1 Department of Oral Microbiology, Okayama University Graduate School of Medicine and Dentistry, Shikata-cho, Okayama 700-8525, Japan
2 Department of Bioresource Science, Ibaraki University, School of Agriculture, Ami, Ibaraki 300-0393, Japan
3 Department of Intercellular Communication, Graduate School of Biological Science, Nara Institute of Science and Technology, Ikoma 630-0101, Japan
4 Department of Bioinformatics and Genomics, Graduate School of Information Science, Nara Institute of Science and Technology, Ikoma 630-0101, Japan
5 Department of Operative Dentistry, Okayama University Graduate School of Medicine and Dentistry, Shikata-cho, Okayama 700-8525, Japan
Correspondence
Ryuji Shingaki
shingaki{at}md.okayama-u.ac.jp
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ABSTRACT |
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A table of proteins detected by LC/MS/MS in cells grown in microculture on CI and CI+KNO3 is available as supplementary data with the online version of this paper at http://mic.sgmjournals.org.
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INTRODUCTION |
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The L-form state has been observed and well characterized in the rod-shaped bacterium Bacillus subtilis (Burmeister & Hesseltine, 1968; Wyrick et al., 1973
; Gilpin & Patterson, 1976
; Gilpin et al., 1981
). Gilpin et al. (1973)
characterized the stable L-form of B. subtilis strain 168 morphologically and biochemically. They isolated a stable L-form mutant and demonstrated that the L-form cells lacked a cell wall by electron microscopic observation and the analysis of incorporation of isotope-labelled diaminopimelic acid as a cell wall component. They also showed that there was a difference between the membrane proteins of the bacillary form and the L-form.
Regarding cell shape change in B. subtilis, recent molecular genetic studies have revealed that mutations in genes associated with cell envelope synthesis resulted in morphological change, as expected. In a study using an IPTG-inducible mutant, Henriques et al. (1998) demonstrated that the rodA gene, which controls peptidoglycan synthesis, is essential for growth and rod shape maintenance. The defect in teichoic acid synthesis also results in morphological change (Honeyman & Stewart, 1989
; Mäuel et al., 1989
). In addition, it was reported that defects in MreB or Mbl proteins, which are assumed to form helical, actin-like filaments, lead to morphological change (Abhayawardhane & Stewart, 1995
; Jones et al., 2001
).
The existence of cell wall structure is one of the major differences between bacteria and animals; accordingly the inhibition of cell wall synthesis of bacteria is an important mode of action of antibiotics, and a large number of cell wall biosynthetic inhibitors have been developed. Here we report that B. subtilis cells grown under cover glass show a remarkable L-form-like morphological change, and describe changes in the whole-cell protein profile associated with this phenomenon. Mutants were studied to investigate the possible involvement of the bfmB locus in the changes in cell shape.
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METHODS |
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Whole-cell protein preparation.
Cells from 18 h cultures were collected and used for protein analysis. At this time, CI microcultures contained many burst cells. Cells grown on plates were suspended in 10 mM Tris/HCl buffer (pH 7·4) and then pelleted by centrifugation (5000 g, 5 min). Since the shape-changed cells grown under cover glass could not be pelleted completely, they were collected using a 0·1 µm filter spin-column (Ultrafree-MC, Amicon). Collected cells were resuspended in 27 µl BS (Bacillus subtilis) lysis buffer (20 mM Tris/HCl containing 10 % sucrose, pH 8·0) and then incubated at 37 °C for 30 min following the addition of 3 µl 10 mg lysozyme ml-1 and 3 µl 10 mM PMSF (serine protease inhibitor, Sigma). Lysed cell solution was mixed with SDS-PAGE conditioning buffer to a final volume of 60 µl and boiled for 3 min. Protein was quantified with the BCA Protein Assay Kit (Pierce), using bovine serum albumin (Sigma) as a standard. The amount of the proteins into each lane was adjusted to approximately 35 µg excluding lysozyme.
Protein identification.
Whole-cell proteins solubilized by SDS boiling were resolved by SDS-PAGE (12·5 % polyacrylamide gel) in Tris/glycine SDS running buffer (Laemmli, 1970) and visualized by Coomassie brilliant blue R-250 (CBB) staining. After excision from CBB-stained gels, proteins were reduced by dithiothreitol, alkylated by iodoacetamide and then in-gel digested with trypsin (Roche), according to the method of Shevchenko et al. (1996)
. Resulting peptides were eluted from the gel with several changes of extraction buffer (70 µl 70 % acetonitrile/5 % formic acid) and concentrated by evaporation. Peptides were diluted with 5 % formic acid and 50 % acetonitrile. We used liquid chromatography combined with tandem mass spectrometry (LC/MS/MS), as previously applied for the identification of B. subtilis spore proteins (Kuwana et al. 2002
), to analyse samples, using an LC-Q Deca mass spectrometer (Thermoquest) coupled with a Magic 2002 microcapillary nanoflow liquid chromatograph (Michrom Bioresources, USA). Proteins were identified using the TurboSEQUEST computer program (Thermoquest), a method to correlate tandem mass spectra of modified peptides to amino acid sequences (Yates et al., 1995
) in the protein database.
Construction of a gene deletion mutant and an IPTG-inducible mutant.
The deletion mutant of the bfmB gene locus, including three genes, bkdA1, bkdA2 and bkdB (see Fig. 6), was constructed with pDX-CAT. pDX-CAT was constructed by a slight modification of pDX-EM (Kadoya et al., 2002
) (the Emr marker was replaced by a Cmr marker). The PCR-amplified DNA fragments of the lpd and bmrR genes were ligated into MCS1 and MCS2, respectively, of pDX-CAT, and the bfmB gene was replaced by bgaBcat in the B. subtilis chromosome via a double-crossover event. The primers used for PCR amplification were as follows: 5'-TCCTCCGGTACCAATCGGAGACGTAATCG-3' and 5'-CTGTGGGTCGACGCTTCCTGATCAGTCAGC-3' for the lpd gene; and 5'-ATGGCGACTAGTCTTGACGGTCTCGTGTGC-3' and 5'-CCTCCACCGCGGCTCAACGCCTCCTACAG-3' for the bmrR gene. The bfmB gene-inducible mutant was constructed by pMutinNC integration (Morimoto et al., 2002
). An internal segment of the lpd gene was PCR-amplified and ligated into pMutinNC in E. coli, and then the plasmid was integrated into the B. subtilis chromosome via a Campbell-type crossover event. PCR amplification was done with the following primers: 5'-GCCGAAGCTTCCGGCGGTTATGTTGCGG-3' and 5'-CGCGGATCCTCAAAGTTGAGGGACACG-3'. After successful integration of the recombinant plasmid, the bfmB locus was placed downstream of the spac promoter (Fig. 6b, c
), and we were able to control its expression with IPTG in the constructed mutant.
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RESULTS |
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Proteins expressed in the shape-changed cells
Fig. 3 shows the protein profiles of the cells cultured on a CI agar plate and under cover glass. The expressed proteins differed in several ways between the two cultures. The proteins in the gel bands labelled 19 in Fig. 3
were analysed by LC/MS/MS. The proteins detected in only one lane are shown in bold in the table to the right of the gel. It may reflect the oxygen availability that the cells cultured on the agar plate expressed the vegetative catalase (KatA, spot O3) and the cells under cover glass expressed nitrate reductase (NarG, spot U1) for nitrate respiration and the enzymes for fermentation, including
-acetolactate decarboxylase (AlsD, spot U9),
-acetolactate synthase (AlsS, spots U2 and U9) and L-lactate dehydrogenase (LctE, spots U7, U8 and U9).
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Effect of adding KNO3 to the medium
We assumed that the differences in protein expression between the cells grown on plates and under cover glass were due to distinct culture conditions, especially differences in O2 availability. To investigate the proteins involved in cell shape change in more detail, we compared the protein expression between cover glass cultures under different conditions. Adding various substances to CI or Spizizen's medium showed that nitrate and nitrite repressed the cell shape change in the CI microcultures. Fig. 4 shows phase-contrast images of cells under cover glass cultured with or without KNO3. The addition of 0·01 % KNO3 almost repressed the cell shape change (Fig. 4b
) and the addition of 0·1 % KNO3 repressed it completely (Fig. 4c
), and also, no cell death was observed over 2 days of culture. NaNO2 (0·01 % and 0·1 %) also substantially repressed the cell shape change under cover glass culture (not shown). The fact that supplementation with
or
repressed the cell shape change indicates that the lack of electron acceptors may be a factor in morphological change.
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TEM observation of the shape-changed cells
Fig. 7 shows ultrathin section micrographs of normally grown cells and shape-changed cells. Cells were fixed with 2·5 % glutaraldehyde and 1 % osmium tetroxide with 0·1 M sucrose. The cells grown on the CI agar plate had thick Gram-positive-type wall structures (Fig. 7a, b
). The cells in the early stage of shape change had much thinner walls (Fig. 7c
). In addition, plasmolysis of the chemically fixed shape-changed cells was observed (Fig. 7c
). Fig. 7(d)
shows electron micrographs of a rapidly freeze-fixed cell from a culture in the late stage of shape change. This coccoid cell also showed a thin-walled structure.
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DISCUSSION |
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In this study, L-form-like morphological change under cover glass was only seen in CI medium, not in minimal medium or rich media. CI medium is composed of Spizizen's minimal salts with trace amounts of yeast extract and Casamino acids. The addition of only yeast extract or Casamino acids also made B. subtilis cells deform (data not shown), but the addition of 50 µg ml-1 of a single amino acid or a mixture of them into Spizizen's minimal salts did not. As shown in Fig. 3, the cells grown under cover glass on CI medium expressed nitrate reductase, which may indicate that at least a trace amount of nitrate was present in CI medium. However, B. subtilis cells cultured under cover glass on Spizizen's medium supplemented with 0·01 % or 0·1 % KNO3 did not show any shape change. Further study will be needed to clarify the conditions necessary for morphological changes in B. subtilis and also how the cells sense these conditions.
Protein analysis demonstrated differences in expressed proteins between bacillary cells and shape-changed cells, and a mutant of the bkd operon did not show the shape change in CI microculture. The products of this operon are involved in the metabolism of branched-chain amino acids and the biosynthesis of branched-chain carboxylic acids (Debarbouille et al., 1999). BkdA1, BkdA2 and BkdB, the products of the bfmB gene locus (the last three genes of the bkd operon), were frequently detected from shape-changed cells. Experiments with bfmB mutants (Fig. 6
) showed that the inactivation of bfmB resulted in the repression of cell shape change, and its induction gave rise to it again. The three bfmB genes code for the BCDH enzyme complex, which is involved in the biosynthesis of branched-chain fatty acids, the major components of the B. subtilis membrane (Kaneda, 1977
, 1991
). The physico-chemical effect of a methyl branch in a long acyl chain is similar to that of a cis double bond. The saturated/unsaturated fatty acid ratio of B. subtilis grown at 20 and 37 °C did not differ markedly (Kaneda, 1977
, 1991
), suggesting that the branched-chain fatty acids in B. subtilis function to maintain membrane fluidity at low temperature. Morphological and physiological studies have indicated the importance of membrane synthesis during sporulation for asymmetric septation and prespore engulfment (Piggot et al., 1994
). Bourdreaux & Freese (1981)
studied the sporulation rate and the fatty acid composition of a bfmB mutant grown with a wide range of fatty acid precursors. They reported that the bfmB mutant could grow but showed a 200-fold lower sporulation rate when the level of precursors is insufficient. In the present study, our bfmB mutant did not show a change in morphology to L-form-like spherical shapes. Hoischen et al. (1997)
compared the fatty acid composition of Streptomyces hygroscopicus walled cells and its stable L-form, and showed that the membranes of the L-form had a higher content of branched anteiso fatty acids than the membranes of the walled vegetative cells.
From our TEM observations, it appears that the cell shape change under cover glass was caused by thinning of the cell wall. Plasmolysis by 0·1 M sucrose was observed in the chemically fixed cells (Fig. 7c), as Schall et al. (1981)
observed in lysozyme-treated cells of Bacillus licheniformis. The phenomena we have observed may be discussed from the aspect of the process of autolysis. To investigate whether the death of the cells observed in the later stages of microculture was due to osmotic damage or some endogeneous process, we will perform a detailed study including cultures with osmotic stabilizers.
It is not known whether the conversion to the cell-wall-deficient form is an adaptation state for some specialized environments. L-form bacteria have often been observed in or isolated from clinical specimens (Domingues & Woody, 1997; Mattman, 2001b
). Mammals have developed a host defence system against micro-organisms by sensing their surface materials and recognizing them as xenobiotics. For the bacteria, removing the cell wall components may contribute to the evasion from host defence systems and the intracellular survival if they are able to live without cell wall structures.
The present study indicated that there might be a regulatory system for cell wall biosynthesis in response to environmental conditions in B. subtilis. Understanding the mechanisms and regulation of cell shape change in bacteria may lead to the development of novel antibiotics.
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ACKNOWLEDGEMENTS |
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A part of this work was supported by a Grant-in-Aid for Scientific Research (no. 15790222) from The Ministry of Education, Science, Sports and Culture of Japan.
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Received 24 January 2003;
revised 4 April 2003;
accepted 16 May 2003.
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