Article |
Address correspondence to Sandra L. Schmid, The Scripps Research Institute, 10550 N. Torrey Pines Rd., La Jolla, CA 92037. Tel.: (858) 784-2311. Fax: (858) 784-9126. E-mail: slschmid{at}scripps.edu
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Abstract |
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Key Words: AAK1; AP2; clathrin; kinase; endocytosis
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Introduction |
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Clathrin-mediated endocytosis is initiated by the recruitment of AP2 complexes to saturable and protease-sensitive sites on the plasma membrane (PM). AP2 complexes interact directly with tyrosine-based sorting motifs on the cytoplasmic domains of receptors to affect their concentration into coated pits and coordinate the assembly of clathrin (Schmid, 1997). The assembly of clathrin into a lattice is, in turn, thought to drive invagination of the PM and thus facilitate vesicle formation (Musacchio et al., 1999). After coat assembly, the coated pit constricts and pinches off from the PM to form a CCV. This cycle is completed by the disassembly of coat proteins and facilitated by the action of the ATPase, Hsc70 (Hannan et al., 1998; Newmyer and Schmid, 2001), which releases the coat components for another round of clathrin-mediated endocytosis. Although many components of the endocytic machinery have been identified, we lack a full understanding of the mechanisms that regulate the clathrin-mediated endocytic pathway.
Phosphorylation/dephosphorylation of proteins involved in endocytosis has long been implicated as a key regulatory step in controlling clathrin-mediated endocytosis (Pauloin et al., 1988; Robinson et al., 1994; Turner et al., 1999). For example, isolated CCVs appear to contain at least two kinase activities (Pauloin et al., 1984; Bar-Zvi and Branton, 1986). One kinase activity associated with CCVs appears to be casein kinase II, a poly-L-lysineactivated serine/threonine (S/T) kinase, which preferentially phosphorylates the b light chain of clathrin (Bar-Zvi and Branton, 1986). Also present on CCVs is a Ca2+-, calmodulin-, and cAMP-independent and poly-L-lysineinsensitive kinase activity that phosphorylates the adaptor complex component pp50, the µ2 subunit, in vitro (Pauloin et al., 1982, 1984). However, the identity of this kinase is currently unknown. In vivo labeling experiments reveal that the , ß2, and µ2 subunits of the AP2 complex are phosphorylated on serine and threonine residues, and these phosphorylated AP2 complexes are impaired in their ability to bind clathrin cages in vitro (Wilde and Brodsky, 1996). Phosphorylation of AP2 appears to enhance binding to membranes and tyrosine- and leucine-based sorting signals (Fingerhut et al., 2001). Most recently, it has also been found that µ2 phosphorylation is essential for clathrin-mediated transferrin uptake (Olusanya et al., 2001). Moreover, phosphorylation of coat proteins by endogenous kinase(s) activated by exogenous melittin and poly-L-lysine is known to destabilize the clathrin coat of isolated CCVs (Georgieva-Hanson et al., 1988).
Phosphorylation also appears to be important in modulating the function of several other proteins implicated in endocytosis, including dynamin 1, amphiphysins 1 and 2, synaptojanin, epsin, and Eps15. Indeed, these proteins are phosphorylated in resting nerve terminals and coordinately dephosphorylated upon nerve terminal stimulation (Liu et al., 1994; Bauerfeind et al., 1997; Chen et al., 1999; Cousin et al., 2001). Additionally, in vitro evidence suggests that phosphorylation plays a central role in regulating the proteinprotein interactions of amphiphysin with other endocytic components like dynamin 1, synaptojanin 1, AP2, and clathrin (Slepnev et al., 1998).
We have identified a novel S/T kinase, we now call adaptor-associated kinase (AAK)1, by using a phage displaybased protein interaction screen. We find that AAK1 binds directly to -adaptin in vivo and in vitro. Poly-L-lysineindependent kinase assays reveal that AAK1 specifically phosphorylates the µ subunit of the AP complex in vitro. Introduction of the kinase into in vitro stage-specific assays that reconstitute endocytosis shows an inhibitory effect that strongly correlates with phosphorylation of the µ subunit. These results suggest that AAK1 may play a regulatory role in clathrin-mediated endocytosis and that in combination with an as yet unidentified phosphatase(s) AAK1 regulates endocytosis through a phosphorylation/dephosphorylation cycle.
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Results |
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AAK1 localizes to regions active in endocytosis
AAK1 binds directly to AP2. Thus, if AAK1 plays a role in regulating aspects of clathrin-mediated endocytosis we would expect it to be enriched in regions of the cell that are active in endocytosis. To test this idea, rat hippocampal neurons were cultured in the presence of a fluid phase endocytic marker, rhodamine-dextran (Fig. 5 A), and then probed for AAK1 (Fig. 5 B). We found good colocalization of AAK1 with the endocytosed marker in these cells (Fig. 5 C). Indeed, AAK1 colocalized with a variety of components of the endocytic machinery, including clathrin (unpublished data), AP2 (Fig. 5 F), and dynamin 1 (Fig. 5 I), all proteins known to be highly enriched at presynaptic terminals. AAK1 also colocalized to endocytic structures in nonneuronal cells. Immunolocalization of AAK1 in HeLa cells revealed a punctate immunolabeling pattern throughout the cell (Fig. 6 A) that colocalized with AP2 (Fig. 6 C). Interestingly, in migrating cells AAK1 was highly enriched at the leading edge (Fig. 6 D), where it was also found to colocalize with AP2 and clathrin (Fig. 6, F and I, respectively). The localization of AAK1 to sites active in endocytosis and its colocalization with known components of the endocytic machinery is consistent with the hypothesis that AAK1 plays a functional role in regulating clathrin-mediated endocytosis in these regions of the cell.
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AAK1 inhibits AP2-dependent transferrin endocytosis
To test the potential function of AAK1 in clathrin-mediated endocytosis, we employed an in vitro stage-specific perforated cell assay that faithfully reconstitutes early and late stages of endocytosis. This assay measures the ATP- and cytosol-dependent sequestration of receptor-bound biotinylated transferrin (BTfn) into constricted coated pits and coated vesicles (Carter et al., 1993). The addition of purified AP2 complexes, in a concentration-dependent manner, stimulates the formation of coated pits and increases the efficiency of BTfn sequestration into constricted coated pits (Fig. 8 A) (Smythe et al., 1992; McLauchlan et al., 1998). However, supplementing each reaction with 30 µg/ml recombinant AAK1GST fusion protein results in a decrease in AP2-stimulated BTfn sequestration with maximal inhibition at substoichiometric levels of AAK1 relative to APs (Fig. 8 A). From these results, we postulated that the observed inhibition was due to the additional kinase activity of AAK1 in these reaction mixtures. To test this idea, we inactivated AAK1GST fusion protein by preincubation with 1 mM fluorosulphonylbenzoyladenosine (FSBA), an ATP analogue that irreversibly binds to the ATP-binding site and has been demonstrated recently to inactivate the endogenous kinase activity found in AP preparations (Olusanya et al., 2001). Supplementing reactions with 30 µg/ml FSBA-treated AAK1 (free FSBA removed by gel filtration) had little effect on AP2-stimulated BTfn sequestration at AP concentrations up to 173 µg/ml. However, at higher AP concentrations we begin to observe an inhibitory effect, though not to the same magnitude as the addition of untreated AAK1. GST alone was not found to have any effect on AP-stimulated endocytosis (unpublished data). These observations suggest that AAK1 plays a role in AP2-stimulated endocytosis and that the majority of the observed inhibition results from the additional AAK1 kinase activity.
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Discussion |
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µ2 phosphorylation may also be important in regulating interactions between AP2 and clathrin. Yeast two-hybrid screens have defined a direct interaction between ß2-adaptin and µ2 (Page and Robinson, 1995). It has also been found that the AP2 interaction with clathrin is mediated through the hinge region of ß2 (Shih et al., 1995) and phosphorylated APs are impaired in their ability to bind clathrin cages in vitro (Wilde and Brodsky, 1996). Although the phosphorylated AP subunits responsible for preventing interaction with clathrin have not been defined, it is reasonable to postulate that conformational changes in µ2 and/or ß2 that result from µ2 phosphorylation might play a regulatory role in AP2clathrin interaction.
Recently, µ2 phosphorylation has been shown to be required for clathrin-mediated endocytosis of transferrin (Olusanya et al., 2001). Olusanya and colleagues found that by preventing the phosphorylation of µ2, either by inhibiting the endogenous kinase activity found in AP2 preparations with the ATP analogue, FSBA, or by site-directed mutagenesis of the µ2 phosphorylation site, transferrin uptake was inhibited in vitro and in vivo, respectively. In contrast, we find that supplementing endocytosis assays with AAK1, an endogenous kinase in AP2 preparations, and thus increasing the phosphorylation state of µ2, results in an inhibitory effect. However, we do not believe these two results are contradictory. The experiments of Olusanya et al. (2001) allow for a single round of µ2 phosphorylation, whereas the addition of AAK1 in our experiments allows for multiple rounds of phosphorylation. Together, these results suggest that, although µ2 phosphorylation is essential for endocytosis, maintaining µ2 in a phosphorylated state, by the addition of exogenous AAK1, results in an inhibition of transferrin uptake. This suggests that a protein phosphatase is required in clathrin-mediated endocytosis to dephosphorylate µ2. Interestingly, AP2 preparations are known to copurify with a phosphatase activity that efficiently dephosphorylates APs during AP complex purification (Morris et al., 1990). Similarly, analyses of coated membrane proteins in intact neurons failed to detect µ2 phosphorylation (Keen and Black, 1986), which hints at the presence of an active µ2 phosphatase in these cells. Although this is in contrast with the observed µ2 phosphorylation in nonneuronal cells (Wilde and Brodsky, 1996), this difference may reflect the relative activities of the clathrin-mediated endocytic pathway in neuronal verses nonneuronal tissues.
Given these observations, we hypothesize that AAK1 functions to phosphorylate µ2 and facilitate AP2 recruitment to tyrosine- and leucine-containing sorting signals. The binding of AP2 to sorting signals could then facilitate the concentration of cargo molecules through AP self-assembly properties. Once concentration of cargo has occurred, an as yet unidentified phosphatase would be required to dephosphorylate µ2 and allow AP2 to interact with clathrin and progress through the process of vesicle formation. This simple model predicts that endocytosis is tightly regulated by cycles of phosphorylation/dephosphorylation. However, it is most likely an oversimplification given that several other components of the endocytic machinery are known to be coordinately phosphorylated/dephosphorylated during the cycle of clathrin-mediated endocytosis. Whether AAK1 phosphorylates other components of the endocytic machinery awaits determination.
It is interesting to note that Prk1p, an Ark kinase family member, regulates Pan1p activity by phosphorylation. Pan1p is a yeast homologue of Eps15, a protein known to function in endocytosis (Wendland and Emr, 1998), and is marked for phosphorylation on the threonine residue of LxxQxTG motifs (Zeng and Cai, 1999). The phosphorylation site of µ2 has been mapped to threonine 156 (Pauloin and Thurieau, 1993; Olusanya et al., 2001), and it shares a similar motif [IxxQxTG] with isoleucine being substituted for leucine in the first position. The AAK1, that copurifies with AP2, has been shown recently to phosphorylate µ2 at this same site (Ricotta et al., 2002), and thus it is likely that µ2 is targeted for AAK1 phosphorylation through its IxxQxTG motif.
An important next step will be to test the in vivo consequences of perturbing AAK1 function on endocytosis. Since AAK1 is localized to the leading edge of migrating cells, a region active in actin turnover and remodeling, and is related to Ark1p and Prk1p, proteins shown to be involved in regulating actin organization in yeast (Cope et al., 1999) and endocytosis (Zeng and Cai, 1999), there is a strong possibility that AAK1 may also function to coordinate cytoskeletal actin dynamics and endocytosis. Additionally, it will be important to identify AAK1-interacting partners that potentially modulate its activity. The identification of AAK1 partners and potentially other phosphorylation substrates and the identification of the endogenous phosphatase found in AP preparations will help to understand how the cycle of phosphorylation/dephosphorylation regulates clathrin-mediated endocytosis.
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Materials and methods |
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For biopanning, a GST fusion protein with the ear domain of -adaptin (amino acids 701938; a gift from L. Traub, University of Pittsburgh, Pittsburgh, PA) was immobilized on a glutathione-agarose matrix (Amersham Pharmacia Biotech). The phage display library was incubated with the immobilized
-adaptin ear in the presence of a panning buffer (0.5% BSA, 25 µg/ml sheared salmon sperm DNA, 0.5% NP-40, 25 µg/ml heparin, 0.05% sodium azide, all in PBS, pH 7.4) for 1 h at room temperature. The
-adaptin ear immobilized ligand with bound phage was then washed with 10 column vol of PBS, pH 7.4. Bound phage were then amplified by inoculating BLT5403 bacterial cells (OD600 = 0.75), and incubating with constant shaking at 37°C until cell lysis was observed (
2.5 h). Bacterial debris was removed by centrifugation, and the supernatant was used for further rounds of biopanning with new immobilized
-adaptin ear ligand. After three rounds of biopanning and phage amplification to enrich for specific protein interactions, phage were plated on BLT5403 cell lawns, plaques were isolated, and cDNA inserts were amplified by PCR using the T7Select UP (5'-GGAGCTGTCGTATTCCAGTC-3') and DN (5'-AACCCCTCAAGACCCGTTTAG-3') primers and used for DNA sequencing.
Preparation of cDNA constructs
The COOH-terminal domain of AAK1 (amino acids 679893) was obtained from isolated phage by PCR using the T7Select UP and DN primers (see above). The PCR product was cloned into pCR2.1 using the Topo cloning kit (Invitrogen). The COOH-terminal cDNA fragment was then excised by an EcoRI and XhoI digest for subcloning into pGEX4T-3 (Amersham Pharmacia Biotech) for the generation of a GST fusion protein. Human full-length AAK1 (clone KIAA1048; GenBank/EMBL/DDBJ under accession no. BC002695) cDNA constructs in pBluescript were provided by the Kazusa Research Institute (Kisarazu, Chiba, Japan). This full-length cDNA insert was subcloned into pVL1393 (PharMingen) for baculovirus expression by PCR using primers 5'-TCTAGACATATGCAGCCAAAGGCCAGACTG-3' and 5'-GAATTCTTGGGTTTTGGGGGATGAGG-3' to introduce XbaI and EcoRI cloning sites, respectively. A COOH-terminal GST tag was introduced into the pVL1393 AAK1 construct by subcloning GST from pGEX4T-3 (Amersham Pharmacia Biotech) by PCR with 5'-GGAATTCCTGGTTCCGCGTGGGTCCATGTCCCCTATACTAGGTTATTG-3' and 5'-GCGGCCGCTTACAGATCCGATTTTGGAGGATGG-3' primers containing EcoRI and NotI restriction sites, respectively, into the appropriate pVL1393 restriction sites.
Fusion protein expression and isolation
The pGEX4T-3 GST fusion construct containing the COOH-terminal domain of AAK1 (amino acids 679893) was transformed into BL21(DE3) cells. Expression of the fusion protein was induced by the addition of 0.1 mM IPTG for 3 h at 25°C. Bacterial cells were lysed by nitrogen cavitation, cellular debris was removed by centrifugation, and the soluble fraction containing the expressed fusion protein was isolated using glutathione-agarose beads. Bound protein was eluted from beads using 20 mM reduced glutathione in TBST (50 mM Tris, pH 7.5, 0.9% NaCl, 0.05% Tween-20, and 0.5% BSA) and used for in vitro binding experiments or as an immunogen for antibody production (see below). The full-length AAK1GST fusion construct in pVL1393 was used for protein expression using the BaculoGold Expression System following manufacturer protocols (PharMingen). After infection with generated baculovirus and expression in TN5 cells, cells were pelleted, processed, and fusion protein was isolated following identical procedures as those followed for bacterially expressed GST fusion proteins above.
In vitro protein interaction tests
Affinity matrices made with GST fusion proteins immobilized on glutathione-agarose beads were incubated for 1 h at room temperature with isolated protein or bovine brain cytosol in TBST. Matrices were then washed with 10 column vol of TBST, and bound protein was analyzed by SDS-PAGE.
Antibodies
Polyclonal antibodies against µ1 and µ2 were gifts from M. Robinson (University of Cambridge, Cambridge, UK). The monoclonal antibodies, AP.6 (Chin et al., 1989), against -adaptin, and the monoclonal antibodies, TD.1 (Nathke et al., 1992) and X22 (Brodsky, 1985), against clathrin were gifts from F. Brodsky (University of California, San Francisco, CA). The monoclonal antibody against ß-adaptin, 100-1 (Ahle et al., 1988), was a gift from E. Ungewickell (Hanover Medical School, Hanover, Germany). The monoclonal (Warnock et al., 1995), against dynamin, hudy1, and the polyclonal antibody against AP2, 0927 (Hannan et al., 1998), were generated in this lab.
To generate antibodies to AAK1 (designated #5366 and #5367), the isolated COOH-terminal domain (amino acids 679893) fused to GST within a pGEX4T-3 vector was purified from Escherichia coli and used as an immunogen. The immunogen was resuspended in Freund's adjuvant, injected subcutaneously into New Zealand white rabbits every 4 wk for 3 mo, and sera was collected from the central ear artery according to described protocols (Harlow and Lane, 1988).
Electrophoresis and immunoblot analysis
Cell fractions were subjected to SDS-PAGE and immunoblot analysis as described (Towbin et al., 1979). Cell fractions were pelleted, resuspended in SDS-PAGE sample buffer, and denatured for 2 min at 100°C. The proteins were resolved on an acrylamide gel and transferred to nitrocellulose for immunolabeling as described (Towbin et al., 1979) or stained with Ponceau S (Sigma-Aldrich). For immunoblots, blots were washed twice for a total of 30 min in TBST and then incubated for 30 min in TBST containing diluted antibody (1:2,000). The blots were then washed three times in TBST over 30 min and incubated in TBST with goat antirabbit antibodies conjugated to alkaline phosphatase (Sigma-Aldrich) diluted 1:10,000. Blots were washed in TBST three more times over 30 min. Immunolabel signals were detected by BCIP/NBT colorimetric development as described (Harlow and Lane, 1988). Controls used in this experiment included blots incubated with preimmune antisera and secondary antibody alone. Each of these immunoblots showed no signal (unpublished data).
Bovine brain fractionation
Bovine brains were harvested immediately after slaughter, frozen on dry ice, and stored at -70°C for later use. Frozen brains were defrosted rapidly using room temperature MES buffer (100 mM MES, pH 6.5, 0.5 mM MgCl2, 1 mM EGTA, 1 mM PMSF, 0.8 mM DTT, 0.02% NaN3). Brain tissue (700 g) was rinsed in MES buffer and homogenized with an equal volume of buffer in a Waring Blender. The homogenate (Cr) was centrifuged at 15,000 g for 30 min at 4°C. This low speed pellet (P1) and supernatant (S1) were collected, and the supernatant was then centrifuged at 100,000 g for 1 h at 4°C in a Ti45 rotor (Beckman Coulter). The crude microsomal pellet (P2) containing CCVs was resuspended in extraction buffer (0.75 M Tris, pH 7.0, 0.1 mM PMSF, 0.1 mM DTT) using a dounce homogenizer and allowed to incubate for 20 min at 4°C. The sample was then centrifuged at 100,000 g for 1 h at 4°C in a Ti45 rotor and the supernatant (ES, containing released clathrin and APs) and pellet (EP) were collected. Collected samples were then analyzed by SDS-PAGE and immunoblotting. Clathrin-coated vesicles and AP complexes were isolated as described previously (Hannan et al., 1998; Smythe et al., 1992).
Kinase assays
Kinase assays were performed essentially as described (Wilde and Brodsky, 1996) with minor modification. Briefly, isolated baculovirus expressed AAK1GST and cell fractions were inoculated in kinase buffer (150 mM KCl, 5 mM MgCl2, 100 µM [-32P]ATP) for 15 min at room temperature. The kinase reaction was stopped by precipitating the protein with the addition of TCA to a final concentration of 10%. Precipitated proteins were pelleted by centrifugation, the supernatant containing free [
-32P]ATP was aspirated, and the pellet was resuspended in 0.1 M NaOH and SDS-PAGE protein sample buffer and boiled for 2 min at 100°C. Proteins were resolved on a 1020% gradient polyacrylamide gel (Bio-Rad Laboratories), transferred to nitrocellulose, exposed to a phosphorimaging plate, and analyzed using the ImageQuant Software package (Molecular Dynamics). To inactivate AAK1GST fusion proteins, isolated protein was treated with 1 mM FSBA (Sigma-Aldrich) for 30 min at room temperature. Unbound FSBA was removed from protein preparations by gel filtration using G25 minispin column (Amersham Pharmacia Biotech), and eluted protein was used in both kinase and in vitro endocytosis assays.
Immunoprecipitation of phosphorylated proteins
After the kinase assay, the phosphorylation reaction was stopped by the addition of 20% SDS in H20 to a final concentration of 1% and boiled for 2 min at 100°C. The reaction was then resuspended in RIPA buffer (150 mM NaCl, 1% NP-40, 0.5% deoxycholate, 0.1% SDS, 50 mM Tris, pH 8.0) and proteins preabsorbed with protein G beads (Amersham Pharmacia Biotech) for 1 h at room temperature. Beads were pelleted, and samples were transferred to a new Eppendorf tube containing diluted antibodies (1:1000) specific for either µ1, µ2, -adaptin, or ß2-adaptin and incubated with constant rocking for 1 h at room temperature. Protein G beads were then added to each sample and incubated for 1 h at room temperature, beads were pelleted, washed with 10 bead vol of RIPA buffer, and pelleted protein G beads were resuspended in SDS-PAGE sample buffer, boiled for 2 min at 100°C and resolved by SDS-PAGE, transferred to nitrocellulose, and placed on a phosphoimaging plate for analysis.
Immunolocalizations and rhodamine-dextran uptake
For Immunofluorescence experiments, HeLa cells were grown on coverslips and then fixed with ice cold 4% formaldehyde for 25 min. Cells were washed three times with TBST and then incubated with the designated antibodies for 1 h at room temperature. Samples were washed three times with TBST, and the appropriate secondary antibodies were added at 1:5,000 dilution and incubated for 1 h at room temperature. For rhodamine-dextran uptake experiments, rat hippocampal neurons were incubated for 10 min at 37°C in the presence of 100 µM rhodamine-dextran (Molecular Probes), cells were washed three times with TBS to remove excess rhodamine-dextran, and then fixed and processed as described above. Samples were visualized by laser scanning confocal microscopy with a Bio-Rad Laboratories 1024.
Assays for ligand sequestration and internalization
Perforated cell assays that measure biochemically distinct stage-specific endocytic events in vitro were performed essentially as described (Carter et al., 1993) except that reaction mixtures were incubated for a shorter time of 7 min at 37°C and then processed as described.
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Footnotes |
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Acknowledgments |
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S.L. Schmid and S.D. Conner were supported by National Institutes of Health grants R37-MH61345 and GM20632-01, respectively. This is The Scripps Research Institute manuscript number 14394-CB.
Submitted: 23 August 2001
Revised: 19 November 2001
Accepted: 27 December 2001
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References |
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