Article |
Address correspondence to Mary Dasso, Laboratory of Gene Regulation and Development, National Institute of Child Health and Human Development, National Institutes of Health, Building 18, Room 106, 18 Library Drive, MSC-5431, Bethesda, MD 20892-5431. Tel.: (301) 402-1555. Fax: (301) 402-1323. email: mdasso{at}helix.nih.gov
![]() |
Abstract |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Key Words: topoisomerase II; SUMO-1; SUMO-2; mitosis; chromosome segregation
Abbreviations used in this paper: CSF, cytostatic factor; dnUbc9, dominant-negative mutant of Ubc9; His-SUMO, His6-tagged SUMO.
![]() |
Introduction |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Fission and budding yeast each contain a single SUMO family protein, pmt3 and Smt3p, respectively. These proteins have been implicated in the regulation of the cell cycle in both organisms. In fission yeast, pmt3- mutants undergo aberrant mitosis and display high frequency loss of minichromosomes (Tanaka et al., 1999). pmt3- mutants are also sensitive to increased temperature, UV light, DNA-damaging agents, and replication inhibitors. Mutations in the E1 and E2 proteins for pmt3 cause aberrant cell morphology, condensed and/or fragmented chromosomal DNA, mini-chromosome instability, and cells with a "cut" morphology even in the absence of radiation treatment (al-Khodairy et al., 1995; Shayeghi et al., 1997). In budding yeast, inhibition of Ubc9p synthesis blocks cell cycle progression at G2/M phase, stabilizing cyclin proteins and causing the accumulation of large budded cells with a short spindle, a single nucleus, and fully replicated DNA (Seufert et al., 1995). Moreover, budding yeast have two Smt3p isopeptidases (Ulp1p and Ulp2p/Smt4p), and disruption of either of these proteins causes defective cell cycle control. Temperature-sensitive ulp1-ts mutants arrest in the G2/M phase of the cell cycle at the restrictive temperature (Li and Hochstrasser, 1999). With prolonged incubation at elevated temperatures, ulp1-ts mutants eventually pass through mitosis and show aberrant chromosome structures, consistent with severe chromosome damage or missegregation (Li and Hochstrasser, 1999). Ulp2p/Smt4p mutants display decreased plasmid and chromosome stability, as well as failure to recover from checkpoint arrest after treatment with DNA-damaging agents, DNA replication inhibitors, or microtubule poisons (Li and Hochstrasser, 2000).
One underlying cause of the cell cycle phenotypes in budding yeast is likely to be a requirement for modification of topoisomerase II (Top2p) by Smt3p in order to release centromeric cohesion at anaphase. SMT3 was found among a number of genes whose mutants showed inability to correctly segregate chromosomes at the metaphaseanaphase transition (Biggins et al., 2001), and ULP2/SMT4 was reported as an overexpression suppressor of mutations in condensin subunits required for mitotic chromosome condensation (Strunnikov et al., 2001). More recently, Bachant et al. (2002) examined the recovery of budding yeast cells from DNA damage arrest in smt4- mutants and discovered that the cells were delayed in metaphase, with their chromosomes abnormally stretched along the spindle axis. Examination of sister chromatid separation at different chromosomal positions demonstrated that centromeric cohesion was specifically decreased in smt4-
mutants. Top2p was suggested to be one of the substrates responsible for this phenotype, because top2 mutants lacking Smt3p modification sites could significantly suppress the smt4 centromeric cohesion defect. Human topoisomerase II
and ß have been reported to be substrates for conjugation with SUMO-1, and topoisomerase II inhibitors stimulate this modification (Mao et al., 2000). However, there has not been any report suggesting cell cycleregulated SUMO-1 conjugation of vertebrate topoisomerase II. The mechanisms whereby Smt3p or SUMO-1 regulate topoisomerase II have not been reported in any organism.
Genetic evidence suggests that topoisomerase II plays crucial roles in both chromosome condensation and segregation during mitosis (Uemura et al., 1987). Moreover, a number of observations have shown that topoisomerase II is directly required for the assembly of condensed chromosomes in mitotic Xenopus egg extracts; topoisomerase II depletion from egg extracts blocks condensation of chromosomes from chicken erythrocyte nuclei (Adachi et al., 1991), and chemical inhibition of topoisomerase II prevents remodeling and condensation of sperm nuclei chromosomes (Hirano and Mitchison, 1993). The requirement for topoisomerase II in sister chromatid segregation can be distinguished from its role in mitotic chromosome assembly in egg extracts because chemical inhibition of topoisomerase II by VP-16 at the metaphaseanaphase transition blocks sister chromatid separation despite the assembly of intact chromosomes before VP-16 addition (Shamu and Murray, 1992). The behavior of topoisomerase II in metazoan cells during mitosis has been somewhat controversial. Early experiments indicated that topoisomerase II is tightly associated with the scaffold fraction of mitotic chromosomes (Gasser et al., 1986), and that it is distributed along with chromatid axis during metaphase (Earnshaw and Heck, 1985). From these results, it was suggested that topoisomerase II is a major structural component of mitotic chromosomes. On the other hand, the bulk of topoisomerase II can be eluted under mild, low salt conditions from mitotic chromosomes formed in Xenopus egg extracts, arguing against the notion that it is an integral component of a chromosomal scaffold (Hirano and Mitchison, 1993). Recent live-imaging experiments have shown that topoisomerase II is highly dynamic on chromosomes during mitosis (Christensen et al., 2002; Null et al., 2002; Tavormina et al., 2002). The mechanisms controlling the dynamic association of topoisomerase II to chromosomes have not been clarified.
We used Xenopus egg extracts to examine cell cycledependent changes in SUMO-conjugated proteins. We found a set of high mol wt, chromatin-dependent mitotic SUMO-containing species, which protein sequencing revealed to be SUMO-conjugated topoisomerase II. Topoisomerase II is modified exclusively by SUMO-2/3 during mitosis under normal circumstances, although we could observe SUMO-1 conjugation of topoisomerase II in extracts with exogenous SUMO-1 protein. In cycling extracts, SUMO-2/3 modification of topoisomerase II was maximal in metaphase, followed by rapid deconjugation during anaphase. Blocking SUMO modification using a dominant-negative mutant of Ubc9 (dnUbc9 = Ubc9-C93S, L97S; Banerjee et al., 1995) did not detectably alter the activity of topoisomerase II on chromatin assembled in egg extracts. However, dnUbc9 increased the amount of unmodified topoisomerase II retained on mitotic chromosomes after high salt washing. dnUbc9 did not arrest the progression of cycling extracts through mitosis, nor did it alter the assembly of condensed chromosomes in mitotically-arrested extracts. By contrast, dnUbc9 clearly disrupted the dissociation of sister chromatids at the metaphase-anaphase transition. Together, these findings indicate that SUMO-2/3 conjugation does not drastically alter topoisomerase II enzymatic activity, but this modification is important for remodeling of topoisomerase II on mitotic chromosomes at the metaphase-anaphase transition. Failure of such remodeling could clearly play an important part in chromosome missegregation when SUMO conjugation is blocked.
![]() |
Results |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
|
Topoisomerase II is modified by conjugation to SUMO-2/3
To identify the origin of the 200-kD conjugated species found in M phase, we prepared a large-scale CSF extract reaction with a high concentration of added sperm nuclei and His-SUMO-1. After a 60-min incubation, we made a crude separation of chromatin-associated proteins by centrifugation. We observed by Western blotting that the desired species fractionated with the DNA (unpublished data). The His-SUMO-1conjugated proteins from the chromatin fraction were solubilized in a buffer containing 8 M urea, and the recovered fraction was subjected to further purification using metal affinity chromatography. Upon silver staining, the resultant fraction showed a clear set of bands in the appropriate mol wt range >200 kD that were strongly recognized on Western blots by anti-SUMO-1 antibodies. These bands were isolated and subjected to protein sequencing at the Harvard Microchemistry Facility (Cambridge, MA). Protein sequence analysis showed that these conjugated species arose from His-SUMO-1 conjugation of topoisomerase II.
To confirm that topoisomerase II is modified by SUMO-1 conjugation in the absence of exogenous His-SUMO-1, we analyzed CSF egg extracts with or without exogenous SUMO-1 or dnUbc9 by Western blotting with anti-topoisomerase II antibodies (Fig. 2 A; Luke and Bogenhagen, 1989). Antibodies directed against topoisomerase II recognized a ladder of bands in the presence or absence of exogenous SUMO-1 protein. Consistent with the idea that these bands arose from conjugation to SUMO-1, they were abolished by the addition of dnUbc9 (Fig. 2 A, left). However, we were surprised to find that antibodies against SUMO-1 did not recognize any bands corresponding to conjugated topoisomerase II in the absence of exogenous SUMO-1 protein (Fig. 2 A, middle).
|
Because our earlier results demonstrated that exogenously added SUMO proteins have the capacity to distort the normal pattern of substrate modification, we wished to analyze SUMO-2/3 conjugation to topoisomerase II in unperturbed extracts, relying solely upon the endogenous proteins. First, we wished to confirm whether modification of topoisomerase II is limited to M-phase. To do this, we compared the pattern of SUMO-2/3conjugated topoisomerase II on chromatin isolated from interphase and CSF-arrested egg extracts (Fig. 2 B). Western blotting with anti-SUMO-2/3 antibodies and four different anti-topoisomerase II antibodies showed that the conjugated forms of topoisomerase II were exclusively found in chromatin fraction from CSF extracts, leading us to conclude that this modification is truly M-phasespecific. Next, we examined the level of conjugated topoisomerase II as a function of added sperm chromatin (Fig. 2 C). The dependency of SUMO conjugation on the relative concentration of chromatin was easily observed when we purified chromosomes from reactions containing different initial concentrations of sperm chromatin by centrifugal separation through a sucrose cushion. When equal concentrations of sperm chromatin from each reaction were loaded in adjacent lanes of a Western blot, the amount of topoisomerase IISUMO-2/3 was essentially identical, irrespective of the initial concentration of sperm chromatin in the incubations (Fig. 2 C). These data suggest that sperm chromosomes have a defined and saturable capacity to generate and/or stabilize topoisomerase IISUMO-2/3 conjugates.
Together, our results indicate that topoisomerase II is conjugated to SUMO-2/3 in an M-phase and chromatin-dependent manner, although SUMO-1 can compete with SUMO-2/3 in this conjugation reaction if it is present at abnormally high concentrations.
Modification of DNA topoisomerase II by endogenous SUMO-2/3
To investigate the timing of endogenous topoisomerase II modification more closely during the mitotic cell cycle, we used cycling extracts, which oscillate spontaneously and synchronously between interphase and mitosis (Kornbluth et al., 2001). We added sperm chromatin coincident with the start of the reaction and followed progression through the cell cycle by chromosome morphology (unpublished data), cyclin B abundance, and ERK1 phosphorylation (Fig. 3). Aliquots of the reaction were taken at the indicated intervals. Chromatin was prepared from these aliquots and equivalent chromatin recovery at each time point was verified by Western blotting using antibodies against the embryonic linker histone B4 (unpublished data; Dasso et al., 1994). The modification status of chromatin-associated topoisomerase II was determined by Western blotting with anti-topoisomerase II and anti-SUMO-2/3 antibodies. Examination of chromosome morphology suggested that the extract entered mitosis at 65 min, and that anaphase onset occurred at
80 min. This timing was confirmed by both the profiles of cyclin B degradation and ERK1 phosphorylation. On Western blots using anti-topoisomerase II antibodies, we observed that the maximum level of topoisomerase II conjugation occurred during metaphase at
75 min, close to the maximum level of cyclin B accumulation. The level of conjugated species rapidly declined as the extract passed through the metaphaseanaphase transition, and we detected no conjugated topoisomerase II in the chromosomal fraction by 95 min.
|
These findings further illustrate the specificity and chromatin dependence of topoisomerase II modification by SUMO-2/3 during the unperturbed egg extract cell cycle, and show that SUMO-1 is not a major modifier of topoisomerase II in cycling extracts. Moreover, this experiment documents the close coincidence between anaphase and the deconjugation of topoisomerase II under normal conditions.
SUMO-2/3 modification regulates the chromatin dynamics of topoisomerase II
Next, we examined whether modification by SUMO-2/3 significantly alters the biochemical behavior or chromatin association of mitotic topoisomerase II. We extracted topoisomerase from mitotic chromosomes produced in egg extracts with or without dnUbc9. This allowed us to obtain a preparation of topoisomerase II that was enriched in the SUMO-conjugated form (Fig. 4 B; 20% modified) and a comparable preparation that did not have modified topoisomerase II. When we measured the activity of these preparations for decatenation of kinetoplast DNA, their activity levels were indistinguishable (Fig. 4 A). These results do not eliminate the possibility that SUMO-2 conjugation may inhibit topoisomerase II because this assay is not sufficiently sensitive to detect partial inhibition of the conjugated subpopulation of topoisomerase II. However, the findings in Fig. 4 would be inconsistent with dramatic stimulation of topoisomerase II activity by SUMO-2 conjugation.
|
|
As an alternative assay for the capacity of dnUbc9 to influence the association of topoisomerase II with chromosomes, we examined extracted chromatin by immunofluorescence using anti-topoisomerase II antibodies. Consistent with our biochemical observations, a high level of topoisomerase II remained associated with chromatin that had been extracted with CSF-XB buffer (100 mM KCl), but there was a much lower level of staining after treatment with CSF-XB buffer plus 200 mM NaCl (final salt concentration = 200 mM NaCl + 100 mM KCl; this buffer will be referred to as high salt CSF-XB; Fig. 5 C). It was noticeable that although distribution of topoisomerase II on the chromatin in the CSF-XBwashed chromatin was relatively uniform, the residual topoisomerase II retained after washing with high salt CSF-XB was punctate.
The presence of dnUbc9 throughout the chromosome assembly reaction did not change the morphology of chromosomes washed at either salt concentration. When extractions were performed with CSF-XB buffer, staining of chromosomes assembled with or without dnUbc9 showed very similar patterns, with topoisomerase II distribution closely correlating to the distribution of DNA (Fig. 5 C, left panels). By contrast, the amount of topoisomerase II associated with high salt CSF-XBwashed chromatin was dramatically increased by dnUbc9 (Fig. 5 C, right panels). The enhanced staining was not uniform, but clearly distributed into bright foci throughout the chromosomes, suggesting that dnUbc9 increases the specific retention of a particular subpopulation of topoisomerase II. Together with our biochemical data, these findings strongly indicate that SUMO-2/3 modification can alter the chromatin-binding properties of topoisomerase II, promoting conversion of tightly bound topoisomerase II to lower affinity forms.
SUMO conjugation is required for proper mitotic chromosome segregation
Our observations indicated that some tightly chromatin-associated forms of topoisomerase II are conjugated with SUMO-2/3 in order to facilitate their conversion to lower affinity forms. Such conversion could be involved in the removal of the tightly bound topoisomerase II from chromatin, or its remodeling on the chromosome. To test the biological role of mitotic SUMO modification of topoisomerase II and other potential substrates, we evaluated the effect of dnUbc9 on cycling and CSF extracts. In cycling extracts, the addition of dnUbc9 had no detectable effect on sperm chromatin decondensation, the formation of nuclei, DNA replication, or the entry of extracts into mitosis (unpublished data). Furthermore, we could not find any consistent difference between the morphology of mitotic chromosomes assembled in cycling or CSF extracts in the presence or absence of dnUbc9. These findings indicate that SUMO conjugation is not required for any of these processes. By contrast, we saw a significant difference in the behavior of chromosomes at the metaphaseanaphase transition in cycling extracts with and without dnUbc9. Although we could consistently observe segregated sister chromatids in control extracts at anaphase onset, we did not observe chromosome segregation in extracts containing dnUbc9 (unpublished data). Despite the absence of any evident sister chromatid segregation in extracts containing dnUbc9, the extracts progressed out of mitosis and formed nuclei in synchrony with control extracts.
This finding prompted us to evaluate sister chromatid segregation under conditions where we could precisely control the onset of the metaphaseanaphase transition (Fig. 6). To do this, we drove a CSF extract into interphase using CaCl2. Sperm chromatin was added to this extract, and was allowed to form nuclei and to undergo a complete round of DNA replication. The extract was then driven back into mitosis with the addition of fresh CSF extract, and dnUbc9 was added at this point (Fig. 6 A). Spindle assembly was assessed 30 min after the addition of CSF extract, and we could find no distinction between reactions with or without dnUbc9, again suggesting that dnUbc9 does not disrupt chromosome condensation, attachment to spindles, or alignment on the metaphase plate. As with unreplicated chromatin (Fig. 5 B), the bulk of topoisomerase II was extracted from replicated chromatin by washing with buffer containing 300 mM NaCl, although a small fraction of topoisomerase II was retained on the chromatin even after extraction of the chromatin with buffer containing 500 mM NaCl (Fig. S2, available at http://www.jcb.org/cgi/content/full/jcb.200304088/DC1). Distribution of topoisomerase II to the inextractable fraction was increased when dnUbc9 was added as mitosis was induced with fresh CSF extract.
|
Together, our results suggest that there is a small population of topoisomerase II that is tightly associated with mitotic chromosomes, which becomes mobilized for release from chromatin or remodeling on chromosomes through conjugation with SUMO-2/3. Sister chromatid separation is defective when SUMO conjugation is blocked by dnUbc9, indicating that this mobilization and perhaps other events regulated by SUMO conjugation are critical for correct chromosome partitioning during mitosis. Moreover, SUMO-2/3 modification of topoisomerase II is tightly regulated temporally during mitosis, suggesting that the timing of topoisomerase II mobilization is carefully controlled in coordination with other mitotic events.
![]() |
Discussion |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Topoisomerase II is modified exclusively by SUMO-2/3 during mitosis under normal circumstances (Fig. 2). Such discrimination between different SUMO isoforms is noteworthy for two reasons. First, little has been elucidated about the functional differences between SUMO-1, -2 and -3. Our data show that there is strong cell cycle specificity in the use of these three SUMO isotypes, such that SUMO-1 conjugates are predominant during interphase in egg extracts, whereas SUMO-2/3 conjugates predominate during mitosis. Although we do not yet understand the molecular basis for this cell cycle preference, we have discovered that the SUMO-2/3 conjugation of topoisomerase II is tightly controlled during metaphase by mitotic kinases (unpublished data). This regulation suggests that topoisomerase II conjugation to SUMO-2/3 is closely coupled to other events occurring during mitosis. Second, exogenous SUMO-1 has the capacity to become conjugated to topoisomerase II in mitotic extracts when it is added above physiological levels, suggesting that it can override the normal controls regulating isoform selectivity during mitosis. Given that these proteins share a common set of activating and conjugation enzymes, the loss of specificity could result from direct competition between SUMO isoforms. The capacity of SUMO-1 to compete for mitotic conjugation to topoisomerase II raises the possibility that other proteins previously reported to be SUMO-1 substrates may, in fact, be more typically modified by SUMO-2 or -3.
Several findings suggest that topoisomerase II does not require SUMO-2/3 conjugation for its decatenation activity. First, only a fraction of topoisomerase II is modified by SUMO-2/3, even at the height of mitosis (Fig. 3). In most chromosomal preparations, Western blotting showed 20% of topoisomerase II is converted into SUMO modified forms (Fig. 2 B), although it is difficult to quantitate the fraction of modified topoisomerase II precisely because different antibodies appear to recognize SUMO-2/3conjugated topoisomerase II with different efficiencies. More importantly, we blocked all SUMO conjugation in cycling and CSF extracts using dnUbc9, and we confirmed that dnUbc9 was highly efficient in blocking the SUMO-2/3 conjugation of topoisomerase II (Fig. 2). Chromatin preparations from these reactions were used as a source for further purification of topoisomerase II. We found that topoisomerase II from chromatin assembled with or without dnUbc9 had indistinguishable levels of activity for decatenation of kinetoplast DNA (Fig. 4). Finally, we assayed nuclear assembly, nuclear transport, DNA replication, mitotic chromosome condensation, mitotic chromosome structure, and spindle assembly using extracts with our without added dnUbc9 (Fig. 6; unpublished data). We did not find differences between extracts with or without dnUbc9 in any of these assays. Although many of these processes require topoisomerase II activity, they clearly did not require de novo SUMO conjugation of topoisomerase II or other substrates.
By contrast, dnUbc9 disrupted chromosome segregation at the metaphaseanaphase transition in egg extracts (Fig. 6). It is clearly possible that the lack of conjugation for many substrates may have contributed toward this phenotype. However, several arguments suggest that the failure to conjugate topoisomerase II and the resultant failure to promote its partitioning into lower affinity fractions may be among the key factors responsible for defective chromosome segregation: First, topoisomerase II is by far the most abundant target of SUMO conjugation on mitotic chromosomes (Fig. 3). Second, topoisomerase II poisons, such as VP-16, which cause the accumulation of arrested topoisomerase IIDNA complexes, produce chromosome segregation defects that are remarkably similar to dnUbc9 (Fig. 6; Shamu and Murray, 1992). Notably, topoisomerase II inhibitors that do not cause accumulation of arrested topoisomerase IIDNA complexes, such as Merbarone (Fortune and Osheroff, 1998), do not block chromosome segregation despite the fact that they produce comparable levels of inhibition in decatenation assays (unpublished data). Finally, consistent with our conclusion that SUMO conjugation regulates chromosome segregation in egg extracts, misregulated Smt3p conjugation in smt4- mutants of budding yeast can promote premature loss of centromeric cohesion (Bachant et al., 2002). top2 mutants lacking Smt3p modification sites could suppress this defect, suggesting that Top2p is one of the primary substrates whose conjugation to Smt3p can alter cohesion.
It may be appropriate to reevaluate the role of topoisomerase II on mitotic chromosomes. It was initially suggested that topoisomerase II forms part of a tightly bound chromosome scaffold (Earnshaw and Heck, 1985), but this view was overturned by the observation that the bulk of topoisomerase II can be removed from in vitroassembled chromosomes without significant changes in chromosome structure (Hirano and Mitchison, 1993). More recent demonstrations that the majority of topoisomerase II is extremely dynamic on mitotic chromosomes (Christensen et al., 2002; Null et al., 2002; Tavormina et al., 2002) also argue against a static role for topoisomerase II as a chromosome scaffold. On the other hand, we find that there is a small population of topoisomerase II that is very tightly bound to mitotic chromatin, being retained even after extraction in a 500-mM NaCl-containing buffer. dnUbc9 enlarged this population, showing that SUMO-2/3 conjugation negatively controls the apportionment of topoisomerase II to such tightly bound forms. Our findings present the interesting idea that this small, high affinity fraction of topoisomerase II may act as part of a dynamic tether between sister chromatids, and that its removal at the metaphaseanaphase transition may be an essential event during chromosome distribution into daughter cells.
![]() |
Materials and methods |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Rabbit polyclonal anti-SUMO-1 antibodies were raised against the processed form of human SUMO-1 (Research Genetics). Untagged, recombinant SUMO-1 (processed form) was coupled to CNBr-activated Sepharose (Amersham Biosciences) and used for affinity purification of the antibodies from immune sera. Rabbit pAbs against SUMO-2/3 were provided by H. Saitoh (Saitoh and Hinchey, 2000). Untagged, recombinant SUMO-2 (processed form) was coupled to CNBr-activated Sepharose (Amersham Biosciences) and used for affinity purification of the antibodies from immune sera. Mouse mAbs against Xenopus cyclin B2 were provided by T. Hunt, (Cancer Research UK, South Mimms, UK). Monoclonal antihuman topoisomerase II/ß (Fig. 2 B, lanes 1 and 2), monoclonal antihuman topoisomerase II
(Fig. 2 B, lanes 3 and 4), and rabbit polyclonal antihuman topoisomerase II
(Fig. 2 B, lanes 5 and 6) were purchased from Research Diagnostics, Inc. Rabbit pAbs against Xenopus topoisomerase II
/ß (Fig. 2 B, lanes 7 and 8) were as described previously (provided by Dr. P.L. Jones, University of Illinois at Urbana-Champaign, Urbana, IL); Luke and Bogenhagen, 1989). Unless otherwise indicated, Western blotting was performed using antiXenopus topoisomerase II
/ß. Antibodies against phosphorylated ERK1/2 were purchased from Cell Signaling.
Xenopus egg extracts and cell cycle analysis
Xenopus sperm nuclei, low speed extracts of Xenopus eggs arrested by CSF, and cycling extracts were prepared as described previously (Kornbluth et al., 2001). For visualization of spindles, rhodamine-labeled tubulin (Cytoskeleton, Inc.) was added to a final concentration of 0.1 mg/ml, as indicated. In cases where reactions were supplemented with exogenous proteins, the proteins were added to the extract and incubated on ice for 5 min before the addition of sperm chromatin and the initiation of the experiment by transfer of the reaction to 23°C, unless otherwise indicated. In Fig. 6, destruction of securin was monitored as described previously (Arnaoutov and Dasso, 2003).
Isolation of chromatin from egg extract
For preparation of chromatin from CSF or cycling extracts, 100-µl aliquots of each reaction were diluted fivefold with CSF-XB buffer (10 mM Hepes-KOH, pH 7.7, 100 mM KCl, 2 mM MgCl2, 5 mM EGTA, and 50 mM sucrose) containing 0.5% Triton X-100, and were incubated for 1 min at RT. The samples were then layered onto a 40% glycerol-containing CSF-XB cushion, and centrifuged at 10,000 g for 10 min at 4°C. The pellets were resuspended in 40% glycerol-containing CSF-XB, and the centrifugation was repeated. 50 µl SDS-PAGE sample buffer was added to the resulting pellet, and the sample was heated to 100°C for 5 min.
Preparation of chromatin-bound topoisomerase II and decatenation assay
Chromatin was prepared from 500 µl of egg extract with or without 150 ng/µl dnUbc9 containing 10,000 sperm nuclei/µl as described above, except that the elution was performed with 100 µl XB buffer supplemented with 5 mM ß-glycerol phosphate and 300 mM NaCl instead of sample buffer. DNA and other insoluble material was removed by centrifugation at 20,000 g for 15 min. The post-chromosomal supernatant from this elution was assayed for kinetoplast DNA decatenation using a topoisomerase II assay kit (TopoGEN, Inc.) according to the manufacturer's protocol. Unless otherwise noted, all reactions contained 10 ng/µl of kinetoplast DNA in a 20-µl reaction, and were incubated for 15 min at 23°C. Products of the decatenation assay were analyzed by electrophoresis on 1% agarose gels in TBE. For comparison, decatenation by purified human topoisomerase II is shown in Fig. 4.
Immunofluorescence staining of chromatin
2,000 nuclei/µl sperm chromatin was incubated for 60 min in CSF extract. The reactions were diluted with either CSF-XB buffer (low salt) or CSF-XB buffer supplemented with an additional 200 mM NaCl (high salt), and incubated for 5 min at 23°C. The chromosomes were fixed by addition of an equal volume of the same buffer with 1.6% PFA. After a 10-min incubation at 23°C, the chromosomes were spun through a 20% glycerol cushion onto glass coverslips. Chromatin was stained with monoclonal anti-topoisomerase II/ß antibody (TopoIIA/B; Research Diagnostics, Inc.) at 1/200 dilution for 1 h at 23°C followed by Alexa® 488conjugated antimouse IgG (Molecular Probes, Inc.) for 1 h at 23°C. After DNA was counterstained by 4 µg/ml Hoechst 33342, samples were mounted in medium (Vectashield®; Vector Laboratories) and sealed. Specimens were observed by a fluorescent microscope (Axioskop; Carl Zeiss MicroImaging, Inc.) with either a Plan-neo 63x/1.25 or Iris 100x/1.4 objective (Carl Zeiss MicroImaging, Inc.). Images were taken with a CCD camera (Orca II; Hamamatsu Photonics K.K.) operated by Openlab software (Improvision).
Online supplemental material
Fig. S1 shows that SUMO-2 is preferred over SUMO-3 for mitotic conjugation to topoisomerase II. Fig. S2 shows association of SUMO-2/3modified topoisomerase II with replicated chromatin. Online supplemental material available at http://www.jcb.org/cgi/content/full/jcb.200304088/DC1.
![]() |
Acknowledgments |
---|
This work was supported in part by Human Frontiers Science Program research grant RG0229/1999-M to M. Dasso.
Submitted: 15 April 2003
Accepted: 22 September 2003
![]() |
References |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Adachi, Y., M. Luke, and U.K. Laemmli. 1991. Chromosome assembly in vitro: topoisomerase II is required for condensation. Cell. 64:137148.[Medline]
al-Khodairy, F., T. Enoch, I.M. Hagan, and A.M. Carr. 1995. The Schizosaccharomyces pombe hus5 gene encodes a ubiquitin conjugating enzyme required for normal mitosis. J. Cell Sci. 108:475486.
Arnaoutov, A., and M. Dasso. 2003. The Ran GTPase regulates kinetochore function. Dev. Cell. 5:99111.[Medline]
Azuma, Y., S.H. Tan, M.M. Cavenagh, A.M. Ainsztein, H. Saitoh, and M. Dasso. 2001. Expression and regulation of the mammalian SUMO-1 E1 enzyme. FASEB J. 15:18251827.
Bachant, J., A. Alcasabas, Y. Blat, N. Kleckner, and S.J. Elledge. 2002. The SUMO-1 isopeptidase Smt4 is linked to centromeric cohesion through SUMO-1 modification of DNA topoisomerase II. Mol. Cell. 9:11691182.[Medline]
Banerjee, A., R.J. Deshaies, and V. Chau. 1995. Characterization of a dominant negative mutant of the cell cycle ubiquitin-conjugating enzyme Cdc34. J. Biol. Chem. 270:2620926215.
Biggins, S., N. Bhalla, A. Chang, D.L. Smith, and A.W. Murray. 2001. Genes involved in sister chromatid separation and segregation in the budding yeast Saccharomyces cerevisiae. Genetics. 159:453470.
Christensen, M.O., M.K. Larsen, H.U. Barthelmes, R. Hock, C.L. Andersen, E. Kjeldsen, B.R. Knudsen, O. Westergaard, F. Boege, and C. Mielke. 2002. Dynamics of human DNA topoisomerases II and IIß in living cells. J. Cell Biol. 157:3144.
Dasso, M., S. Dimitrov, and A.P. Wolffe. 1994. Nuclear assembly is independent of linker histones. Proc. Natl. Acad. Sci. USA. 91:1247712481.
Earnshaw, W.C., and M.M. Heck. 1985. Localization of topoisomerase II in mitotic chromosomes. J. Cell Biol. 100:17161725.[Abstract]
Fortune, J.M., and N. Osheroff. 1998. Merbarone inhibits the catalytic activity of human topoisomerase II by blocking DNA cleavage. J. Biol. Chem. 273:1764317650.
Gasser, S.M., T. Laroche, J. Falquet, E. Boy de la Tour, and U.K. Laemmli. 1986. Metaphase chromosome structure. Involvement of topoisomerase II. J. Mol. Biol. 188:613629.[Medline]
Hirano, T., and T.J. Mitchison. 1993. Topoisomerase II does not play a scaffolding role in the organization of mitotic chromosomes assembled in Xenopus egg extracts. J. Cell Biol. 120:601612.[Abstract]
Hochstrasser, M. 2000. Evolution and function of ubiquitin-like protein-conjugation systems. Nat. Cell Biol. 2:E153E157.[CrossRef][Medline]
Kornbluth, S., J. Yang, and M. Powers. 2001. Analysis of the cell cycle using Xenopus egg extracts. Current Protocols in Cell Biology. J.S. Bonifacino, M. Dasso, J. Lippincott-Schwartz, J.B. Harford, and K.M. Yamada, editors. John Wiley & Sons, Inc., New York. 11.11.111.11.13.
Li, S.J., and M. Hochstrasser. 1999. A new protease required for cell-cycle progression in yeast. Nature. 398:246251.[CrossRef][Medline]
Li, S.J., and M. Hochstrasser. 2000. The yeast ULP2 (SMT4) gene encodes a novel protease specific for the ubiquitin-like Smt3 protein. Mol Cell Biol 20:23672377.
Luke, M., and D.F. Bogenhagen. 1989. Quantitation of type II topoisomerase in oocytes and eggs of Xenopus laevis. Dev. Biol. 136:459468.[Medline]
Mao, Y., S.D. Desai, and L.F. Liu. 2000. SUMO-1 conjugation to human DNA topoisomerase II isozymes. J. Biol. Chem. 275:2606626073.
Melchior, F. 2000. SUMOnonclassical ubiquitin. Annu. Rev. Cell Dev. Biol. 16:591626.[CrossRef][Medline]
Null, A.P., J. Hudson, and G.J. Gorbsky. 2002. Both alpha and beta isoforms of mammalian DNA topoisomerase II associate with chromosomes in mitosis. Cell Growth Differ. 13:325333.
Saitoh, H., and J. Hinchey. 2000. Functional heterogeneity of small ubiquitin-related protein modifiers SUMO-1 versus SUMO-2/3. J. Biol. Chem. 275:62526258.
Saitoh, H., D.B. Sparrow, T. Shiomi, R.T. Pu, T. Nishimoto, T.J. Mohun, and M. Dasso. 1998. Ubc9p and the conjugation of SUMO-1 to RanGAP1 and RanBP2. Curr. Biol. 8:121124.[Medline]
Seeler, J.S., and A. Dejean. 2001. SUMO: of branched proteins and nuclear bodies. Oncogene. 20:72437249.[CrossRef][Medline]
Seufert, W., B. Futcher, and S. Jentsch. 1995. Role of a ubiquitin-conjugating enzyme in degradation of S- and M-phase cyclins. Nature. 373:7881.[CrossRef][Medline]
Shamu, C.E., and A.W. Murray. 1992. Sister chromatid separation in frog egg extracts requires DNA topoisomerase II activity during anaphase. J. Cell Biol. 117:921934.[Abstract]
Shayeghi, M., C.L. Doe, M. Tavassoli, and F.Z. Watts. 1997. Characterisation of Schizosaccharomyces pombe rad31, a UBA-related gene required for DNA damage tolerance. Nucleic Acids Res. 25:11621169.
Strunnikov, A.V., L. Aravind, and E.V. Koonin. 2001. Saccharomyces cerevisiae SMT4 encodes an evolutionarily conserved protease with a role in chromosome condensation regulation. Genetics. 158:95107.
Tanaka, K., J. Nishide, K. Okazaki, H. Kato, O. Niwa, T. Nakagawa, H. Matsuda, M. Kawamukai, and Y. Murakami. 1999. Characterization of a fission yeast SUMO-1 homologue, pmt3p, required for multiple nuclear events, including the control of telomere length and chromosome segregation. Mol. Cell. Biol. 19:86608672.
Tavormina, P.A., M.G. Come, J.R. Hudson, Y.Y. Mo, W.T. Beck, and G.J. Gorbsky. 2002. Rapid exchange of mammalian topoisomerase II alpha at kinetochores and chromosome arms in mitosis. J. Cell Biol. 158:2329.
Uemura, T., H. Ohkura, Y. Adachi, K. Morino, K. Shiozaki, and M. Yanagida. 1987. DNA topoisomerase II is required for condensation and separation of mitotic chromosomes in S. pombe. Cell. 50:917925.[Medline]