1 Department Basic Medical Sciences, St Georges Hospital Medical School, London, SW17 0RE, UK
2 Genetics and Molecular Biology Research Group, Institute of Biology and Environmental Sciences, University College of Nyiregyhaza, Sostoi ut 31/B, Nyiregyhaza 4400, Hungary
* Author for correspondence (e-mail: s.cotterill{at}sghms.ac.uk)
Accepted 4 March 2005
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Summary |
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First we show that its location is consistent with a cellular role post replication initiation as it remains nuclear throughout G1, S and G2 phases. In addition, we have been able to reduce the level of DmCdc6 protein to nondetectable levels in S2 cells using RNAi. This causes DNA fragmentation and cell cycle abnormalities which have some similarities with phenotypes previously observed in yeasts and are consistent with the cells entering mitosis with incompletely replicated DNA. Finally, we have stably overexpressed the DmCdc6 protein to a high level in S2 cells. Despite a large excess of protein the effects on the S2 cells were minimal. We did, however, detect a slight stalling of the cells in the late S phase of the cell cycle, which further supports the proposal that DmCdc6 has a role in controlling the transition from the S to M phases of the cycle.
Key words: Cdc6/18, Drosophila, DNA replication, Cell cycle
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Introduction |
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Of the two, its role in DNA replication has been more extensively studied (reviewed by Bell and Dutta, 2002). In this case Cdc6 is one of the earliest proteins required and is involved in the formation of the prereplicative complex. Together with cdt1, Cdc6 binds after the hetero-hexameric origin recognition complex (ORC), but its binding precedes and is needed for the loading of the six-membered minichromosome maintenance protein (MCM) complex. In the absence of Cdc6 no prereplicative complex can be formed. The prereplicative complex then provides the platform from which bulk DNA synthesis is launched. Although this sequence of events has been well studied, the exact biochemical activities catalysed by these proteins remains to be clarified, with the exception of the MCM complex which is thought to be the replicative helicase (reviewed by Bell and Dutta, 2002
).
The checkpoint role of Cdc6/18 is less well understood. In Saccharomyces cerevisiae Cdc6 has been suggested to play a direct role in mitotic exit by inactivating cdc28 kinase complexes (Bueno and Russell, 1992). In Schizosaccharomyces pombe it is thought to be needed for the replication arrest checkpoint acting through cds1 (chk2) (Murakami et al., 2002
). A replication checkpoint-related role has also been reported in Xenopus, although in this case it acts through chk1 (Oehlmann et al., 2004
). In Xenopus Chk1 also seems to be involved in the observed role of Cdc6 to couple the S and M phases of the cell cycle (Clay-Farrace et al., 2003
).
Species-specific differences have been reported in the behaviour of the Cdc6/18 during the cell cycle (reviewed by Kearsey and Cotterill, 2003). Cdc6/cdc18 in S. cerevisiae/S. pombe is an unstable protein that is present only in a narrow window of the cell cycle (Baum et al., 1998
; Piatti et al., 1995
), whereas in higher eukaryotes the protein seems to be more stable but has been reported to show cell cycle changes in localisation (Saha et al., 1998
; Petersen et al., 1999
). Several reports have suggested that the protein is nuclear and probably chromatin bound in G1, and then moves to the cytoplasm in S. Although it is worth noting that many of the observations providing localisation data were carried out using overexpressed protein, a recent paper has suggested that endogenous Cdc6 in mammalian cells may remain nuclear and chromatin associated throughout the whole cycle (Alexandrow and Hamlin, 2004
).
Differences in Cdc6 behaviour between species might be responsible for the species-specific variations that are observed when Cdc6/18 is overexpressed. Overexpression of cdc18 in S. pombe causes overreplication of the DNA, particularly in combination with cdt1 (Yanow et al., 2001). In S. cerevisiae a delay in the initiation of M phase is seen, although the overall growth rate is not affected (Elsasser et al., 1996
). In higher eukaryotes the effect of increased expression of Cdc6 is dependent on the phase of the cell cycle in which it is carried out. In nonsynchronised cells retrovirally overexpressed protein shows no measurable effects (Petersen et al., 2000
). However, if high levels of protein are microinjected into cells in the G2 phase of the cell cycle the cells are prevented from entering mitosis (Clay-Farrace et al., 2003
). Finally, adenoviral directed expression in quiescent mammalian cells (from which it is normally absent) causes MCM loading and, if coupled with serum stimulation of the cells, advancement of S phase entry (Cook et al., 2002
).
The effect of knocking out or mutating the gene also varies depending on the species under study. In S. pombe cdc18 null mutants go through mitosis without having first replicated their DNA, producing a cut phenotype that is lethal (Kelly et al., 1993). Reduction division and lethality is also observed for null mutants in S. cerevisiae (Piatti et al., 1995
). In higher eukaryotes in vivo knockout experiments for Cdc6 have not been reported; however, depletion of the protein in Xenopus extracts causes a block before S phase (Coleman et al., 1996
). Dominant negative mutants for mammalian cells (Walker A and B box mutants) cause a stop during the S phase of the cell cycle (Herbig et al., 1999
), a result that is consistent with what is observed for analogous mutants in S. cerevisiae.
In the studies reported in this paper we have looked at DmCdc6 in the three areas where behavioural differences have been reported in other species. In terms of cell cycle localisation we found that both endogenous and overexpressed DmCdc6 remain nuclear during S phase. We have also looked at the effect of knocking out DmCdc6 in vivo by exploiting the amenability of Drosophila S2 cells to RNAi. We show that reduction of DmCdc6 protein to nondetectable levels causes DNA fragmentation and cell cycle abnormalities that have some similarities with phenotypes previously observed in yeasts. Knockout experiments have not previously been reported for other higher eukaryotic systems. Finally, we have shown that, consistent with observations in most systems, with the exception of S. pombe, even high-level stable overexpression of DmCdc6 in nonsynchronised S2 cells has only minimal effects on cell functioning.
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Materials and Methods |
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Antibody production
The C-terminus (AA 343 to AA 662) of DmCdc6 was amplified by PCR and cloned in frame with the 6xHis tag of pRSETa.
The plasmid was transformed into BL21 cells and the production of protein was induced by IPTG for 3 hours at 37°C. The 6Xhis-tagged protein was purified using Talon resin (BD Bioscences) following the manufacturer's instructions for the purification of proteins under denaturing conditions in urea. The purified protein was used to immunise two rabbits (Neosystem, Strasbourg).
Cell fractionation
Cell fractionation was carried out as described previously (Crevel et al., 2001; Mathe et al., 2000
). Briefly, cells were spun down and lysed by homogenisation in PBS. The nuclear pellet was separated from the cytoplasmic fraction by centrifugation at 5000 g in an eppendorf bench centrifuge. The pellet was then resuspended in PBS containing 0.5% Triton, and centrifuged at 5000 g. The supernatant after centrifugation was the nucleoplasmic fraction, and the remaining pellet was resuspended in SDS loading buffer and constituted the chromatin fraction. Samples were analysed by PAGE and western blotting.
RNAi
Two nonoverlapping regions of DmCdc6 were chosen as the targets for the RNA interference experiment (nucleotides 457-1026 and 1048-1589 of the mRNA; Fig. 3A).
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The double-stranded RNA was obtained using the MEGAscript T7 kit (Ambion) as described by the manufacturers, with the following modifications: the reaction was carried out in 40 µl overnight at 37°C. To denature secondary structures the RNA was heated at 65°C for 30 minutes and left to slowly cool down to room temperature. The double-stranded RNA was precipitated with isopropanol, washed with ethanol 70% and resuspended in 50 µl H2O. Typically this yielded 8-9 µg/µl of RNA.
The RNAi experiment was carried out on S2 cells in exponential growth phase exactly as described by Maiato et al. (Maiato et al., 2003). Fifteen micrograms of RNA were added per well (106 cells) and the cells were monitored by cell count, FACS analysis, western blotting, RT PCR and immunofluorescence over a period of 7 days. Control RNAi experiments used a similar size piece of RNA directed against a nonrelated human protein. In each case the experiment was carried out multiple times and the results presented represent the combined data of several independent experiments.
Drug treatment of S2 cells
Aphidicolin treatment: Cells were grown to a density of 5 x106 and then split into two parts. One part remained untreated and to the other part was added aphidicolin to a final concentration of 4 µg/ml. The incubation was then continued for 2 days, with a sample of the cells being taken on each day. Analysis was by FACS analysis and western blotting.
Ecdysone treatment: Cells were grown to a density of 5 x106 and then split into two parts. One part remained untreated and the other part was treated with ecdyosone exactly as described by MacAlpine et al. (MacAlpine et al., 2004).
RTPCR
CDNA was made using the cell to cDNA kit from Ambion as described in the manufacturer's instructions. 500,000 cells were lysed and 50,000 of these were then used to make cDNA. The equivalent of 5000 cells was then amplified using appropriate primers as described in the text and Fig. 3A using Megamix blue (Microzone).
FACS analysis
Cells at appropriate stages were harvested and fixed using ethanol. Immediately before use they were treated with 10 µg/ml RNase (in the presence of EDTA) and the DNA was stained with propidium iodide. The flow cytometry analysis was carried out on a Epics XL (Coulter Beckman) supplied with Expo32 ADC software.
Immunofluorescence
At each time point an aliquot of the cells was deposited on polylysine treated coverslips. The cells were fixed using 4% paraformaldehyde diluted in a buffer containing: 1.1 mM Na2HPO4, 0.4 mM KH2PO4, 137 mM NaCl, 5 mM KCl, 2 mM MgCl2, 2 mM EGTA, 5 mM Pipes, 5.5 mM glucose, pH 6.1 (Maiato et al., 2003). After permeabilisation in PBS, 1% BSA and 0.1% triton X100, the coverslips were processed for immunofluorescence using primary antibodies for: mouse anti-alpha tubulin (Sigma, clone DM 1A), mouse anti-lamin (gift from D. Glover lab) and rabbit anti-phospho H3 (Upstate). The secondary antibodies were from Molecular Probes: Alexa fluor488 anti-mouse and Alexa fluor 594 anti-rabbit. The DNA was counterstained with TOTO3 iodide (Molecular Probes). The coverslips were mounted in mounting medium Vectashield (Vector), and analysed by confocal microscopy (Biorad).
Overexpression of DmCdc6 in S2 cells
Full-length DmCdc6 was cloned into the Not1 and Xho1 sites of the pMT/V5 hisA vector (Invitrogen) in such a way that it was His- and SV5-tagged at the C terminus and under the control of the inducible metallothionein promoter. The construct was introduced into S2 cells along with the pCoBlast vector using the calcium phosphate procedure, and cells stably transfected with the cdc6 gene were selected using blasticidin according to the manufacturer's instructions.
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Results |
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These cell fractionation studies suggested that the protein was largely nuclear. In cells growing in mid-exponential phase most of the protein appeared to be quite tightly bound into the nucleus (Fig. 2B). When an analysis of the cell cycle stage of the cells used for the fractionation by FACS analysis was carried out the cell populations were shown to consist of roughly equal populations of cells in the G1 and G2 phases of the cell cycle (Fig. 2C). This would suggest that the DmCdc6 does not become cytoplasmic at either of these stages of the cell cycle.
In other systems it has been suggested that Cdc6 moves out of the nucleus during the S phase. To test whether this was the case in Drosophila cells the cell fractionation was performed with cells that had been stalled in the S phase of the cell cycle using aphidicolin (Fig. 2D,E). In this case most of the DmCdc6 protein was still seen to be nuclear, indicating that in the Drosophila system DmCdc6 remains nuclear throughout S phase. Although the protein remained nuclear, aphidicolin-blocked cells did consistently show an increased proportion of the DmCdc6 in the nucleoplasm rather than being tightly bound into the nucleus.
Finally, we looked at the situation in nondividing cells. In metazoans when cells enter a quiescent state the levels of Cdc6 can be seen to decrease dramatically. Nondividing S2 cells were produced by allowing the cells to grow to a high density (10 days) at this point no further increase in cell numbers was detected and the cells were largely in G2 (Fig. 2G). Fig. 2F shows the results that were obtained when equal numbers of dividing and nondividing cells were examined for the presence of DmCdc6. (Equal loading was also checked by staining the western blots using anti tubulin antibodies data not shown.) From these results it is clear that these cells do not contain detectable levels of DmCdc6. We have also noted that for cells approaching a nondividing state a high percentage of the protein is often observed in the nucleoplasmic fraction (data not shown). To check if the lack of DmCdc6 in nondividing cells is due to the cells being in the G2 phase of the cycle, S2 cells were enriched for G2 cells using ecdysone as described previously (MacAlpine et al., 2004) (Fig. 2I). When western blotting was used to compare the amount of DmCdc6 in these cells with the levels in unsynchronised cells no significant differences were observed (Fig. 2H).
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S2 cells lacking DmCdc6 were less healthy than mock treated controls. Analysis of cell counts suggested that the doubling time of the depleted cells was severely compromised (Fig. 3C). More detailed examination of these cells by FACS analysis (Fig. 3D) revealed that as early as day 3 after RNAi addition there was a significant increase in the numbers of the treated cells that were in the S phase of the cell cycle, suggesting that they were having problems in passing through this stage. In addition, we also saw a significant number of cells that had sub-G1 DNA content. The numbers of cells in both of these categories increased at longer time points. Abnormalities in the cells were also observed when they were studied by indirect immunofluorescence. At day 3 in the experiment approximately 10% of cells were seen to have the phenotype that is shown in Fig. 4A. In these cells the DNA staining can be seen to localise in several clumps in the nuclear region. Costaining of the cells with tubulin suggested that although some DNA clumps were seen in cells with interphase-like tubulin staining, most were seen in cells that had mitotic tubulin staining. At later days (5, 7) up to 30-40% of the cells were seen to be in this state. The number of DNA clumps visible in the cells varied between 5 and 20, so there was no direct correlation between the number of clumps and the number of chromosomes in the cells. These sorts of figures are never observed in mock treated or untreated cells.
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One explanation for what we observed is that the DNA is fragmented due to the cells having undergone apoptosis. Apoptosis usually results in the blebbing of the nucleus and the production of fragmented DNA within a single nucleus. However, in this case staining of the cells with DNA and anti-lamin antibodies (Fig. 4B) suggests that the clumps of DNA are enclosed inside several nuclear lamina each lamina containing significantly less DNA than would be expected for a single intact nucleus. Additional evidence that the phenotypes were not caused by apoptosis was obtained using the apoptosis inhibitors MG132, proteosome inhibitor 1 and lactocystin, which either alone or in combination with each other inhibit the apoptosis induced by cycloheximide treatment of S2 cells (data not shown) (Fraser et al., 1997). If cells that had been treated with RNAi against Dmcdc6 were treated with these inhibitors from the start of the experiment it did not alter the phenotype that was observed (data not shown). It therefore does not seem likely that the cells have undergone apoptosis. A second explanation for the DNA clumps is that the cells have entered mitosis with incompletely replicated DNA. This would be expected to lead to premature chromosome condensation and/or DNA fragmentation. To determine whether this might be the case we stained the cells with antibody that recognises the mitosis-specific phosphorylation of H3 on serine 10. This modification has recently been used extensively in both Drosophila and other systems to indicate that the chromatin is in a mitotic state (Taylor, 2004
). In all, 40-50% of the cells that had been treated with RNAi against DmCdc6 gave a positive reaction with the phospho-H3 antibody compared with 2.5% for those cells that had been mock treated. Co-staining of the cells for DNA and tubulin showed that some H3 phospho staining could be seen in cells with interphase characteristics. However, in most cases H3 phospho-positive cells had mitotic characteristics and there was a high degree of correlation between cells with DNA clumps and those that stained positive for H3 phospho (Fig. 5). This suggests that the chromatin in these cells is in a mitotic state, even though from FACS analysis substantial amounts of the chromatin did not seem to have been fully replicated. Notably, although most of the chromatin clumps in the Dmcdc6 RNAi-treated cells stained with the anti-H3 phospho antibody, in some cells it was possible to see clumps of DNA that are negative for this staining.
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Owing to the high degree of homology between cdc6 and DmORC1 it was formally possible that any effects that were observed on Dmcdc6 RNAi treatment of S2 cells might have been caused by a decrease in the amount of ORC1 in the cell. To control for this, RT-PCR reactions were also carried out to look at the effect of the DmCdc6 RNAi experiment on DmORC1 levels. As can be seen from Fig. 3B, the RNAi treatment that we carried out showed no effect on the level of DmORC1 in these cells.
Overexpression of DmCdc6 in S2 cells causes a slight S/G2 delay
With the exception of S. pombe, overexpression of wild-type Cdc6/18 proteins has been seen to have only subtle effects on nonsynchronised cells. Overexpression studies in higher eukaryotes have mainly been done, however, by injecting protein into cells or transient protein expression. We were therefore interested to determine whether stable overexpression of high levels of DmCdc6 in S2 cells might have a more dramatic effect. We therefore constructed Drosophila cell lines containing additional copies of DmCdc6 using the Invitrogen PMTV/HisA system. In this system the protein is under the control of the metallothionein promoter so that the protein is not constitutive but can be induced by the addition of copper. The expressed protein is tagged with SV5 and hexahis at the C terminus; this makes its apparent size about 3 kDa larger on PAGE. It is therefore distinguishable from the endogenous protein on high-resolution gels. Several independent cell lines were obtained and we chose to characterise two of these, expressing DmCdc6 at different levels (10x or 30-40x endogenous protein levels) (Fig. 6). Although this system is inducible, in our hands the expression of the protein appeared to be somewhat leaky (see Fig. 6), and therefore we were not able to get a true uninduced control with these lines. However, the characterisation of two independent lines should rule out the possibility that the results that we got were due to the insertion sites of the stable transformant.
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In terms of the growth characteristics of the cells, neither the low- nor high-expressing cell line was significantly different from what was seen for the control S2 line (data not shown), although some reduction in growth in all cases was caused by the addition of the inducing copper. FACS analysis on both of the overexpressing lines, however, showed that they differed from the control cells in the same way both of them showed a slightly increased tendency to delay in the late S/G2 phase of the cycle (Fig. 7A). Although the effect observed was very subtle, it was completely reproducible in several independent experiments. Immunofluorescent staining using reagents to visualise DNA, tubulin and lamin did not show any significant differences between the stably transfected and the control S2 cells (data not shown). One possible explanation for the observed lack of effect of overexpressed DmCdc6 was that even though we had observed the overexpressed protein in cell extracts it was not localising properly to the nucleus. However, Fig. 7B shows that this is not the case as both of the overexpressed proteins could be seen in the chromatin-associated fraction of the cell. This was further confirmed by the immunostaining of the cells (Fig. 7C). Despite the correct localisation of the overexpressed DmCdc6 proteins it was still possible that some aspect of the construction had inactivated these proteins. Therefore, to show that this was not the case we knocked out the expression of the endogenous DmCdc6 protein in these overexpressing cell lines by targeting RNAi to the upstream untranslated region of the DmCdc6 mRNA (see Fig. 3A). This caused a reduction in the level of the endogenous RNA to undetectable levels while not measurably affecting the amount of DmCdc6 mRNA produced from the overexpressed proteins (Fig. 7D). Overexpressing cells in which the endogenous DmCdc6 had been removed were not noticeably affected by the removal of the endogenous DmCdc6 as they continued to grow as well as the cells in which no RNAi had been performed (Fig. 7E). In addition, analysis of the FACS profiles for these cells also failed to show a significant difference between the cells with and without RNAi (data not shown). We therefore conclude that the reason that the overproduced DmCdc6 did not have an effect is not related to the lack of activity of the overexpressed protein, and therefore that constitutive expression of high levels of DmCdc6 in agreement with what has previously been seen for transient expression has very little effect on the behaviour of higher eukaryotic cells.
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Discussion |
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Overexpression of DmCdc6
Most of the previous studies carried out to look at the effects of overexpression of Cdc6 in higher eukaryotes have involved protein microinjection or transient expression. These studies suggest that the effects of this overexpression in nonsynchronised cells are very limited. Using Drosophila S2 cells it is possible to make stable cell lines that express DmCdc6 under an inducible promoter to high levels. The levels and duration of expression in this type of system are more likely to reveal overexpression effects of the protein. Furthermore, the tight chromatin association of the bulk of the DmCdc6 overexpressed in this way, and the ability of the overexpressed protein to substitute when the endogenous cellular DmCdc6 has been removed by RNAi suggests functionality of the protein. Despite this, in agreement with earlier studies in other systems, we see that even the highest level of overexpression of the protein does not have a drastic effect on the cells in particular, we see no evidence of over replication of chromatin. We do, however, see a small but reproducible lag in the G2/M transition of these cells. In human cells injection of Cdc6 into synchronised G2 cells has been reported to block entry into mitosis, which has been attributed to a role for Cdc6 in linking the S and M phases of the cell cycle. Our data are suggestive of a similar mechanism operating in Drosophila cells.
Underexpression of DmCdc6
The most penetrative event that is observed when the DmCdc6 protein is removed from Drosophila cells is the inability of the cells to progress through the S phase of the cell cycle (as observed by FACS analysis). This suggests, unsurprisingly, that as for other organisms the DmCdc6 protein plays a vital role in DNA replication. Further analysis of the cells by immunofluorescence does not, however, show cells that are arrested with S phase morphology. A high percentage of the cells although they do not apparently have fully replicated DNA have passed into mitosis, as measured by the presence of the phospho-H3 antigen on the chromatin. A few of these cells have a morphology that looks like premature chromatin condensation (PCC). PCC has often been observed during the analysis of larvae carrying mutations in Drosophila replication proteins (Krause et al., 2001; Loupart et al., 2000
; Pflumm and Botchan, 2001
). In addition, depletion of other replication proteins in S2 cells (cdc45, MCM2, MCM5 and MCM10) has also been reported to show PCC (Christensen and Tye, 2003
). For many of the DmCdc6-depleted cells, however, the phenotype looks more severe as the DNA appears to be heavily fragmented, spindles are often present and in some cases subgenome quantities of DNA appear to be surrounded by individual nuclear laminae. This phenotype has some similarities with what has been observed for Drosophila cdt1 RNAi in S2 cells (Mihaylov et al., 2002
) and also with the cut phenotype obtained from knocking out the S. pombe Cdc6 homologue cdc18 (Kelly et al., 1993
). The observed state of these DmCdc6-depleted S2 cells suggests that, in addition to their replication defect, they are also missing a checkpoint to prevent mitotic entry with unreplicated DNA. The observation of spindles and nuclear laminar reformation around subgenomic DNA masses further suggest that several aspects of the cell cycle, not just the chromosome cycle, are also affected. This, therefore, provides further evidence that in Drosophila as well as in other higher eukaryotes the Cdc6 protein may have a second role in the cell cycle concerned with the co-ordination of the S and M phases.
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Acknowledgments |
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