From the INSERM U467, 156 rue de Vaugirard, Paris F-75015 and Université Paris-Descartes, Faculté de Médecine, 15 rue Ecole de Médecine, Paris F-75005, France,
Proteomic Core Facilities of Institut Féderatif de Recherche 94, Faculté de Médecine, Université Paris-Descartes, 156 rue de Vaugirard Paris, F-75015 France, and || Department of Pathology, School of Veterinary Medicine Hannover, Bünteweg 17, 30559 Hannover, Germany
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ABSTRACT |
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Although the CFTR protein is an ATPase/ATP-binding cassette transporter that functions as a cyclic AMP and protein kinase A-activated anionic channel, it also exerts regulatory functions over various transport proteins, e.g. CFTR inhibits the apical sodium transporter ENaC (epithelial Na+ channel) and activates the outwardly rectifying chloride channel (ORCC) (1, 2).
In CF epithelia, CFTR deficiency is thought to result in defective anion secretion and excessive Na+ reuptake across epithelia, leading to insufficient intraluminal hydration, which causes mucus accumulation, and defective impaction states in intestine as well as impaired mucociliary clearance in airways. Nevertheless this model of pathogenesis, based on the principle of CFTR-controlled fluid homeostasis, is not a wholly satisfactory paradigm because it does not explain how the CFTR defect can give rise to the multiplicity of abnormalities that have been associated with the disease. These include changes in levels of protein secretion, in post-translational modifications of the secreted proteins, in intravesicular acidification, and in inflammatory and innate immune responses (1, 2).
The pleiotropic effects of the CFTR mutation indicate that the CFTR deficiency reverberates on various cellular process and therefore probably on the expression, functions, and interactions of the numerous proteins underlying these processes. CFTR interacts with various other proteins such as transport proteins, membrane receptors, proteins of routing and degradation machinery, and proteins of cytoskeleton through interaction with PDZ domain-containing proteins. These interacting proteins are supposed to form a complex protein network whose assembling modalities participate in the modulation of CFTR function (3, 4).
On the other hand, a growing body of evidence indicates that the CF phenotype depends on modifier factors (5, 6). It has been observed that genes such as mannose-binding lectin, glutathione S-transferase, transforming growth factor-ß1, tumor necrosis factor , ß2-adrenegic receptor, HLA class II antigens, and ClCA are linked to the pathogenesis of CF. Whether some of them are part of the CFTR protein network is presently unknown.
Most of the proteins directly involved in the CFTR complexes or indirectly dependent on CFTR function remain to be identified. In this perspective, it appeared likely that proteomics could help us to get a more complete and comprehensive picture of the effect of CFTR mutations by allowing the characterization of changes in protein expression, interactions, and functions that are induced by the CFTR defect.
This approach was successfully used in our laboratory (7) by applying conventional 2D electrophoresis on the total protein fraction of colonic crypts isolated from cftr/ mice. However, this approach is not optimal for the investigation of membrane proteins. For example, ion channels, which are the major players in the defective transepithelial ion transport in CF, are difficult to resolve by conventional 2D gel analysis due to their relatively low abundance compared with soluble proteins, their hydrophobicity, and their prevalent alkaline nature, which seriously compromise their resolution by electrofocusing (8, 9).
Several solutions have been developed to overcome the technical difficulties represented by the analysis of membrane proteins. For example, fractionation of cell lysates and biochemical enrichment has been reported to reduce pattern complexity on 2D gels and thus to improve visualization of low abundance proteins. Alternatively isoelectric focusing can be eliminated (one-dimensional electrophoresis), modified, or judiciously replaced with a different separation technique such as blue native (BN)-PAGE.
BN-PAGE, which appears today as a very promising solution for the investigation of membrane proteomes (10), was initially developed by Schägger and von Jagow (11) to separate intact and functional mitochondrial membrane protein complexes responsible for oxidative phosphorylation. This technique offers the unique advantage of separating native protein complexes present in membrane protein samples without dissociating them. It consists of polyacrylamide gel electrophoresis, where the non-denaturing compound Coomassie Blue G250 is added to the sample and to the electrophoresis buffers, to confer a negative charge on the protein complexes so they can migrate intact toward the anode.
Combining BN-PAGE with SDS-PAGE was shown to result in the separation of several individual subunits of the resolved complexes, offering an interesting two-dimensional electrophoresis approach that allows the profiling of membrane proteins and the characterization of their associations within the membranes. This alternative 2D method was successfully applied to screen for oxidative phosphorylation complex components in mitochondrial encephalomyopathies (12), Parkinson disease (13), and Alzheimer disease (14) as well as for the analysis of cytochrome c oxydase deficiency, indicating that this approach is applicable to clinical studies. Until now, the use of BN/SDS-PAGE for membrane proteome analysis in mammalian cells was only limited to purified mitochondria membrane fractions except for the analysis of raft domains (15), for endoplasmic reticulum (16), and for the very recent study of the microsomal membrane fraction from platelets (17). Here we used this technique for the study of the total membrane proteome of colonic crypt tissue from a knock-out CF mouse model (cftr /, cftrtm1Unc) that shows an intestinal phenotype very similar to that of the human intestinal disease (18). Indeed these mice present runting and failure to thrive, goblet cell hyperplasia, crypt dilatation, and intestinal obstruction (bearing similarity to meconium ileus, which is present in 1015% of CF patients (19)) with resulting perforation, peritonitis, and death.
In the present study, 2D BN/SDS-PAGE revealed impaired expression of complexes containing the mClCA3 protein in the colon of the cftr/ mice and proved to be an efficient tool for investigation of the membrane proteome from limited amounts of crude membrane preparation. On the basis of this finding, we investigated mClCA3 expression in normal (cftr+/+) and cftr/ mice by complementary expression analyses such as immunoblotting and immunohistochemistry. The data were supplemented by an ex vivo functional assay intended to investigate the mucin secretory response related to a known mClCA3 function.
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EXPERIMENTAL PROCEDURES |
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Mice used for this study were 34-week-old C57BL/6 males bred and genotyped in the Animal Core Facility at the Centre de Distribution, Typage and Archivage CNRS, Orléans, France. Mice lacking CFTR expression (cftr/) were of cftrtm1Unc genotype (20). All mice were allowed food and water ad libitum until the time of death.
Crypt Isolation and Sample Preparation
Animals were killed by cervical dislocation, and their distal colon was removed and immediately rinsed with cold HEPES-buffered solution (10 mM HEPES, pH 7.2, 140 mM NaCl, 47 mM KCl, 1 mM MgCl2). Crypts were isolated according to the method described by Kreiselmeier et al. (21). Briefly colons were opened longitudinally and immersed in Ca2+-free solution (0.2 mM NaH2PO4, 1.8 mM Na2HPO4, 107 mM NaCl, 45 mM KCl, 10 mM glucose, 10 mM EDTA, protease inhibitor mixture (Complete protease inhibitor mixture, Roche Applied Science), pH 7.2). The crypts were then separated from connective tissue and muscle layers by vigorous vortexing. Isolated crypts were collected by a brief centrifugation (1000 x g, 1 min) and strongly homogenized using a tight fitting glass homogenizer in a hypotonic lysis buffer (20 mM Tris, pH 7.4, 25 mM NaCl, 2.5 mM MgCl2, 1 mM EDTA, protease and phosphatase inhibitors (phosphatase inhibitor mixture II from Sigma)). The homogenate was then centrifuged at 3500 x g for 10 min to eliminate cell debris, nuclei, and the largest mitochondria. The supernatant was kept on ice while the pellet was resuspended, homogenized and centrifuged again. The combined supernatants were centrifuged at 120,000 x g for 1 h at 4 °C, and the final pellet, containing crude membranes, was kept frozen at 80 °C until use, generally within the next 24 h.
To solubilize membrane proteins and complexes, the membrane pellet was vigorously pipetted in 40 µl of extraction buffer containing 750 mM aminocaproic acid, 50 mM BisTris/HCl, pH 7.0, at 4 °C. Four microliters of 12.5% Triton X-100 were then added to the suspension. After incubation on ice for 20 min with vortexing every 5 min, insoluble membrane material was pelleted at 120,000 x g for 15 min. The protein concentration of the samples containing solubilized membrane proteins was determined using the Bio-Rad DC protein assay (Bio-Rad). To 40 µl of sample, 4 µl of 5% Coomassie Brilliant Blue G250 diluted in the extraction buffer were added. Samples were then briefly centrifuged at 10,000 x g to eliminate any precipitate and kept on ice until loading on BN gel.
Electrophoresis
BN-PAGE was performed according to a modification of the protocol by Schägger and von Jagow (11). All buffers were adjusted to pH 7.0 at 4 °C and filtered through 0.2-µm filters.
A 410% gradient gel with a 3.5% stacker was poured in the Bio-Rad Mini Protean III Cell using 1-mm spacers. RhinohideTM (Molecular Probes Europe, Leiden, Holland) was added to the acrylamide solution to ensure rigidity to the gel and thereby to limit distortions that could further affect reproducibility of the protein patterns.
The cathode buffer (15 mM BisTris/HCl, 50 mM Tricine) containing 0.02% (w/v) Coomassie Brilliant Blue G250 and the anode buffer (50 mM BisTris/HCl) were chilled to 4 °C before samples (150 or 250 µg of protein) were loaded. Forty micrograms of a ferritin solution diluted in the same buffer as samples was used as molecular weight standard.
Electrophoresis was begun at 10 mA at 4 °C. After 1.5 h, the cathode buffer was replaced by the same buffer containing 0.005% of the dye, and the electrophoresis was continued overnight at 8 mA with voltage set at 120 V. After the dye front had run off the gel, the lanes were cut out and washed with dissociating solution (1% (w/v) SDS, 1% ß-mercaptoethanol) for 10 min at room temperature. During the first electrophoresis, a second dimension 10% Tricine-SDS gel with a 4% upper gel was poured in Hoeffer plates (1.5-mm spacers). The excised lanes were then inserted between the glass plate assembly and sealed with hot agarose solution comprising 0.7% (w/v) agarose, 0.5% (w/v) SDS, and 15 mM ß-mercaptoethanol. Two gel strips were placed adjacently on a single Tricine gel to facilitate further comparison of protein profiles. They were separated by a 5-mm well reserved for the molecular weight standard. A dissociating solution (1% SDS, 150 mM ß-mercaptoethanol) was added on top of the sealed strips and allowed to diffuse into the gel for 10 min. Gel plates were then placed in the electrophoretic tank and overlaid with 500 µl of 2x Laemmli buffer with 5% ß-mercaptoethanol. Electrophoresis was performed at 20 mA for 1 h and then limited to 50 mA and 200 V for 6 h. Molecular weight standards (Bio-Rad) were loaded when the dye front reached the level of the bottom of the only well.
Silver Staining and Image Analysis
Proteins were visualized using the silver staining method performed according to Shevchenko et al. (22). Briefly gels were fixed in 50% methanol and 10% acetic acid followed by washing three times for 20 min in milli-Q water. Gels were then sensitized by incubating in 0.02% sodium thiosulfate followed by washing for 20 s in milli-Q water. Gels were immersed in 0.2% silver nitrate for 45 min and then rinsed twice for 20 s in milli-Q water. The development stage was carried out in 2% sodium carbonate and 0.05% formaldehyde (37%). Finally the reaction was terminated with 40g/liter Tris base and 2% acetic acid.
Analysis of the 2D gel image was carried out using ImageMaster 2D Elite software, version 4.01 (Amersham Biosciences). Three separate double gels with similar staining intensity were analyzed.
In-gel Digestions
Individual protein spots were manually excised and recovered in Eppendorf tubes containing 1% (w/v) acetic acid solution.
Argentic salts were removed from the spots by incubation in an equal mixture of A and B solutions from the Invitrogen silver staining kit, washed for 10 min with milli-Q water and 10 min with 12.5 mM ammonium bicarbonate in 50% acetonitrile, and then dehydrated in 100% acetonitrile.
For cysteine reduction and alkylation, dried gel pieces were incubated at 56 °C for 45 min in a solution containing 10 mM DTT and 25 mM ammonium bicarbonate. This solution was removed and replaced by 55 mM iodoacetamide in 25 mM ammonium bicarbonate. Following incubation for 45 min in the dark, gel pieces were washed with 25 mM ammonium bicarbonate to remove excess reagents and subsequently dehydrated with 100% acetonitrile. Dried gel pieces were rehydrated with a trypsin solution (trypsin (Promega, Charbonnières, France) in 25 mM ammonium bicarbonate) for 30 min on ice. The remaining trypsin solution was discarded to limit trypsin autolysis. Gel pieces were then overlaid with 25 mM ammonium bicarbonate and incubated overnight at 37 °C. After digestion, the supernatant containing the tryptic peptides was recovered. The remaining peptides were sequentially extracted from the pieces of gel by two successive 10-min sonications in 12.5 mM ammonium bicarbonate, 50% acetonitrile, 0.1% TFA, and pure acetonitrile. The supernatants were pooled, dried in a SpeedVac concentrator, and then reconstituted in 5 µl of TB buffer (50% acetonitrile, 0.1%TFA).
Mass Spectrometry Analysis and Database Searching
Peptides were analyzed by MALDI-TOF MS using an Autoflex instrument (Bruker Daltonics). Samples (0.5 µl) were spotted onto a steel target plate (Bruker Daltonics) together with a 1:3 dilution of a saturated -cyano-4-hydroxycinnamic acid solution in TB buffer. The spots were allowed to air dry for homogenous crystallization.
The instrument was operated in positive ion reflector mode. Each spectrum was the cumulative average of 250450 laser shots. Mass spectra were first calibrated in the closed external mode using the peptide mixture standard Peptide Mixture-1 from Bruker Daltonics, sometimes using the internal statistical mode to achieve maximum calibration mass accuracy, and analyzed with FlexAnalysis software, version 2.0 (Bruker Daltonics). Peptide mass peaks from each spectrum were submitted to the Mascot peptide mass fingerprint search form (www.matrixscience.com) for analysis with BioTools software, version 2.1 (Bruker Daltonics).
The search included peaks with a signal-to-noise ratio greater than 4. The peak list for each sample was sent into and used to query the non-redundant Mass Spectrometry Protein Sequence Database (MSDB) for protein identification. Standard settings included the following: enzyme, trypsin; missed cleavages, one; fixed modifications, none selected; variable modifications, oxidized methionine and carbamidomethylated cysteine; protein mass, blank; mass values, MH+ (monoisotopic); mass tolerance, varied between 75 and 100 ppm depending on the sample.
Immunoblot Analysis
Crypts of distal colon from control and cftr/ mice were lysed using the method described above except that 3500 and 120,000 x g pellets containing insoluble cell material were pooled.
For lung extracts, animals were killed by cervical dislocation, and lungs were removed and immediately rinsed with cold HEPES-buffered solution (10 mM HEPES, pH 7.2, 140 mM NaCl, 47 mM KCl, 1 mM MgCl2). Lungs were strongly homogenized using a tight fitting glass homogenizer in a hypotonic lysis buffer (20 mM Tris, pH7.4, 25 mM NaCl, 2.5 mM MgCl2, 1 mM EDTA, protease and phosphatase inhibitors). Unlysed cells and nuclei were removed from the cell homogenate by centrifugation (900 x g for 10 min at 4 °C). The homogenate was then centrifuged first at 3500 x g for 20 min to eliminate the largest mitochondria and then at 120,000 x g to pellet the remaining membranes.
Membrane proteins were extracted from crude membrane preparations using an SDS detergent lysis buffer (2% SDS, 10 mM Tris, pH 6.8, protease inhibitor mixture). After vigorous vortexing at room temperature and three 1-min sonications, the lysates were clarified at 20,000 x g at 15 °C for 20 min. Protein concentration was determined using the Bio-Rad DC protein assay.
Total membrane protein extracts from crypts of the distal colon were separated by 10% SDS-PAGE and transferred to a nitrocellulose membrane (Bio-Rad) according to the standard protocol. Membranes were probed with an anti-mClCA3 antibody, -p3a (1:1000) or
-p3b (1:2000) (23).
Densitometric analysis of immunoblots was carried out using the ImageMaster 2D Elite software, version 4.01 (Amersham Biosciences). Band intensity from the CF samples was normalized to the value obtained for the wild type sample of each experiment (which was given an arbitrary value of 100). The calculated values are semiquantitative and are only meant to give some relative information on band intensities.
Immunohistochemistry
Mouse intestinal distal colon was rapidly rinsed in PBS, recovered with Bright Cryo-M-Bed (myNeurolab, St. Louis, MO), and immediately frozen in liquid nitrogen. Lungs were first flushed with PBS containing 50% Bright Cryo-M-Bed, recovered with 100% Bright Cryo-M-Bed, and frozen in liquid nitrogen. Six-micrometer cryosections of mouse tissues were fixed with cold acetone for 10 min at 4 °C. The immunohistochemical procedures were performed as described elsewhere (24). Briefly all steps were carried out in a humid chamber. Mouse sections were rehydrated in PBS, pH 7.4, and permeabilized with 0.25% Triton X-100 in PBS. Nonspecific binding sites were blocked with 10% FCS and 3% BSA for 1 h at room temperature. Sections were incubated with the primary anti-mClCA3 antibody 3b in 10% FCS and 1% BSA overnight at 4 °C (working dilution for the rabbit anti-mClCA3 antibody 3b was 1:8000). mClCA3 was visualized with Alexa 488-conjugated goat anti-rabbit IgG (heavy + light) secondary antibody (Molecular Probes) diluted 1:1000. The nuclei were visualized with propidium iodide contained in the Vectashield mounting medium (Vector Laboratories, Burlingame, CA). Tissue sections were examined under a Leica confocal laser screening microscope with argon ion lasers appropriate for Alexa 488 and propidium iodide. Images were collected with Leica 10x or 40x oil objectives.
Mucus Secretion Assay
Distal colons were harvested from 3-week-old male mice. For each experiment, the colon was cut into two equal parts that were opened longitudinally and preincubated for 10 min in an oxygenated Ringers solution maintained at 37 °C and containing 100 µM niflumic acid or DMSO (1:1000 dilution). The composition of the Ringers solution was 145 mM NaCl, 1 mM MgCl2, 3 mM KCl, 2 mM CaCl2, 1 mM HEPES, pH 7.4. Samples were pinned mucosal side up on a wet 8.0-µm Millipore filter and mounted between the two cells of home-made microchambers maintained at 37 °C. The apparatus, based on the chamber technology used in electrophysiological studies (Ussing chambers), allowed the perfusion of different solutions at the basal side. A constant powerful oxygen bubble flush on the mucosal surface was maintained during the whole experiment to oxygenate the tissue and to strongly homogenize the mucosal chamber content. The upper, mucosal, chamber was filled with 95 µl of Ringers solution. Aliquots (10 µl) were periodically replaced by the same volume of Ringers solution for glycoprotein measurements. Samples were mixed with 2x Laemmli sample buffer and loaded on 11% SDS-polyacrylamide gels. Proteins were allowed to pass through the 3.75% stacking gel, and their migration was stopped when the dye front penetrated 5 mm into the 11% resolving gel. This allowed concentration of all the proteins into a sharp band.
Gels were fixed in 5% acetic acid and 50% methanol, and glycoproteins were first oxidized by a periodic acid treatment and then stained using the 300 nm excitable fluorescent hydrazide Pro-Q Emerald dye (Molecular Probes). The Pro-Q Emerald glycoprotein stain reacts with periodate-oxidized carbohydrate groups, generating a bright fluorescent signal localized to glycoproteins when gels are placed on a UV transilluminator. Detection sensitivity and linear dynamic range of the dye have been meticulously evaluated by Steinberg et al. (25) for various model glycoproteins visualized on polyacrylamide gels. Most of the glycoproteins tested by Steinberg et al. (25) were readily quantified over a 5001000-fold linear range except for two of them that showed a linear range of 125-fold. We used the stain as indicated by the supplier using a UV transilluminator (Bio-Rad) for visualization of glycoproteins. In our experimental conditions, the limit of detection was 100 ng for the 1-acid glycoprotein (Candy Cane standard glycoproteins from Molecular Probes) as well as for type 1S mucins purified from bovine submaxillary glands (Sigma). We verified that the dynamic range was linear within the 1001250-ng range for the tested glycoproteins. The quantity of glycoproteins detected in samples was estimated to be 1501000 ng relative to the
1-acid glycoprotein standard. After image acquisition, the intensity of visualized bands was semiquantified using the ImageMaster 2D Elite software, version 4.01 (Amersham Biosciences).
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RESULTS |
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Crypts (Fig. 1A) were isolated from the distal colon of cftr+/+ and cftr/ mice to eliminate nonrelevant tissues such as muscular and connective tissue that could compromise the quality and significance of further 2D analysis. Crude membranes were prepared from this material by a classical cell fractionation centrifugation method to selectively enrich protein from membranes and organelles other than nucleus (e.g. mitochondria, ER, and Golgi apparatus) and thereby reduce spot pattern complexity.
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One of the largest and most intensely stained spots that appeared on the 2D gels, spot w, has an apparent electrophoretic mobility of 75 kDa in the SDS-PAGE dimension. This spot was unambiguously identified as the mClCA3 protein (Fig. 2), a calcium-activated chloride channel that has been shown to be associated with the mucin granule membrane of gastrointestinal, respiratory, and uterine goblet cells and other mucin-producing cells (23). The corresponding complex migrates at more than 900 kDa in the BN gel. It appears to contain few spots with a weaker intensity compared with that of mClCA3, suggesting that the 75-kDa mClCA3 protein is the main component of this large complex. Two other spots (i and j, Table I) were also differentially expressed between cftr+/+ and cftr/ mice, but they were not further analyzed in the present study. The differences in other spots (Fig. 1B, marked with *) were not reproducible.
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Comparison of Protein Maps Obtained from cftr+/+ and cftr/ Mice
Comparison of the membrane protein profiles from cftr+/+ and cftr/ colonic crypts revealed that the mClCA3-containing complex was relatively under-represented in the cftr/ colon as confirmed by a densitometric analysis of the mClCA3 bands (Fig. 1C). Moreover no or poor signal corresponding to the comet products of the SDS-PAGE mentioned above was detected above the 75-kDa mClCA3 spot, suggesting that higher mClCA3-related forms are also under-represented in the sample from cftr/ mice.
Differential Expression of mClCA3 Protein in Colon and Lung of cftr/ Mice
The comparison of the mClCA3 expression pattern detected on BN/SDS-PAGE gels suggested that overall expression of the mClCA3 protein may be impaired in the colonic crypts of cftr/ mice. To test this hypothesis, we performed an immunoblotting analysis of the membrane fraction isolated from wild type and CF crypts using specific mClCA3 antibodies. As shown in Fig. 3, mClCA3 antibodies detected a major protein of 75 kDa and one minor band of 110 kDa in crypt extracts from wild type animals (seen only in the middle and right panels of Fig. 3). In comparison, levels of mClCA3 bands in the corresponding cftr/ tissue were significantly lower (normalized to galectin-4, a well known membrane-associated protein highly expressed in the colon).
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To further investigate whether the differential expression of mClCA3 observed between cftr+/+ and cftr / could be associated with altered cellular distribution, we analyzed the localization of mClCA3 protein by immunohistochemistry and confocal laser scanning microscopy (Fig. 4). In the distal colon, consistent with a previous study (23), the mClCA3 staining was mainly detected in the upper two-thirds of mucosal crypts of the distal colon (Fig. 4A, a, b, and f). All the labeled cells exhibited a granular, often intense, staining pattern throughout the cytosol at the luminal side. In addition, a faint staining of the mucous layer lining the intestinal surface and the luminal surface of the crypts was also detected. In contrast, mClCA3 staining was below the detection threshold in the distal colon of cftr/ mice (Fig. 4A, c and g).
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Comparison of Carbachol-induced and Niflumic Acid-sensitive Glycoprotein Secretion in the Distal Colon of cftr+/+ and cftr/ Mice
A growing body of evidence suggests that mClCA3 and its human counterpart hClCA1, which are two members of a family of calcium-activated chloride channels (CaCCs), play a crucial role in mucus production by goblet cells (26, 27). The most common blocker for native CaCCs is niflumic acid (NA), a non-steroidal anti-inflammatory drug classically used to identify anion currents as CaCCs in different tissues. NA is regarded as a potent and reversible blocker of calcium-activated chloride conductances (2831). Furthermore recent data suggest that it also reduces mucus secretion by acting on mClCA3 and hClCA1 proteins (32, 33). Therefore, the ability of NA to inhibit both chloride and mucus secretion driven by mClCA3 makes it a good candidate for probing the involvement of these proteins in secretion processes within mouse epithelia.
To determine whether CaCC-related mucus secretion, i.e. possibly mediated by mClCA3, is affected in the cftr/ colon, the response of distal colon to the mucin secretagogue carbachol in the presence or absence of NA was investigated in an ex vivo assay (Fig. 5). In these experiments, pieces of distal colon were mounted in perfusion chambers, and mucin secretion was measured as accumulation of glycoproteins on the mucosal side as detected by Pro-Q Emerald reagent (see "Experimental Procedures" for details). Several lines of evidence confirm that the cholinergic agonist carbachol induces Ca2+-dependent chloride secretion as well as the degranulation of goblet cells in various epithelia (5, 34, 35) and in particular in colonic crypts (36). Consistent with these data, the results presented in Fig. 5 show that carbachol (20 µM) efficiently stimulated glycoprotein release by the wild type distal colon epithelium. This response to the secretagogue was a rapid phenomenon, reaching its maximum after 46 min of stimulation under our experimental conditions. Application of NA (100 µM), but not of an inhibitor of CFTR (CFTR-inh172, 10 µM (37)), markedly diminished the carbachol-stimulated glycoprotein release suggesting that CaCC, but not CFTR, participates in this secretion process. Distal colon explants from cftr/ mice did not respond to carbachol, their glycoprotein release in the presence of the secretagogue being close to the secretion levels observed in unstimulated colons from cftr+/+ mice. Taken together, these results showed that a carbachol-induced NA-inhibited glycoprotein secretion is impaired in the distal colon of cftr/ mice and supported the conclusion that ClCA function may be defective in this tissue.
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DISCUSSION |
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Altogether we show that BN/SDS-PAGE allows effective separation of protein species and complexes from various subcellular origins, including mitochondria, plasma membrane, and intracellular vesicles, present in a typical crude membrane preparation obtained by differential centrifugation prefractionation. The limited heterogeneity of such an extract did not represent a limiting factor for the correct mapping of membrane proteins using this alternative 2D technique.
Biochemical Characteristics of Proteins Resolved by BN-PAGE
Although in-gel tryptic cleavage is disadvantaged in the analysis of hydrophobic regions of proteins, compromising transmembrane protein identification by subsequent MALDI-TOF MS, the results presented in Table I show that 68.2% of the proteins that were successfully identified by MALDI-TOF MS had one to nine putative transmembrane domains, and 31.8% had a pI value higher than 9, probably rendering their separation by the usual 2D gel separation method difficult or impossible. Thus, it can be asserted that the 2D BN/SDS-PAGE technique seems particularly well suited for separation of transmembrane proteins and proteins with high pI values that usually fail to enter the first dimension of 2D IEF/SDS gels, allowing us to conclude that BN/SDS-PAGE constitutes an interesting complement to conventional 2D electrophoresis. Accordingly mClCA3, one of the most abundant proteins on BN/SDS-PAGE, was not detected on the 2D IEF/SDS analysis performed with the membrane protein preparation that we describe in this study (data not shown).
mClCA3 Migration Profile in BN/SDS-PAGE
The mClCA3 protein has an apparent electrophoretic mobility of 75 kDa in the second dimension of BN/SDS-PAGE (Fig. 1) as well as in single SDS-PAGE as shown on immunoblots (Fig. 3). This differs from the molecular weight reported by Leverkoehne and Gruber (23) who found an apparent molecular mass of 90 kDa in immunoblot from total cellular extracts obtained from the whole mouse colon. This difference may be due to the experimental conditions used for electrophoresis. Such an explanation seems unlikely because we have found that mClCA3 migrates as a 75-kDa protein in two different conditions, i.e. 8% Tricine-SDS-PAGE and 10% glycine-SDS-PAGE. Alternatively the difference could be explained by the type of cellular extract. This explanation is plausible because, in our study, the 75-kDa mClCA3 protein was present in membrane samples from crypts of the distal colon and in the same preparation from lung, whereas a total protein extract was used by Leverkoehne and Gruber (23).
The protein sequence deduced from the mClCA3 cDNA corresponds to a 913-amino acid polypeptide with a predicted molecular mass of 100.07 kDa. Accordingly in vitro translation of mClCA3 results in a 100-kDa product that increases in size to 110 kDa after glycosylation by microsomal membranes (23). However, like other members of the ClCA family (such as its human, porcine, and equine counterparts: hClCA1, pClCA1, and eClCA1), mClCA3 post-translational modifications produce shorter final products in native tissues or when expressed in heterologous systems. In this regard, it was shown that several members of the ClCA family have potential proteolytic cleavage sites and might be proteolytically processed to shorter size mature forms (43).
The mClCA3 peptide mass fingerprint obtained after tryptic digestion of mClCA3 samples indicates the lack of C-terminal peptides from the amino acid at position 686. None of the eleven peptides in the 10003000-Da range expected from the theoretical tryptic digest (with one miscleavage allowed) were present on MS spectra. This suggests that a proteolytic removal of this C-terminal region of mClCA3 occurs in the tissue. The calculated molecular weight of the 1685 region is 75.3 kDa (or 73.3 kDa when, in addition, the N-terminal peptide signal sequence (121) is cleaved), which is very close to the molecular weight of the mClCA3 detected by BN SDS-PAGE and immunoblot analysis. However, we cannot exclude that the tryptic peptides in this region are not properly recovered from the gel and/or ionized.
The mClCA3-containing complex migrates at 1000 kDa in the BN gel. This large mClCA3-containing complex migrated systematically, in eight independent experiments, at the same position in the first dimension, and the mClCA3 protein band appeared as a well delimited vertical comet in the second, a pattern that does not correspond to random aggregation of mClCA3 proteins. Nevertheless we cannot exclude the possibility that mClCA3 proteins aggregate during BN analysis to form the high molecular weight complex even though the charged blue dye, Coomassie Brilliant Blue G-250, added in sample and cathode buffers (0.5% and 0.02%, respectively) binds to the hydrophobic protein surface and reduces aggregation. Alternatively mClCA3 could be clustered in microdomains in the vesicle membrane.
Two minor forms of the mClCA3 protein, the 48- and 110-kDa forms described by Leverkoehne and Gruber (23), were also detected by us as minor components of the mClCA3-containing complex. Finally other protein spots not annotated on Fig. 1 were also detected in the vertical line of the mClCA3 protein in samples from cftr+/+ mice. Identification of these putative partners of mClCA3 is in progress.
A Link between mClCA3 and CFTR Expressions
We show that mClCA3 expression is significantly reduced in two murine epithelia lacking CFTR, i.e. in the lung and colon of cftr/ mice. The search for the underlying mechanisms that link the expression of mClCA3 and CFTR function was not within the scope of the present study. Nevertheless the data from two groups point to a possible relation between CFTR (a cAMP-dependent Cl channel) function and the expression of Ca2+-dependent Cl channels. It has been postulated that an as-yet-unidentified Ca2+-sensitive Cl conductance in the cftr/ mouse rescues the cystic fibrosis mouse from significant airway disease (4446). There was no molecular entity that could have accounted for this effect until mClCA1, the first identified murine member of the ClCA gene family, was described (47). Henceforth in consideration of recent studies on its tissue distribution (23), it can be reasonably proposed that mClCA3 represents this Ca2+-dependent Cl conductance.
However, the role of Ca2+-dependent Cl channels is more complex. For example, it is known that the lethal intestinal pathology of CF is associated with the absence of a Ca2+-activated pathway for Cl secretion, whereas expression of a Ca2+-sensitive Cl conductance in the murine intestine is thought to compensate for the lack of CFTR function and to rescue the intestinal phenotype (46, 48). Once again, mClCA3 may constitute this Ca2+-dependent Cl conductance. Consistently Ritzka et al. (6) have shown that the ClCA locus is associated with a CFTR-independent, 4,4'-diisothiocyanostilbene-2,2'-disulfonic acid-sensitive, residual chloride conductance in the rectal mucosa of CF patients. The authors concluded from genetic and expression studies that hClCA4 and more likely hClCA1, the human counterpart of mClCA3, could be a modulator of the basic gastrointestinal defect in cystic fibrosis. Hence the reduced expression of mClCA3 protein that we describe in the present study can be thought of as a determinant of the cftrtm1Unc mice intestinal pathology.
Impaired Carbachol-induced and Niflumic Acid-sensitive Mucus Secretion in CF Colon
It has been proposed that a Ca2+-dependent Cl channel is implicated in the secretion of mucous glycoproteins (termed mucins) (26, 32, 33). In the present study, we show that a Ca2+-stimulated mucin secretion, strongly inhibited by NA, is defective in the distal colon of cftr/ mice.
In the colon, mucin secretion contributes to the barrier function of the epithelium (49). The bulk of mucins originates from the goblet cells located in the epithelium lining the crypts. Regulation of mucus secretion by these cells is not well understood. It involves granule fusion and exocytotic release of granule content at the luminal surface. Most agonists that stimulate mucus secretory response are also potent ion secretagogues, suggesting that both phenomena are linked. Our results suggesting that a ClCA-related mucin secretion is defective in cftr/ mice are in agreement with previous observations showing that animals lacking functional CFTR exhibit no Cl secretory response to agonists that increase intracellular Ca2+ (46, 5052). We propose that ClCA and most likely mClCA3, which is localized in goblet cells, are involved in this mucus secretory response. In turn, the underexpression of mClCA3 protein in cftr/ mice participates in the defect of fluid and mucus transport in the colon.
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ACKNOWLEDGMENTS |
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FOOTNOTES |
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1 The abbreviations used are: CF, cystic fibrosis; CFTR, cystic fibrosis transmembrane regulator; cftr/ and cftrtm1UNC, cftr knock-out mice; BN, blue native; 2D, two-dimensional; CaCC, calcium-activated chloride channel; NA, niflumic acid; BisTris, 2-[bis(2-hydroxyethyl)amino]-2-(hydroxymethyl)propane-1,3-diol; Tricine, N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine; ER, endoplasmic reticulum; CCT, chaperonin containing tailless complex polypeptide 1 (TCP-1).
* This work was supported by grants from the European Community (Grant QLG2-CT-2001-01335), INSERM, and the French Cystic Fibrosis associations Vaincre la Mucoviscidose and ABCF. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
¶ Both authors contributed equally to this work.
** Present address: Institut für Veterinär-Pathologie, Fachbereich Veterinärmedizin; Freie Universität Berlin, Robert-von-Ostertag-Strasse 15, D-14163 Berlin, Germany.
Published, MCP Papers in Press, August 11, 2005, DOI 10.1074/mcp.M500098-MCP200
To whom correspondence should be addressed: INSERM U467, 156 rue de Vaugirard, Paris F-75015, France. Tel.: 33-1-40-61-56-21; Fax: 33-1-40-61-55-91; E-mail: edelman{at}necker.fr
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