Swammerdam Institute for Life Sciences, University of Amsterdam, Nieuwe Achtergracht 166, 1018 WV Amsterdam, The Netherlands1
Author for correspondence: Klaas J. Hellingwerf. Tel: +31 20 5257055. Fax: +31 20 5257056. e-mail: K.Hellingwerf{at}chem.uva.nl
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ABSTRACT |
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Keywords: transmembrane signalling, kinase/phosphatase state
Abbreviations: G6P, glucose 6-phosphate; HPK, histidine-protein kinase; ISO, inside-out; RR, response-regulator; RSO, right-side-out
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INTRODUCTION |
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In Escherichia coli, 29 HPK/RR pairs have been identified (Mizuno, 1997 ). One of these is the UhpBUhpA couple (Weston & Kadner, 1988
). UhpB is a membrane-bound sensor kinase, with the notable feature that it contains eight putative transmembrane helices (Island et al., 1992
) instead of four for the KdpD sensor (Zimmann et al., 1995
) and two for the other functionally characterized membrane-bound HPKs in E. coli (Williams & Stewart, 1999
). Furthermore, a second intrinsic membrane protein, UhpC, is required to sense the extracellular stimulus for this system, the presence of glucose 6-phosphate (G6P) in the periplasm. Subsequently, UhpC activates UhpB, presumably by inducing a conformational change in the latter (Island & Kadner, 1993
; Island et al., 1992
; Weston & Kadner, 1988
; Wright et al., 2000
). This uncommon form of transmembrane signalling then activates the typical phosphoryl transfer reactions inherent to a two-component signal transduction pathway. The cytoplasmic part of UhpB contains the characteristic HPK/transmitter sequence motifs, i.e. the H-box, as well as the N- and G-box in the ATP-binding kinase domain (for a recent comparison see Kim & Forst, 2001
). Autophosphorylation of UhpB on the conserved histidine (His-313) may occur in a (homo)dimeric structure, with one kinase monomer catalysing phosphorylation of the other (i.e. in trans), as has been shown for other HPKs (Dutta et al., 1999
; Ninfa et al., 1993
). The RR UhpA, which is composed of a receiver domain that belongs to the RC1 subfamily of receiver domains (Grebe & Stock, 1999
) and an output domain belonging to the FixJ/NarL subfamily (Parkinson & Kofoid, 1992
), becomes activated by phosphorylation of Asp-54. Phosphorylated UhpA exhibits enhanced affinity for specific target sequences in the uhpT promoter region (Dahl et al., 1997
; Merkel et al., 1992
), through which it can stimulate UhpT expression. The UhpT transporter enables E. coli to take up a broad range of organophosphate compounds from its environment, which can be used as carbon and energy source (Dietz, 1976
). Nevertheless, UhpT expression is exclusively induced by extracellular G6P (Winkler, 1970
), because of the specificity of UhpC (Goldenbaum & Farmer, 1980
).
The uhpABCT operon has been extensively studied for more than 30 years, with regard to its characteristics of induction, regulation of uhpT transcription by UhpA, UhpB and UhpC, and specificity and kinetics of transport by UhpT (see Kadner, 1995 , for a review). Recently, the interaction of the transmitter domain of UhpB with UhpA has been described in detail (Wright & Kadner, 2001
; Wright et al., 2000
). Here we demonstrate the G6P-induced transmembrane signal transfer through the UhpBC complex in an in vitro system, which results in UhpB autophosphorylation and subsequent phosphoryl transfer to UhpA. We have observed that G6P increases the kinase/phosphatase ratio in the UhpBC complex, thereby generating phosphorylated UhpA. Nevertheless, G6P does not seem to suppress the default phosphatase-on state of UhpB.
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METHODS |
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Purification of His6-UhpA and His6-UhpB'.
His6-tagged recombinant proteins were isolated from E. coli M15 cells (Qiagen), transformed with pREP4 (Qiagen) and either pQE30uhpA or pQE30uhpB', after growth in LuriaBertani medium (Sambrook et al., 1989 ) at 37 °C and induction with IPTG (1 mM). The proteins were purified by nickel chelate affinity chromatography using a Ni-NTA resin (Qiagen), according to the QIAexpressionist manual (Qiagen). Purification under non-denaturing conditions resulted in a highly concentrated, soluble His6-UhpA fraction, whereas overproduced His6-UhpB' largely ended up in the insoluble fraction, due to the formation of inclusion bodies. His6-UhpB' was purified from this fraction under denaturing conditions with 8 M urea. The resulting (dialysed) product was subsequently only used to raise antiserum. Final protein preparations were
95% pure, as analysed on SDS-PAGE. Protein concentrations were determined using the Bradford assay (Bio-Rad) with BSA as a standard. Proteins were stored in small aliquots at -20 °C.
Isolation of inside-out membrane (ISO) vesicles.
For preparation of UhpBC-enriched- and UhpBC-lacking- (i.e.empty) membrane vesicles, E. coli RK1448 transformed with plasmid pRK18 [uhp (A) (BC) + (
T) in pBR322] and E. coli RK5000 (
uhpABCT) were used, respectively. Strains and plasmid (Weston & Kadner, 1988
) were kindly provided by R. J. Kadner (University of Virginia, Charlottesville, USA). Cell cultures were grown aerobically in LuriaBertani medium at 37 °C to an OD600 of
3. Cells were harvested by centrifugation (20 min at 5000 g) at 4 °C, washed once with ice-cold buffer A (100 mM Tris/HCl pH 7·4; 5 mM EDTA; 10%, v/v, glycerol), and resuspended in 0·01 vol. buffer A with 1 mM PMSF. The cell suspension was passed through a French pressure cell twice (12000 p.s.i.; 82·8 MPa). Cell debris was subsequently removed by centrifugation (twice, 20 min at 20000 g). The resulting supernatant was centrifuged at 180000 g for 90 min, to collect the membrane fraction. This membrane pellet was washed and resuspended in buffer B (50 mM HEPES pH 7·8; 2 M KCl; 1 mM EDTA; 10 mM ß-mercaptoethanol; 1 mM PMSF; 10%, v/v, glycerol) and sedimented again (45 min at 180000 g). The wash-step was repeated with membrane storage buffer (buffer B without 2 M KCl), after which the pellet was resuspended in a small volume (usually 400 µl pellet per litre of original culture). This membrane vesicle fraction was frozen in liquid nitrogen and stored at -80 °C in small aliquots. The protein concentration in these samples was estimated using the Bradford assay (Bio-Rad) with BSA as a standard and UhpB enrichment was confirmed and quantified by Western blotting, using a polyclonal antiserum raised against His6-UhpB'.
In vitro phosphorylation reactions.
To assay autophosphorylation activity in membranes in which UhpBC was either enriched or absent, samples were incubated with [-32P]ATP (ICN; stock 7000 Ci mmol-1; 259 TBq mmol-1) in a reaction mixture containing 50 mM Tris/HCl pH 8·0, 5 mM MgCl2, 50 mM KCl, 0·5 mM EDTA, 1 mM DTT, 10% (v/v) glycerol (and G6P). Before initiating the reaction with ATP (usually 50 or 100 µM, 1025 Ci mmol-1), the vesicles (with an ISO membrane orientation: Futai & Tanaka, 1975
) were made permeable for G6P (Boehringer Mannheim) by freezing the reaction mixture in liquid nitrogen, followed by thawing on ice.
To assay phosphoryl transfer to UhpA, His6-UhpA was added to the autophosphorylation mixture (now at pH 7·5) after 23 min incubation with [-32P]ATP.
To assay phosphatase activity (in UhpBC-enriched membranes) towards PUhpA, His6-UhpA was first phosphorylated using acetyl phosphate. Acetyl [32P]phosphate was enzymically synthesized in AcP buffer (25 mM HEPES; 60 mM potassium acetate; 10 mM MgCl2; pH 7·6) with 50 µCi [
-32P]ATP per unit of E. coli acetate kinase (Boehringer Mannheim), for 30 min at room temperature. Acetate kinase was removed from the acetyl-[32P]phosphate-containing mixture by filtration through a Centricon (10 kDa cut-off filter) microconcentrator (Amicon), including extensive filter rinsing in AcP buffer. His6-UhpA (515 µM) and acetyl [32P]phosphate were mixed, and incubated for 2·5 h at 30 °C. Similarly, non-radioactive P
UhpA was obtained by incubating 515 µM His6-UhpA with 10 mM acetyl phosphate and 10 mM MgCl2 in TEDG buffer (50 mM Tris/HCl pH 7·5; 1 mM DTT; 0·5 mM EDTA; 10%, v/v, glycerol), at 30 °C for 2·5 h. In both cases, P
UhpA (free of remaining acetyl phosphate, ATP and/or ADP) was collected by exchanging the buffer via a Bio-Gel P-6 microcolumn equilibrated in TEDG buffer. The actual phosphatase reaction was initiated by adding (G6P-containing) membrane vesicles to the P
UhpA product in 50 mM Tris/HCl pH 7·5, 5 mM MgCl2, 50 mM KCl, 0·5 mM EDTA, 1 mM DTT and 10% (v/v) glycerol.
The (de)phosphorylation reactions, carried out at room temperature, were quenched by adding 3x SDS-loading buffer (containing 30 mM EDTA), after which the samples were kept on ice. Before loading they were heated for 3 min at 55 °C and then separated by SDS-PAGE. Gels were first washed in 25 mM phosphate buffer (pH 7·5), then in demineralized water and subsequently dried under vacuum. Phosphorylated proteins were visualized and quantified by autoradiography (Kodak X-Omat AR film) and/or phosphorimaging (Bio-Rad). The experiments described were performed at least three independent times with a reproducible outcome; typical examples are shown in the results.
Immunodetection.
For Western blotting, total cellular protein, membrane-protein fractions, and purified His6-UhpB' or His6-UhpA (5100 ng) were separated by SDS-PAGE and then transferred to 0·4 µm nitrocellulose membranes using a semi-dry blotting system (Bio-Rad). Membranes were treated with a polyclonal rabbit antiserum (Institute made) against His6-UhpB' (diluted 1:5000) or His6-UhpA (diluted 1:10000). Antisera were raised in New Zealand White rabbits (Institute facility). Horseradish-peroxidase-conjugated goat anti-rabbit IgG (Bio-Rad) was used as secondary antibody, followed by treatment with SuperSignal chemiluminescent substrate (Pierce). The secondary antibody signal was detected and quantified by exposure of the membranes to film (Kodak X-Omat AR), followed by densitometric analysis.
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RESULTS |
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We then analysed the concentration range of G6P that stimulates UhpB autophosphorylation in this in vitro assay, to determine the apparent for transmembrane signalling via UhpBC. Experiments using all three above-mentioned methods to allow G6P access to the intra-vesicular compartment were performed at a range of physiological G6P concentrations (0300 µM). Inclusion of G6P via the freezethaw treatment gave the most reproducible results (as determined via Phosphor-Imager pixel quantification of P
UhpB bands) for the initial rate of P
UhpB formation. A typical example of such an experiment is shown in Fig. 2
, where a high ATP concentration (250 µM) was used to assure maximal initial rates. The half-maximal rate of P
UhpB formation, measured at 40 µM in the experiment shown, was observed at 25 (±10) µM G6P.
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Phosphorylation and dephosphorylation of UhpA by membrane-bound UhpB
To investigate phosphoryl transfer from UhpB to UhpA, membrane-bound UhpB was first incubated with [-32P]ATP to achieve maximum autophosphorylation of the kinase (Fig. 3a
, lane 1). Subsequently, purified His6-UhpA was added. In Fig. 3(a)
this is shown for a UhpB:UhpA molar ratio of 1:1 (lane 2). The phosphoryl transfer reaction was quenched after 30 s. Within this time interval 60% of the label detected in UhpB was released as inorganic phosphate and 25% reappeared as 32P
UhpA. The underlying time-course of UhpA phosphorylation was further analysed for different UhpB:UhpA molar ratios. P
UhpA formation appeared to be rapid and transient (Fig. 3b
), with an optimum ratio (i.e. maximum level of UhpA phosphorylation) of 1:5 (UhpB:UhpA). This relatively low optimal ratio may be due to a very high level of phosphatase activity of UhpB towards P
UhpA. By first phosphorylating UhpA, using acetyl [32P]phosphate, this could be further addressed. Due to the enzymic procedure used to synthesize acetyl [32P]phosphate, this reaction resulted in phosphorylated UhpA with a high specific activity, but a low chemical concentration (
0·5 µM) and an excess of non-phosphorylated UhpA. This may represent the in vivo situation; however, a higher initial P
UhpA concentration was nevertheless desirable. This was achieved by synthesizing non-radioactive P
UhpA separately and combining it with 32P
UhpA just prior to initiating the phosphatase assay. The experiment displayed in Fig. 4(a
, b
) shows that upon addition of UhpBC-enriched membranes, P
UhpA was rapidly dephosphorylated, as compared with the addition of membranes without UhpBC. This rapid dephosphorylation occurred independently of the presence or absence of intra-vesicular G6P (compare open and solid symbols) and the absolute concentration of P
UhpA (compare Fig. 4a
and 4b
).
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DISCUSSION |
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The Uhp system is also activated upon sensing a single extracytoplasmic ligand (G6P). However, the membrane-bound HPK, UhpB, is incapable of showing signal-stimulated autophosphorylation on its own (Island & Kadner, 1993 ). An additional membrane-bound protein, UhpC, is needed to sense G6P and to elicit autophosphorylation in the cytoplasmic domain of UhpB. The existence of this proposed UhpBC signalling complex has been thoroughly tested in vivo by Kadner and colleagues (Island & Kadner, 1993
; Wright et al., 2000
). Here we have investigated the phosphorylation characteristics of UhpBC in vitro, using an ISO membrane set-up. We observed that the range of concentrations at which G6P activates signalling (i.e. UhpB autophosphorylation) overlaps with the range of concentrations of G6P that in vivo determine the Uhp output (data not shown; Shattuck-Eidens & Kadner, 1981
). Co-operative effects downstream in the signal transduction pathway may explain the lower overall apparent
for the induction observed in vivo.
The three phosphoryl-transfer reactions that occur within the Uhp signal transduction pathway were addressed here in vitro in a stepwise fashion. The occurrence of all three activities, viz. autophosphorylation (1), phosphoryl transfer (2) and phosphatase activity (3), was demonstrated and characterized independently. This represents the first overall in vitro analysis of phosphoryl flow through the Uhp system and, indeed, the outcome confirms the hypothesized two-component paradigm. However, none of the three assays adequately imitates the in vivo situation, where all three regulatory Uhp proteins are simultaneously present. Under these conditions, sensing of G6P by UhpC induces autophosphorylation in UhpB and PUhpB instantaneously serves as a substrate for UhpA. The latter is present in a large molar excess over UhpB (data not shown).
Here we have demonstrated that the G6P concentration controls the rate of UhpA phosphorylation via the rate of UhpB phosphorylation. G6P does not directly affect the rate of phosphoryl transfer from PUhpB to UhpA, nor the phosphatase activity of UhpB towards P
UhpA. In our phosphoryl transfer assay the default phosphatase state (Wright et al., 2000
) of UhpB was only overcome for a few minutes after the addition of ATP, whereas, as demonstrated with the P
UhpA phosphatase assay, the presence of G6P in UhpBC-enriched vesicles could not switch off UhpB phosphatase activity towards P
UhpA. This single regulation phenomenon, i.e. the UhpB phosphatase activity remains constant while G6P turns on the UhpBC kinase activity, is in agreement with the general model proposed by Ninfa (1996)
. The dependence of UhpB kinase activity on the ATP concentration implies that in vivo, with cytoplasmic ATP concentrations in the order of 45 mM (Rohwer et al., 1996
), the UhpBC sensor will be kinase on with respect to UhpA phosphorylation, as long as extracellular G6P is being sensed.
For the EnvZ/OmpR system it has recently been shown that POmpR is stabilized when bound to its own target promoter DNA (Qin et al., 2001
). This followed a study that demonstrated enhancement of OmpR phosphorylation when it was bound to promoter DNA (Ames et al., 1999
). In the former study, P
OmpRDNA sequestration appeared to inhibit phosphatase activity by EnvZ [via squelching of (P
)OmpR]. The possibility of squelching/sequestration of UhpA and OmpR by the phosphoryl transfer domain of UhpB and EnvZ, respectively, has recently been described in detail (Wright & Kadner, 2001
; Wright et al., 2000
). However, the P
UhpA protecting role of uhpT promoter DNA in the presence of UhpB has not yet been addressed. Moreover, the in vivo relevance of these reported phenomena in wild-type cells remains to be clarified, taking into account that both systems have in common that their RRs exist in large molar excess relative to their cognate HPKs (
100:1), and that there are only a limited number of RR target promoters on the chromosome. Furthermore, this HPK:RR molar ratio, as well as the demonstration of HPKRR squelching inhibition, makes enhanced phosphorylation in a pre-existing HPKRR complex, as very recently reported for FixLFixJ (Tuckerman et al., 2001
), unlikely for the Uhp system, when taking into account that for the latter system the HPK and RR are present in equimolar concentrations (Tuckerman et al., 2001
).
Finally, our quantification of the in vivo concentration of UhpA (23 µM; unpublished data), in combination with the recently reported affinity of (P)UhpA for the promoter region of uhpT (Chen & Kadner, 2000
; Olekhnovich et al., 1999
), implies that the uhpT promoter region is already saturated with UhpA even in the absence of extracellular G6P. However, P
UhpA has a much higher affinity for the uhpT promoter region (Chen & Kadner, 2000
). Therefore, in G6P-induced cells phosphorylation of a relatively small fraction of the total amount of UhpA may well be sufficient to induce uhpT transcription.
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ACKNOWLEDGEMENTS |
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This work was supported by the Netherlands Organization for Scientific Research (NWO), through the division for Earth and Life Sciences (Gebied ALW).
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Received 13 July 2001;
revised 27 July 2001;
accepted 22 August 2001.