutions in 1 liter of M7 medium).
Toxicity tests.
The acute toxicity of copper was assessed by determining the LC50 of the chemical for D. magna over a period of 48 h. Freshly born neonates (less than 48 h) were exposed in replicate groups of 20, to concentrations of copper equivalent to 10, 25, 62.5, 156.25, or 390.62 µg/l. Animals were fed (see culture of the organism) during the test, and surviving animals were counted to determine the 48-h LC50 and its 95% confidence limit.
The chronic toxicity of copper to D. magna was assessed under the same experimental conditions as for the acute toxicity tests. Animals were exposed to copper concentrations of 15, 30, 60, 90, or 120 µg/l for 15 days. Surviving animals were counted on days 1, 3, 5, 8, 10, 12, and 15. Moribund, non-swimming animals were removed from the culture at regular intervals on and between counting days. Animals were stored at 80°C prior to DNA extraction and RAPD profiling. As M7 medium contains 2 µg/l copper, all concentrations previously mentioned in acute and chronic toxicity tests can be corrected by adding 2 to each of the values. However, as this is negligible, non-rectified values have been used throughout the paper.
Growth and reproductive measurements.
The length of every D. magna (apex to base) (except at the start of the experiment [day 1] where 20 D. magna were measured) surviving at days 1, 3, 5, 8, 10, 12, and 15 was measured by video capture and image analysis using a Quantimet 570 image analyzer (Cambridge Instruments, Cambridge, UK). Neonates were counted and recovered at daily intervals. The length of newborn neonates (generally 10 animals per replicate) released at first generation was also determined.
Calculation of fitness parameters.
The intrinsic rate of natural increase of the D. magna population, rm, was calculated using Lotka's equation: lxmxe-rmx = 1 (Krebs, 1978
; Lotka, 1925
). For a cohort of animals observed from birth through to death at regular intervals, x is the age in days, lx is the age-specific survival (number of living females on day x/number of females at start of life table); mx is the age-specific fecundity (number of newborn individuals produced on day x/number of living females on day x). The net reproductive rate (Ro) can be calculated using the following formula: Ro =
lxmx =
Ux with Ux being the realized fecundity. Minimum generation time (Tmin) and inter-brood time (Bt) represent the time between birth and the deposition of the first batch of offspring, and the time between clusters or broods, respectively.
Generation of D. magna DNA profiles using RAPD.
Total DNA from D. magna was extracted and purified using a conventional phenol/chloroform method as described in Atienzar et al. (1999). The extracted DNA was electrophoresed on 1.2% (w/v) agarose gels using a Tris-Borate-EDTA (TBE) buffer system (1X TBE = 90 mM Tris-base, 90 mM boric acid, and 2 mM EDTA) at 100 V for 2 h. The DNA concentration of each sample was determined by comparison with known concentrations of Lambda phage DNA (Sigma, Poole, UK). DNA profiles of D. magna were generated in RAPD reactions performed in a reaction volume of 25 µl containing 2 µM 10-mer primer (OPA9, OPB1, OPB5, OPB6, OPB7, OPB8, OPB10, OPB11, OPB12, OPB14, or OPB17, Operon Technologies, Southampton, UK; sequences for each primer can be obtained from the website at http://www.operon.com) 0.33 mM dNTP, 5.11 mM MgCl2, 20 ng DNA, 2.8 units of Thermus aquaticus (Taq) DNA polymerase and 1X reaction buffer (10 mM Tris-HCl, pH 8.8, 50 mM KCl, 0.08% Nonidet P40), and 2.5 µg bovine serum albumin. These primers were used because they allowed satisfactory RAPD profiles to be obtained with different species belonging to the bacterial, vegetal, and animal kingdoms and in particular with D. magna (Atienzar et al., 2000b). Thermal cycling parameters consisted of a 5-min denaturation (95°C) followed by 40 cycles of 1-min denaturation (95°C), 1-min annealing at 50°C, and a 1-min extension (74°C) (with the final extension period adjusted to 10 min). All PCR chemicals were from Immunogen International (Sunderland, UK) except when otherwise mentioned.
Amplified DNA was mixed with one-fifth volume of gel loading buffer (analytical grade water containing 25% ficoll, 0.25% bromophenol blue, and 0.25% xylene cyanol, Sigma, Poole, UK) and 1215 µl of this solution was loaded onto the agarose gel. PCR products were electrophoresed on 1.2% agarose gel using a TBE system buffer (see above) at 90 V for 6 h, stained with ethidium bromide (0.015% [v/v]), visualized under UV light, and photographed using a Polaroid CU5 camera system (Eastman Kodak, New York). The image of the gel was saved electronically for further analysis when necessary. The intensity of selected bands was determined using the Kodak Digital ScienceTM 1 D (Eastman Kodak, New York). For comparison, DNA molecular size marker (GeneRulerTM 100bp DNA ladder plus, Immunogen International, Sunderland, UK) was used. Bands visualized were from top to bottom: 3000, 2000, 1500, 1200, 1031, 900, 800, 700, 600, 500, 400, 300, 200, and 100 bp.
Estimation of genomic template stability and transformation of the data.
Each obvious change observed in RAPD patterns (disappearance of bands, appearance of new bands, and variation in band intensities) was given the arbitrary score of +1, and the average calculated for each experimental group of animals with 5 primers (OPA9, OPB7, OPB8, OPB10, and OPB17, representing approximately 50% of the primer used) which showed clear changes in RAPD. Primers which did not produce changes in RAPD profiles or which were too difficult to score were not used to calculate the genomic template stability (GTS). GTS (%) was calculated by the formula 100 (100a/n), where n is the number of bands detected in control DNA profiles and a the average number of changes in DNA profiles. To compare the sensitivity of each parameter (GTS, lx, mx, rm and Ro), changes in these values were calculated as a percentage of their control value (set to 100%).
Statistical analyses.
The 48-h LC50 value and the 95% confidence limit were calculated using the Logit method and the package software SPSS 6.1 for Windows. Differences among growth rates were calculated using multiple regression analysis (as in Conradi and Depledge, 1998). Briefly, the data were log10-transformed. As the number of surviving animals decreased with the increase in the toxic effect, the regressions were weighted with n1/2 (where n is the number of the surviving animals). Analysis of variance (ANOVA) was performed using the computer software package Statgraphics (Statgraphics plus for Windows version 3.1, Statistical Graphics, USA). Changes in GTS, key fitness parameters (lx, mx, Ro, and rm) and other parameters (longevity, maximum body size, maximum number of eggs/female, etc) were also statistically tested using ANOVA. The LSD (least significant differences) test was used to reveal statistical differences.
![]() |
RESULTS |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Changes in Growth, Reproduction and Mortality
Demographic trends for the populations of D. magna exposed to differing concentrations of copper are shown in Table 1. In the range 15120 µg/l copper, consistent reductions occurred in the maximum number of eggs per female and maximum body size. In contrast, the longevity and the number of broods were only affected at 120 µg/l of copper. D. magna exposed to the highest copper concentration could not survive for more than 10 days whereas animals from the other groups survived throughout the experiment (Table 1
, Fig. 1A
). The mean period for D. magna to become ovigerous was identical among groups, and animals exposed to gradual increases in copper concentrations displayed the same time between broods except for the animals exposed to 120 µg/l copper (Table 1
). The populations growing at 120 and 90 µg/l copper had a smaller body size than controls (p < 0.001), and there were no significant differences between control and other copper-exposed groups (Fig. 1B
). In addition, the sizes of sub-24-h juveniles at days 8 and 10 were similar among all groups (p < 0.01, data not shown). Finally, the total number of offspring was significantly reduced at 90 and 120 µg/l copper (p < 0.01; Fig. 1C
, Table 1
) compared to the control.
|
|
|
|
|
|
![]() |
DISCUSSION |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
The measure of molecular and population parameters present several advantages. First of all, in ecotoxicology, it is fundamental to accumulate data at different levels of biological organization in order to fully understand the effect of a toxicant on organisms. Secondly, the measure of some parameters at the population level facilitate the interpretation of the data at the molecular level. For instance, a significant reduction in growth correlates with a significant inhibition in DNA replication, suggesting that the extent of DNA damage may be important in the majority of the cells. In the present study, it seems that for the 2 highest copper concentrations, DNA replication was significantly reduced due to a higher level of DNA damage. On the other hand, as growth and reproduction displayed similar values compared to the control in the range 1560 µg/l copper, it could be assumed that DNA lesions were efficiently repaired and that DNA replication was not significantly inhibited.
With respect to copper toxicity, it has been reported that lethal effects on Daphnia occurred at 10 µg/l copper (Baird et al., 1991). In another study, Winner and Farell (1976) revealed that copper toxicity was increased at concentrations beyond 40 µg/l. However, the great variability among different studies makes direct comparisons difficult, owing to differences in medium quality, amounts of food, and the use of different clones of the same species (Koivisto and Ketola, 1995
; Meador, 1991
; Soares, 1992). In the present study, 15 µg/l copper stimulated reproduction, since age-specific fecundity was significantly higher than control, as previously reported in other studies (Dave, 1984
). However, the total number of neonates generated by the population of D. magna exposed to 0 and 15 µg/l copper were statistically identical, because the number of surviving animals decreased at 15 µg/l copper in comparison to the control and other groups (except for animals exposed to 120 µg/l copper). Thus, despite the significant increase in reproduction (mx) at 15 µg/l copper in comparison to the control, overall there was no beneficial effect in D. magna exposed to the lower copper concentration. The stimulation in reproduction can be explained by hormesis, an unspecific stimulation by a chemical or physical agent (Luckey, 1975
). The decrease in growth following sublethal copper exposure has also been demonstrated in various species of crustaceans (e.g. Conradi and Depledge, 1998). By attaining reproductive maturity at a smaller body size, D. magna are able to buffer the impact of lower body growth rate on the age at the first reproduction (Lynch, 1985
). In addition, the effect on growth was not due to a limitation in food levels as the size of the neonates at first reproduction was not affected (Enserink et al., 1993
) but was due to a direct toxic effect of copper.
The second objective of the study was to evaluate the potential of the RAPD method to detect copper-mediated DNA effects in D. magna. Recently, the RAPD technique has been successfully used to detect DNA effects induced by benzo(a)pyrene (Atienzar et al., 1999), mitomycin C (Becerril et al; 1999), ultraviolet radiation (Atienzar et al., 2000a
), and 17-ß-estradiol (estrogen)/4-n-nonylphenol (xenoestrogen) (Atienzar, 2000
; manuscript submitted) in aquatic species under in vitro and in vivo conditions. In this study, D. magna were exposed to copper because it is known to induce a range of DNA damage such as single- and double-strand breaks, modified bases, abasic sites, DNA-protein cross-links, and even bulky adducts representing intrastrand dimerization of adjacent purine bases (dimers) (Carmichael et al., 1992
; Lloyd and Phillips, 1999
). Copper, as with other transition metals, catalyses the Fenton type reduction of hydrogen peroxide to form hydroxyl radical, one of the most reactive radical oxygen species (Drouin et al., 1996
).
RAPD profiles detect alterations to genomic DNA through the use of arbitrarily primed PCR reactions. These effects include changes in oligonucleotide priming sites and variations in the activity of the Taq DNA polymerase. In the present study, variation in band intensity, disappearance of bands, and appearance of new PCR products occurred in profiles generated from the exposed organisms. Copper-induced DNA damage, e.g., Cu(I)-DNA complex, bulky adducts, oxidized bases, may significantly interfere with the PCR events. It has been reported that in naked double-stranded DNA, the transition from weak complex DNA-Cu(II) to strong complex DNA-Cu(I) (George et al., 1987) could induce conformational B-to-Z conversion in certain DNA fragments (Prütz et al., 1990
). In addition, dimers can alter the structure of the DNA (Hanawalt, 1998
; Wang et al., 1993). If so, such structural changes are likely to have a significant effect on the kinetics of PCR events. New PCR products can be amplified because some sites become accessible to the primers after structural change or because the same mutations have occurred in the genome. A loss of an amplicon can only be the outcome if the same structural changes occur in 7590% of the cells or if the same mutations arise in the same percentage of cells (Atienzar, 2000
). However, it is very unlikely that mutations occur in a large portion of cells, because most of the DNA damage (which can lead to mutations during DNA replication) will be efficiently repaired. DNA lesions such as bulky adducts are expected to have detrimental effects on RAPD profiles. Not only can they induce structural changes, but they can also reduce the polymerization of the DNA and/or block the Taq DNA polymerase (Nelson et al., 1996
), which will result in a decrease in band intensity, or alternatively, in a disappearance of amplified products in the case of extensive DNA damage (Atienzar, 2000
). As already mentioned, new PCR products may reveal a change in the DNA sequence due to point mutations and/or large rearrangements. A single point mutation within the primer site can generate significant changes in RAPD patterns (Williams et al., 1990
; Atienzar, 2000
). Nevertheless, the RAPD assay also has the potential to detect point mutations outside the priming site, as they can induce structural changes (Bowditch et al., 1993
). It is also well known that DNA repair and replication of damaged DNA can lead to point mutations (Livneh et al., 1993
). Due to the rapid growth of D. magna (Fig. 1B
) and the presence of DNA damage, it is very likely that mutations occurred after replication. Our preliminary results suggest that 1025% of the cells need to be affected by mutation and/or DNA damage to allow a visible change in the RAPD profile (Atienzar, 2000
). As "hot spot" interactions between DNA and copper have been reported in the literature (Prütz et al., 1990
; Rodriguez et al., 1995
), it is likely that hot spot mutations are generated following DNA replication.
Although DNA damage and mutations induced by genotoxins are likely to be the main factors affecting RAPD profiles, our preliminary results suggest that other factors may also contribute to changes in patterns but probably to a lesser extent (manuscript submitted; Atienzar, 2000). These factors could be responsible for some of the changes occurring in control RAPD patterns (see, for instance, Figs. 2A and 2D). Numerous studies have shown that gene expression correlates with a change in DNA structure (Kohwi and Kohwi-Shigematsu, 1991
; Wolffe and Hayes, 1999
), which in turn may induce changes in RAPD profiles. Other parameters such as genomic amplification and rearrangement, which are components of normal cellular development, may also influence RAPD profiles. There is also a possibility that DNA damage (e.g., 8-hydroxyguanine) in control animals could conceivably be induced as a result of the normal metabolic processes that maintain steady-state levels of genetic damage (Hanawalt, 1998
) and may therefore contribute to differential RAPD profiles. In addition, cell physiology, which is known to have a direct influence on DNA (Oshimura and Barrett, 1986
), may also have an effect on RAPD profiles. Therefore, the changes that occur in control RAPD patterns could be explained by a change in one or a combination of the factors previously mentioned between both replicates.
The RAPD technique clearly shows promise in the detection of pollutant-induced DNA effects. The main advantages of the RAPD method lie in its rapidity, applicability to any organism (since no information on the nucleotide sequence, cell cycle, or chromosome complement is required), and sensitivity to detect a wide range of DNA damage and mutations. However, RAPD is a qualitative method and the nature and amount of DNA effects can only be speculated. Thus, in the context of the evaluation of pollutant-induced DNA effects, a powerful approach would be to perform the RAPD method to obtain qualitative data that would give an overview of the DNA effects, and then to use more specific methods such as the 32P-postlabeling, DNA strand break measurements (comet assay), or cytogenetic assays to generate quantitative data.
In conclusion, fitness parameters and DNA effects are sensitive markers to detect copper-induced toxicity in D. magna. Thus, the RAPD assay to detect DNA effects in conjunction with other biomarkers from higher levels of biological organization would prove a powerful ecotoxicological tool.
![]() |
ACKNOWLEDGMENTS |
---|
![]() |
NOTES |
---|
![]() |
REFERENCES |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Atienzar, F. A. (2000). Development of the random amplified polymorphic DNA (RAPD) technique to measure the effects of genotoxins in aquatic organisms. Ph.D. Thesis (DXN034438), University of Plymouth, UK.
Atienzar, F. A., Conradi, M., Evenden, A. J., Jha, A. N., and Depledge, M. H. (1999). Qualitative assessment of genotoxicity using random amplified polymorphic DNA: Comparison of genomic template stability with key fitness parameters in Daphnia magna exposed to benzo[a]pyrene. Environ. Toxicol. Chem. 18, 22752282.[ISI]
Atienzar, F. A., Cordi, B., Donkin, M. E., Evenden, A. J., Jha, A. N., and Depledge, M. H. (2000a). Comparison of ultraviolet-induced genotoxicity detected by random amplified polymorphic DNA with chlorophyll fluorescence and growth in a marine macroalgae, Palmaria palmata. Aquat. Toxicol. 50, 112.[ISI][Medline]
Atienzar, F. A., Desor, D., Burnel, D., Keller, J. M., Lehr, P., and Vasseur, P. (1998). Effect of aluminum on superoxide dismutase activity in the adult rat brain. Biol. Trace Elem. Res. 65, 1930.[ISI][Medline]
Atienzar, F., Evenden, A., Jha, A., Savva, D., and Depledge, M. (2000b). Optimized RAPD analysis generates high-quality genomic DNA profiles at high annealing temperature. Biotechniques 28, 5254.[ISI][Medline]
Baird, D. J., Barber, I., Bradley, M., Soares, A. M. V. M., and Calow, P. (1991). A comparative study of genotype sensitivity to acute toxic stress using clones of Daphnia magna Straus. Ecotoxicol. Environ. Saf. 21, 257265.[ISI][Medline]
Becerril, C., Ferrero, M., Sanz, F., and Castano, A. (1999). Detection of mitomycin C-induced genetic damage in fish cells by use of RAPD. Mutagenesis 14, 449456.
Bowditch, B. M., Albright, D. G., Williams, J. G. K., and Braun, M. J. (1993). Use of randomly amplified polymorphic DNA markers in comparative genome studies. Methods Enzymol. 224, 294309.[ISI][Medline]
Carmichael, P. L., She, M. N., and Phillips, D. H. (1992). Detection and characterization by 32P-postlabelling of DNA adducts induced by a Fenton type oxygen radical generating system. Carcinogenesis 13, 11271135.[Abstract]
Conradi, M., and Depledge, M. H. (1998). Population responses of the marine amphipod Corophium volutator (Pallas, 1766) to copper. Aquat. Toxicol. 44, 3145.[ISI]
Couch, J. A., and Harshbarger, J. C. (1985). Effects of carcinogenic agents on aquatic animals: An environmental and experimental overview. Environ. Carcinog. Rev. 3, 63105.[ISI]
Dave, G. (1984). Effects of copper on growth, reproduction, survival, and hemoglobin in Daphnia magna. Comp. Biochem. Physiol. 78, 439443.[ISI]
Depledge, M. H. (1998). The ecotoxicological significance of genotoxicity in marine invertebrates. Mutat. Res. 399, 109122.[ISI][Medline]
Drouin, R., Rodriguez, H., Gao, S. W., Gebreyes, Z., Oconnor, T. R., Holmquist, G. P., and Akman, S. A. (1996). Cupric ion/ascorbate/hydrogen peroxide-induced DNA damage: DNA-bound copper ion primarily induces base modifications. Free Radic. Biol. Med. 21, 261273.[ISI][Medline]
Eichhorn, G. L., and Shin, Y. A. (1968). Interaction of metal ions with polynucleotides and related compounds: XII. The relative effect of various metal ions on DNA helicity. J. Am. Chem. Soc. 90, 73237328.[ISI][Medline]
Elendt, B. P., and Bias, W. R. (1990). Trace nutrient deficiency in Daphnia magna cultured in standard medium for toxicity testing: Effects of the optimization of culture conditions on life history parameters of Daphnia magna. Water Res. 24, 11571167.[ISI]
Ellsworth, D. L., Rittenhouse, K. D., and Honeycutt, R. L. (1993). Artifactual variation in randomly amplified polymorphic DNA banding patterns. BioTechniques 14, 214217.[ISI][Medline]
Enserink, L., Delahaye, M., and Maas, H. (1993). Reproductive strategy of Daphnia magna: Implications for chronic toxicity tests. Aquat. Toxicol. 25, 111123.[ISI]
Fridovich, I. (1995). Superoxide radical and superoxide dismutases. Annu. Rev. Biochem. 64, 97112.[ISI][Medline]
George, A. M., Sabovljev, S. A., Hart, L. E., Cramp, W. A., Harris, G., and Hornsey, S. (1987). DNA quaternary structure in the radiation sensitivity of human lymphocytes: A proposed role of copper. Brit. J. Cancer 55, 141144.[ISI][Medline]
Grayson, T. H., Atienzar, F. A., Alexander, S. M., Cooper, L. F., and Gilpin, M. L. (2000). Molecular diversity of Renibacterium salmoninarum isolates determined by randomly amplified polymorphic DNA analysis. Appl. Environ. Microbiol. 66, 435438.
Hamer, D. H. (1986). Metallothionein. Annu. Rev. Biochem. 55, 913951.[ISI][Medline]
Hanawalt, P. C. (1998). Genomic instability: Environmental invasion and the enemies within. Mutat. Res. 400, 117125.[ISI][Medline]
Ionov, Y., Peinado, M. A., Malkhosyan, S., Shibata, D., and Perucho, M. (1993). Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis. Nature 363, 558561.[ISI][Medline]
Jha, A. N. (1998). Use of aquatic invertebrates in genotoxicological studies. Mutat. Res. 399, 12.[ISI][Medline]
Jha, A. N., Cheung, V. V., Foulkes, M. E., Hill, S. J., and Depledge, M. H. (2000). Detection of genotoxins in the marine environment: Adoption and evaluation of an integrated approach using the embryo-larval stages of the marine mussel, Mytilus edulis. Mutat. Res. 464, 213228.[ISI][Medline]
Khandka, D. K., Tuna, M., Tal, M., Nejidat, A., and Golan-Goldhirsh, A. (1997). Variability in the pattern of random amplified polymorphic DNA. Electrophoresis 18, 28522856.[ISI][Medline]
Kohno, T., Morishita, K., Takano, H., Shapiro, D. N., and Yokota, J. (1994). Homozygous deletion at chromosome 2q33 in human small-cell lung carcinoma identified by arbitrarily primed PCR genomic fingerprinting. Oncogene 9, 103108.[ISI][Medline]
Kohwi, Y., and Kohwi-Shigematsu, T. (1991). Altered gene expression correlates with DNA structure. Genes Dev. 5, 25472554.[Abstract]
Koivisto, S., and Ketola, M. (1995). Effects of copper on life history traits of Daphnia pulex and Bosmina longirostris. Aquat. Toxicol. 32, 255269.[ISI]
Krebs, C. J. (1978). Ecology. Harper and Row, New York.
Kubota, Y., Shimada, A., and Shima, A. (1992). Detection of -ray-induced DNA damages in malformed dominant lethal embryos of the Japanese medaka (Oryzias latipes) using AP-PCR fingerprinting. Mutat. Res. 283, 263270.[ISI][Medline]
Kubota, Y., Shimada, A., and Shima, A. (1995). DNA alterations detected in the progeny of paternally irradiated Japanese medaka fish Oryzias latipes. Proc. Nat. Acad. Sci. U.S.A. 92, 330334.[Abstract]
Kurelec, B. (1993). The genotoxic disease syndrome. Mar. Environ. Res. 35, 341348.[ISI]
Linder, M. C. (1991). Biochemistry of Copper. Plenum Press, New York.
Liu, Z. J., Li, P., Argue, B. J., and Dunham, R. A. (1999). Random amplified polymorphic DNA markers: Usefulness for gene mapping and analysis of genetic variation of catfish. Aquaculture 174, 5968.[ISI]
Livneh, Z., Cohen-Fix, O., Skaliter, R., and Elizur, T. (1993). Replication of damaged DNA and the molecular mechanism of ultraviolet light mutagenesis. Crit. Rev. Biochem. Mol. Biol. 28, 465513.[Abstract]
Lloyd, D. R., and Phillips, D. H. (1999). Oxidative DNA damage mediated by copper(II), iron(II), and nickel(II) Fenton reactions: Evidence for site-specific mechanisms in the formation of double-strand breaks, 8-hydroxydeoxyguanosine, and putative intrastrand cross-links. Mutat. Res. 424, 2336.[ISI][Medline]
Lopez, A., Xamena, N., Cabre, O., Creus, A., Marcos, R., and Velazquez, A. (1999). Analysis of genomic damage in the mutagen-sensitive mus-201 mutant of Drosophila melanogaster by arbitrarily primed PCR (AP-PCR) fingerprinting. Mutat. Res. 435, 6375.[ISI][Medline]
Lotka, A. J. (1925). Elements of Physical Biology. Williams and Wilkins, Baltimore.
Luckey, T. D. (1975). Hormology with inorganic compounds. In Environmental Quality and Safety (F. Cowston and F. Korte, Eds.), pp. 81103. Georg Thieme, Stuttgart.
Lynch, M. (1985). Elements of mechanistic theory for the life history consequences of food limitation. Archiv. Hydrobiol. Ergebnisse Limnol. 21, 351362.
Meador, J. P. (1991). The interaction of pH, dissolved organic carbon, and total copper in the determination of ionic copper and toxicity. Aquat. Toxicol. 19, 1331.[ISI]
Nelson, J. R., Lawrence, C. W., and Hinkle, D. C. (1996). Thymine-thymine dimer bypass by yeast DNA polymerase . Science 272, 16461649.[Abstract]
Oshimura, M., and Barrett, J. C. (1986). Chemically induced aneuploidy in mammalian cells: Mechanisms and biological significance in cancer. Environ. Mutagen. 8, 129159.[ISI][Medline]
Peinado, M. A., Malkhosyan, S., Velazquez, A., and Perucho, M. (1992). Isolation and characterization of allelic losses and gains in colorectal tumors by arbitrarily primed polymerase chain reaction. Proc. Nat. Acad. Sci. U.S.A. 89, 1006510069.[Abstract]
Prütz, W. A., Butler, J., and Land, E. J. (1990). Interaction of copper(I) with nucleic acids. Int. J. Radiat. Biol. 58, 215234.[ISI][Medline]
Rodriguez, H., Drouin, R., Holmquist, G. P., Oconnor, T. R., Boiteux, S., Laval, J., Doroshow, J. H., and Akman, S. A. (1995). Mapping of copper hydrogen peroxide-induced DNA damage at nucleotide resolution in human genomic DNA by ligation-mediated polymerase chain reaction. J. Biol. Chem. 270, 1763317640.
Sadinski, W. J., Levay, G., Wilson, M. C., Hoffman, J. R., Bodell, W. J., and Anderson, S. L. (1995). Relationships among DNA adducts, micronuclei, and fitness parameters in Xenopus laevis exposed to benzo[a]pyrene. Aquat. Toxicol. 32, 333352.[ISI]
Savva, D. (1998). Use of DNA fingerprinting to detect genotoxic effects. Ecotoxicol. Environ. Saf. 41, 103106.[ISI][Medline]
Shimada, A., and Shima, A. (1998). Combination of genomic DNA fingerprinting into the medaka-specific locus test system for studying environmental germ-line mutagenesis. Mutat. Res. 399, 149165.[ISI][Medline]
Soares, A. M. V. M., Baird, D. J., and Calow, P. (1992). Interclonal variation in the performance of Daphnia magna Straus in chronic bioassays. Environ. Toxicol. Chem. 11, 14771483.[ISI]
Steffens, G. C. M., Biewald, R., and Buse, G. (1987). Cytochrome C oxidase is a 3 copper, 2 heme A protein. Eur. J. Biochem. 164, 295300.[Abstract]
Tinker, N. A., Fortin, M. G., and Mather, D. E. (1993). Random amplified polymorphic DNA and pedigree relationships in spring barley. Theor. Appl. Genet. 85, 976984.[ISI]
Wang, C. I., and Taylor, J. S. (1993). The trans-syn-I thymine dimer bends DNA by 22° and unwinds DNA by 15°. Chem. Res. Toxicol. 6, 519523.[ISI][Medline]
Welsh, J., and McClelland, M. (1990). Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18, 72137218.[Abstract]
Welsh, J., Ralph, D., and McClelland, M. (1995). DNA and RNA fingerprinting using arbitrary primed PCR. In PCR Strategies (M. A. Innis, D. H. Gelfand and J. J. Sninsky, Eds.), pp. 249276. Academic Press, San Diego.
Westerhoff, H. V., and Van Workum, M. (1990). Control of DNA structure and gene-expression. Biomed. Biochim. Acta 49, 839853.[ISI][Medline]
Williams, J. G. K., Kubelik, A. R., Livak, K. J., Rafalski, J. A., and Tingey, S. V. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18, 65316535.[Abstract]
Winner, R. W., and Farrell, M. P. (1976). Acute and chronic toxicity of copper to four species of Daphnia. J. Fish. Res. Board Canada 33, 16851691.[ISI]
Wolffe, A. P., and Hayes, J. J. (1999). Chromatin disruption and modification. Nucleic Acids Res. 27, 711720.
Würgler, F. E., and Kramers, P. G. N. (1992). Environmental effects of genotoxins (ecogenotoxicology). Mutagenesis 7, 321327.[Abstract]