Nitric Oxide Binding Properties of Neuroglobin

A CHARACTERIZATION BY EPR AND FLASH PHOTOLYSIS*,

Sabine Van DoorslaerDagger , Sylvia Dewilde§, Laurent Kiger||, Sergiu V. NistorDagger **, Etienne GoovaertsDagger , Michael C. Marden||, and Luc MoensDaggerDagger

From the Departments of Dagger  Physics and  Biomedical Sciences, University of Antwerp, B-2610 Antwerp, Belgium, || INSERM, Unite 473, Hôpital de Bicètre, F94275 Le Kremlin- Bicètre, France, and the ** National Institute for Materials Physics, POB MG-7 Magurele-Bucuresti, Romania

Received for publication, October 17, 2002, and in revised form, November 27, 2002

    ABSTRACT
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Neuroglobin is a recently discovered member of the globin superfamily. Combined electron paramagnetic resonance and optical measurements show that, in Escherichia coli cell cultures with low O2 concentration overexpressing wild-type mouse recombinant neuroglobin, the heme protein is mainly in a hexacoordinated deoxy ferrous form (F8His-Fe2+-E7His), whereby for a small fraction of the protein the endogenous protein ligand is replaced by NO. Analogous studies for mutated neuroglobin (mutation of E7-His to Leu, Val, or Gln) reveal the predominant presence of the nitrosyl ferrous form. After sonication of the cells wild-type neuroglobin oxidizes rapidly to the hexacoordinated ferric form, whereas NO ligation initially protects the mutants from oxidation. Flash photolysis studies of wild-type neuroglobin and its E7 mutants show high recombination rates (kon) and low dissociation rates (koff) for NO, indicating a high intrinsic affinity for this ligand similar to that of other hemoglobins. Since the rate-limiting step in ligand combination with the deoxy-hexacoordinated wild-type form involves the dissociation of the protein ligand, NO binding is slower than for the related mutants. Structural and kinetic characteristics of neuroglobin and its mutants are analyzed. NO production in rapidly growing E. coli cell cultures is discussed.

    INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Two new globins, neuroglobin (Ngb)1 and cytoglobin (Cygb), were recently added to the vertebrate globin family. Ngb is predominantly expressed in the brain and in other nerve tissues whereas Cygb is expressed in all tissues studied so far. Human Ngb and Cygb are composed of 151 and 190 amino acids, respectively, the Cygb being ~40 residues longer than standard globins because of the presence of amino- and carboxyl-terminal extensions of ~20 residues each. Although both globins display the structural determinants of the globin fold (1), they share little sequence identity with vertebrate hemoglobin (Hb) and myoglobin (Mb) (2-7). In contrast with Mb, which is expressed in muscle tissue in the millimolar range, Ngb and Cygb are expressed at a much lower level (micromolar range) (2, 3).

Ngb and Cygb are hexacoordinated (hx), either in their ferrous or ferric forms, having the distal HisE7 as the internal ligand (3, 8, 9, 10). Flash photolysis studies of Ngb, at normal temperature, show high recombination (kon) and low dissociation (koff) rates for O2 and CO, suggesting a high intrinsic affinity for both ligands. However, since the rate-limiting step in ligand binding to the ferrous deoxy-hx form involves dissociation of the distal HisE7 residue, ligand binding in vivo is suggested to be low (P50 = 1 Torr) (6-9). The study of the ligand binding over a wide range of temperature reveals the presence of multiple, intrinsically heterogeneous distal heme pocket conformations in Ngb-CO (11). Distal heme pocket heterogeneity is also observed by Raman spectroscopy (8).

Cytosolic hxHbs are also observed in bacteria (12), unicellular eukaryotes (13), plants (14), and some invertebrates (15). It can be extrapolated that hxHbs are universally spread over the living world and thus may have essential function(s) in cell metabolism.

The physiological role of low expressed hxHb is not well understood. Several functions have been suggested. First, these might be proteins involved in O2 scavenging under hypoxic conditions and supplying it for aerobic respiration (2, 6, 9). Second, they might function as terminal oxidases by reducing NADH under micro-aerobic conditions and enhancing as such the ATP production by glycolysis (16). Third, they could be O2 sensor proteins activating other proteins with regulatory function (11, 12). Fourth, they may display as yet unknown enzymatic activities. Fifth, these might be involved in NO metabolism as shown for Mb (17-18), some flavo-Hbs (19) and truncated Hb (20), and the Ascaris (Nematoda) Hb (21).

Electron paramagnetic resonance (EPR) has been used for more than thirty years to analyze nitrosyl (NO) ligation to the heme group of different hemeproteins (22-31). The NO radical bound to the central Fe2+ ion in a hemeprotein forms a paramagnetic, low-spin (S = 1/2) complex, which can be detected by EPR. Furthermore, EPR techniques have been extensively used to study the oxidized ferric state of different heme proteins (32-35).

Here we present an extensive EPR analysis of recombinant wild-type (wt) and mutant mouse Ngb (mNgb) in its ferric and nitrosyl ferrous form in comparison with those of recombinant sperm whale (sw) wt and mutant Mbs. Furthermore, we give a detailed kinetic analysis of the NO binding to wt mNgb and mutants.

    EXPERIMENTAL PROCEDURES
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ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Expression Cloning and Purification of Recombinant Wild Type and Mutant Mouse Ngb-- Expression cloning and purification of wt and mutant mouse Ngb was performed as described previously (9). Briefly, the expression plasmids (cDNA of mNgb in pET3a) were transformed in Escherichia coli, strain BL21(DE3)pLysS, and grown at 25 °C in the presence of ampicilin, chloramphenicol, and delta -amino-levulinic acid. After induction, the cells were grown overnight. The cells were broken by freeze-thawing and sonication (9). The Ngb was purified from the clarified cell lysate by ammonium sulfate precipitation, DEAE-Sepharose ion exchange, and size exclusion chromatography.

Substitution of the distal His (E7) by Leu, Val, or Gln, was performed on the recombinant Ngb using the QuickChangeTM site-directed mutagenesis method (Strategene). The recombinant mutant Ngb was subsequently expressed and purified as wt Ngb.

Derivatization of Ngb-- Purified ferric Ngb was converted to the ferrous form by addition of sodium dithionite. Excess reagent was eliminated by size exclusion chromatography (Amersham Biosciences PD10 column) under CO atmosphere (AtmosBagTM, Aldrich) and using CO-saturated buffer (50 mM Tris-HCl, pH 7.5). Replacement of CO by NO was performed by incubating the ferrous Ngb-CO with 1 mM spermine nonoate (N-[4-(1[3-aminopropyl]-2-hydroxy-2-nitrosohydrazino)butyl]-1,3-propanediamine) at room temperature for 60 min (36). Mb and Mb mutants were expressed and purified as described previously (37).

Analytical Techniques-- Dissolved O2 was measured with a Hanna HI 9141 oxygen meter (HANNA Instruments).

NO<UP><SUB>3</SUB><SUP>−</SUP></UP> and NO<UP><SUB>2</SUB><SUP>−</SUP></UP> were analyzed using a Dionex DX-120 ion chromatograph equipped with an AS14 anion column (Dionex Benelux) (www.dionex.com).

Optical Spectra-- Spectral measurements were made with an SLM DW2000 spectrophotometer (Hewlett Packard). Under air, the samples (10 µM on a heme basis in 4 × 10-mm quartz cuvettes) oxidize within an hour; this form was taken to be the ferric state. The spectra of the Ngb directly within the E. coli cell culture were measured with the DW2a spectrophotometer (Aminco) in the split beam mode, ranging from 350 to 650 nm.

Electron Paramagnetic Resonance-- The EPR spectra were recorded on a Bruker ESP300E spectrometer (microwave frequency 9.43 GHz) equipped with a gas-flow cryogenic system, allowing operation from room temperature down to 2.5 K. All presented spectra were recorded with a microwave power of 10 milliwatts, a modulation frequency of 100 kHz, and a modulation amplitude of 0.5 milliTesla. The magnetic field was calibrated using a sample of DPPH (diphenylpicrylhydrazyl) and an NMR Gaussmeter (Bruker ER 035 M).

The EPR spectra were simulated using the EasySpin program (www.esr.ethz.ch/). The intensities of the spectra were determined by double-integration of the spectra after baseline correction. In relating the spectral intensities to relative spin concentrations the total protein concentration and volume were taken into account. Samples for the EPR measurements were taken at different stages in the isolation and purification process of the proteins.

Spectra and Ligand Binding Kinetics-- For all the kinetic measurements the experimental conditions were 100 mM potassium phosphate, pH 7.0. The typical sample concentration was 10 µM on a heme basis, and the measurements were performed in a 4 × 10-mm quartz cuvette at 298 K.

NO Binding Kinetics-- NO bimolecular recombination rates (k<UP><SUB>on</SUB><SUP>NO</SUP></UP>) were measured after flash photolysis with 10-ns YAG laser pulses of 160 mJ at 532 nm (Quantel). The standard detection wavelength was 436 nm. Samples initially saturated with NO provide little bimolecular signal since NO rebinding occurs essentially by geminate recombination; by contrast for CO the bimolecular phase is generally the predominant pathway. We therefore first prepared a concentrated stock solution equilibrated under 0.01 atm of CO; the oxidized fraction was reduced by adding a slight excess of sodium dithionite (the final dithionite concentration was kept below 0.5 mM). Then the samples were diluted at least 50 times in the optical cuvette sealed with a rubber cap containing the phosphate buffer equilibrated under 0.009 atm of NO. The sample was introduced with a Hamilton syringe previously flushed in nitrogen. During all the experimental procedure great care was taken to work with NO without any oxygen contamination to avoid nitric oxide formation. Immediately after mixing Ngb-CO with the NO buffer, the sample was flashed by the laser pulse, and the NO rebinding was monitored. Indeed the NO bimolecular rate is faster than that of CO, allowing a measure of the NO association rate.

NO Dissociation Kinetics-- Spectral measurements were made with a HP8453 diode array spectrophotometer. Optical changes were monitored in the Soret and visible regions.

The concentrated sample was first equilibrated under pure nitrogen to remove the oxygen. Then the sample was equilibrated with 0.009 atm of NO before the reduction of the oxidized fraction with a slight excess of sodium dithionite. Once the heme is bound to NO the samples were kept on ice. The Ngb-NO samples were diluted into the optical cuvette containing the buffered solution in the presence of 1 mM sodium dithionite equilibrated under 1 atm of CO. The dithionite was added because it readily consumes the NO after its dissociation, in order to facilitate its replacement by the large excess of CO. As expected the dissociation kinetics were extremely slow, and the experimental error was, ±30%. To correct for baseline drifts, full spectra were measured, and analysis was performed on the spectral differences.

    RESULTS
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ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

NO Binding to Ngb-- Fig. 1A shows the EPR spectra of E. coli cell cultures overexpressing recombinant wt Ngb and recombinant mutant Ngb (E7-Val, E7-Gln, and E7-Leu). The E. coli cell cultures were induced at OD 0.8 and all grown under identical conditions. The spectra were recorded directly after freezing the same amounts of the living cell cultures. The spectra are dominated by an orthorhombic EPR signal, which is typical for a six-coordinated Fe2+·heme(NO) complex (22-30). Repeated experiments revealed that for the same quantity of cells, the EPR intensity was found to be a factor 4-6 higher for the cell cultures overexpressing mutant Ngb than for those overexpressing wt Ngb (see Fig. 1A). The EPR spectra showed no clear signals corresponding to ferric globins.


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Fig. 1.   X-band EPR spectra of samples of E. coli cell cultures overexpressing recombinant wild-type and mutant mouse neuroglobin taken before (A) and after (B) sonication. E. coli cell cultures overexpressing recombinant wt Ngb (a, e), recombinant E7-Val Ngb (b, f), recombinant E7-Gln (c, g), and recombinant E7-Leu (d, h). All spectra were measured at 13 K and with the same receiver gain. The spectra 1e-h are scaled in accordance with the amount of sample available for each measurement. The spin state of FeIII is indicated by: *, low spin; ***, high spin; **, non-heme.

During expression, the available O2 is completely consumed by the exponentially growing cells creating a micro-anaerobic environment (Table I). This explains the lack of Fe3+ globins in the EPR spectra. Nitrate consumption and nitrite production is obvious. Formation of volatile N-derivatives, including NO, is likely.

                              
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Table I
O2, NO2-, and NO3- concentration during neuroglobin expression in E. coli
Each value is the mean value of two independent determinations.

The optical spectrum recorded directly in the living E. coli cell cultures overexpressing recombinant wt Ngb showed the typical features (alpha  band: 560 nm, beta  band: 530 nm, Soret band: 426 nm) of a hx globin (His-Fe2+-His) (9). When the cells are overexpressing the mutant Ngb proteins, the spectra become typical for hexacoordinated NO-heme proteins (alpha  band: 571 nm, beta  band: 541 nm, Soret band: 417 nm) (38) (see Supplemental Data, Fig. S1). This assignment is corroborated by the comparison with the absorption spectra of purified ferrous Ngb in the hx deoxyform and bound to the external ligand NO (see Supplemental Data, Fig. S2). The combination of the optical and EPR data demonstrates that within the E. coli cell, recombinant wt Ngb occurs predominantly in its deoxy ferrous hexacoordinated form, whereby a small fraction of the hexacoordinated nitrosyl ferrous form is found. All recombinant mutant Ngbs under study are predominantly in the hx nitrosyl ferrous heme form.

Fig. 1B shows the EPR spectra of a batch of E. coli cells overexpressed with Ngb or its mutants after three freeze-thaw steps and sonication. Note that Fig. 1, A and B show different samples taken from a large batch of cells before and after sonication (see "Experimental Procedures"). The absolute spectral intensities of Fig. 1, A versus B should therefore not be compared; only the relative intensities of the spectra within one figure are relevant. In the case of the recombinant mutant Ngbs (Fig. 1B, f-h), the EPR spectra are virtually identical to those of the corresponding cell cultures (Fig. 1A, b-d). No significant contribution of ferric forms can be found. However, sonication of the cells overexpressing wt Ngb results in strong EPR contributions of Fe3+ complexes besides the spectrum of the NO-heme form (Fig. 1e). As shown earlier (9), one of the Fe3+ forms (indicated with an asterisk in Fig. 1e) can be ascribed to the hexacoordinated ferric state of Ngb (His-Fe3+-His). Again, the contribution of the hx His-Fe2+-NO form is found to be a factor 4-6 larger in the case of the mutants than of the wt. These results demonstrate that NO addition initially protects the Fe2+ center against oxidation. The hexacoordinated His-Fe2+-His form is however less stable against oxidation.

Fig. 2A shows the EPR spectra of wt, E7-Val, E7-Gln, and E7-Leu Ngb proteins at pH 8.5 after purification of the proteins. In all spectra, different signals due to Fe3+ complexes (both low- and high-spin) can be discerned. They result from the long O2 exposure during purification and will be discussed in detail in the next section. In all spectra, the contribution of the NO adduct of the Ngb proteins can still be seen, but likely represents a small percentage of the total heme.


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Fig. 2.   X-band EPR spectra of the purified ferric forms of recombinant wild-type and mutant mouse neuroglobin (A) and recombinant wild-type and mutant sperm whale myoglobin (B). a, wt Ngb at pH 8.5 (Tris buffer); b, E7-Val Ngb at pH 8.5 (Tris buffer); c, E7-Gln Ngb at pH 8.5 (Tris buffer); d, E7-Leu Ngb at pH 8.5 (Tris buffer); e, wt swMb; f, E7-Val swMb; g, E7-Gln swMb; h, E7-Leu swMb. All spectra were measured at 13 K. All spectra are normalized to the same height.

In order to prove that the EPR spectra observed in Fig. 1A can indeed be ascribed to a nitroxide adduct of the Ngb proteins, the carboxyl ferrous forms of the proteins were reacted with the nitrosating reagent, spermine nonoate. The corresponding EPR spectra for wt and E7-Leu Ngb are depicted in Fig. 3A, a and b. As a comparison, the spectrum for the recombinant E7-Leu mutant of swMb, treated in the same way, is shown (Fig. 3Ac). Apart from EPR signals due to Fe3+ complexes, which were also present in the control measurements of the carboxyl ferrous proteins and which can be ascribed to an incomplete reduction of the Fe3+ proteins with sodium dithionite, clear signals similar to the ones observed in the E. coli cell cultures are observed. Both at pH 7.5 and 8.5, the Fe2+-NO concentration in E7-Leu Ngb was larger than the one in wt Ngb (the relative concentration was determined on the basis of the protein concentration, volume, and EPR signal intensity). The release of NO by spermine nonoate is controlled by the pH, whereby a higher release occurs at lower pH. The difference in the EPR intensities confirms the earlier observed differences (Fig. 1A) between the EPR spectra of E. coli cells overexpressing wt Ngb and its mutants.


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Fig. 3.   X-band EPR spectra of the ferrous carboxyl forms of recombinant mouse neuroglobin and sperm whale myoglobin after treatment with spermine NONOate at pH 7.5 (A). a, recombinant wt Ngb; b, recombinant E7-Leu Ngb; c, recombinant E7-Leu swMb. Detailed analysis of the EPR spectra of the Fe2+ heme(NO) complexes (B). e, recombinant E7-Val Ngb; f, recombinant E7-Leu swMb. Experiment, full line; simulation, dashed lines. All spectra were measured at 13 K.

Fig. 3B shows the NO-related signal in detail for E7-Val Ngb and E7-Leu Mb with the corresponding simulations. The simulations were done assuming an admixture of two species of rhombic (type I) and axial (type II) symmetry. The EPR parameters for type I are given in Table II, the axial g tensor of type II was for all cases taken as gperp  approx  2.035, g|| approx  1.98. The parameters are typical for a six-coordinated Fe2+(heme)NO structure (22-31). The EPR spectra of the Ngb proteins could be simulated using a ratio of type I over type II (nI/nII) equal to 80/20%, whereby this ratio was 95/5% for E7-Leu Mb. Variations in the nI/nII ratio have been reported earlier for different heme proteins (22, 26-30). Isolated NO-ligated alpha (beta )-chains of Hb give nI/nII ratios of 80/20 (10/90) at temperatures below 30 K (26, 28). For Mb at low temperature, nI/nII ratios varying from 50/50% (28) to 70/30% (27) have been observed, depending on the type of Mb. For all hemeproteins, type II is found to dominate at high temperatures (>180 K). Furthermore, subtle variations of the g tensors of type I were detected upon temperature increase (27, 30).

                              
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Table II
EPR parameters for the hexacoordinated nitrosyl ferroheme complexes (Type I)
The g values and the principal hyperfine values of the 14N in NO are given. In all simulations, the hyperfine values of the 14N of the proximal histidine were taken to be: A1' = 15 (±5) MHz, A2' = 20 (±5) MHz, A3' = 30 (±5) MHz. The given errors apply for the EPR parameters determined in this work.

On the basis of extensive EPR and ENDOR studies, type I has been assigned to a hexacoordinated structure with the nitroso-ligand coordinated in a bent end-on orientation with the proximal histidine F8 as second axial ligand (23, 26, 28, 39). In this configuration the Fe-N(NO) bond does not coincide with the porphyrin plane normal (39). Density functional computations suggest that the NO is oriented toward a meso-C atom of the porphyrin ring (40). The nature of type II is still controversial, despite the large amount of spectral data available. Several authors have ascribed type II at low temperatures to a species where the Fe-N(NO) bond aligns with the normal of the porphyrin ligand (28, 26, 29, 39), although a topological isomer with the Fe atom displaced "below" the porphyrin ligand toward HisF8 has also been proposed (22). Recent density functional computations indicate that the observed axial g tensor agrees either with a bent end-on orientation of NO where the NO ligand eclipses one of the equatorial Fe-Nporph bonds or with a partially dissociated hexacoordinated complex (distance (Fe-N(Im) >0.25 nm) with a freely rotating NO ligand (40). The latter may explain the changes in the g tensor upon increase of the temperature, but at low temperatures (<40 K), rotation of the NO ligand can be excluded. The computations excluded the "Fe-displacement" model.

NO Affinity and Kinetics-- As for other heme proteins, NO binds with a high affinity to Ngb. Flash photolysis of the NO-bound form gave small signals on the µs timescale. We therefore injected Ngb-CO into an optical cuvette prepared under a partial NO atmosphere; these samples were immediately photodissociated to allow observation of the NO binding. As for other Hbs, the bimolecular association rate is high (Table III), approaching that for a diffusion-limited reaction.

                              
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Table III
Rates of NO binding to Ngb and sperm whale myoglobin
The on- and off- rates were measured at 25°C. For Ngb the NO affinity depends on the competition between NO and His for the heme: KNO = KNOpenta/(1 + KHis) where KNOpenta refers to the pentacoordinated form and KHis is determined in Ref. 9.

The replacement of NO by CO allowed a measurement of the NO dissociation rate, which was quite low. Both the on- and off-rates of NO to pentacoordinated Ngb were similar for the series of mutants; thus the affinity for the pentacoordinated form Kpenta are similar. The main difference is therefore the competitive binding of the distal histidine for the wt Ngb. As for other external ligands, this will decrease the observed affinity by nearly a factor of 1000, as determined by the relation for competing ligands : K Kpenta/(1+ KHis). This large reduction in affinity can also be explained as if there were two types of association by the external ligand: when the site is free (pentacoordinated form), there is a high rate of binding, whereas if the external ligand encounters the hexacoordinated form, it must wait for the histidine to dissociate, and the overall ligand replacement will occur on a much slower timescale.

Analysis of the EPR Data of the Ferric Heme Proteins-- The ferric form of the wt Ngb has been characterized earlier by EPR (10). The study revealed the simultaneous presence, in a wide range of pH values, of two related structural forms. The dominant low-spin form (>90%) (LS1 (Table IV), indicated in Fig. 1e with an asterisk) could be attributed to a His-Fe3+-His configuration. The high-spin form (HS1 (Table IV), indicated with a double asterisk in Fig. 1e) could be ascribed either to a hexacoordinated His-Fe3+-H2O form or to a pentacoordinated His-Fe3+. The EPR spectra strongly suggested that an equilibrium exists between a low-spin species in which the E7 His residue is in a distal imide coordination at the iron atom, in a slightly tilted His-Fe3+-His structure and a high-spin species, favored at low pH, in which the E7 His residue swings out from the heme pocket possibly allowing a water molecule to bind in the distal position. The equilibrium lies strongly on the side of the low-spin species. Ferrous Ngb was earlier found to remain hexacoordinated over a wide range of pH values (9). The fact that the distal histidine of Ngb can bind to the heme iron in both ferric and ferrous states is consistent with the distal histidine residing closer to the heme than seen in mammalian Hbs and Mbs, but similar to other non-mammalian Hbs and cytochromes. Indeed, comparison with the EPR spectrum of wt swMb (Fig. 2e) shows us that Mb is predominantly in the aquomet form (HS5, Table IV) with a small contribution of a low-spin Fe3+ species (LS4, Table IV), which can be attributed to a His-Fe3+-OH- form that is only present at high pH (33) (see also Supplemental Data).

                              
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Table IV
The g values of ferric low-spin (LS) and high-spin (HS) species observed in frozen solutions of recombinant wild-type and mutant neuroglobin and recombinant wild-type and mutant sperm whale myoglobin
For the neuroglobin mutants only the data for the buffer-independent signals are given. The EPR data are obtained through simulation (see Supplemental Data, Fig. S5).

The signals marked by a triple asterisk in Fig. 1e, which can also be observed in the EPR spectra in Fig. 2A can be attributed to non-heme ferric residues (42) and will not be discussed further.

The EPR spectra of the ferric Ngb E7-mutants are markedly different from those of ferric wt Ngb (Fig. 2B). As expected the low-spin complex LS1 is not found in the mutants, confirming that this low-spin complex can indeed be ascribed to an hx His-Fe3+-His structure. Besides the contribution of the ferrous nitrosyl heme form, EPR signals due to different high-spin (HS) and low-spin (LS) ferric complexes can be observed in the spectra of the Ngb mutants (Fig. 2A, b-d). This contrasts clearly with the EPR spectra of the corresponding mutants in swMb (Fig. 2, f-h). These spectra consist of only the high-spin form. For E7-Gln Mb, HS8 can be attributed to the aquomet form, whereby HS6 and HS7 of E7-Leu and E7-Val Mb can be related to a five-coordinate heme iron (33) (Table IV and Supplemental Data, Fig. S3). Ikeda-Saito et al. (33) showed that large spectral changes can occur in the EPR spectra of E7-Leu, E7-Val, and E7-Gln Mb upon change of the buffer. Analogous effects were observed for the Ngb mutants under study (see Supplemental Data). No buffer effect was detected for wt Ngb (Supplemental Data, Fig. S4A) or for wt Mb (33). Although we have no plausible explanation for the buffer effect, it seems that the histidine residue at position E7 protects the heme pocket from influences of the buffer molecules. In Table IV only those ferric complexes of the Ngb mutants are mentioned that are observed regardless of the buffer system. All mutants showed EPR signals due to a high-spin FeIII complex (HS2, HS3, HS4). Since the EPR spectra were found to be pH-independent and no clear signal of His-Fe3+-OH- could be observed at high pH, these high-spin features can be attributed to a five-coordinate heme iron rather than to the aquomet form. Differences between the EPR parameters of the high-spin forms of the Ngb mutants and the corresponding swMb mutants may be related to the different position of the E7 amino acid versus the heme. Pulse EPR measurements will be undertaken to investigate this. Furthermore, a low-spin signal (LS2, Table IV) can be found in all EPR spectra of the Ngb mutants. The g values are similar to those observed for a His-Fe3+-Tyr- ligation, as was found at high pH for Chlamydomonas chloroplast Hb (43). However, the lack of a tyrosine at B10 (B10-Phe) and the fact that the spectrum of LS2 is pH independent over the pH range 5-10, excludes this possibility. Also the observation of the low-spin species LS3 in E7-Leu Ngb remains inexplicable at present. The g values are in accordance with a ligation of a sulfur-containing endogenous ligand such as mercaptide or mercaptoethanol (44). To further examine these low-spin species, pulse EPR measurements are planned in the future.

    DISCUSSION
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ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Structural and Kinetic Analysis-- The EPR data and NO binding kinetics clearly show a different behavior of the wt Ngb versus its mutants E7-Leu, E7-Val, and E7-Gln. Fig. 4 shows schematically the reaction pathways under anaerobic conditions in the presence of NO (E. coli cell cultures) and under aerobic conditions in the absence of NO. As determined by EPR and optical spectroscopy, the wt Ngb is in the rapidly growing E. coli cells predominantly in the hexacoordinated His(F8)-Fe2+-His(E7) configuration, whereas all mutants occur in the hx His(F8)-Fe2+-NO form. This observation agrees with the fact that the NO affinity is about a factor 1000 lower for the wt Ngb than for the Ngb mutants (Table III). This results from the competition between NO and the distal histidine since the intrinsic NO affinities to the pentacoordinated form are comparable for the wt and mutant Ngbs. However, the NO affinity is so high that the difference in values between wt Ngb and mutants (nM versus pM) probably does not matter. It is more likely that in hx wt Ngb the rate of NO binding is slower than in the mutants, and thus other NO consuming reactions can compete with wt Ngb for the ligand.


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Fig. 4.   Reaction schemes for recombinant wild-type (A) and mutant (B) mouse neuroglobin inside and outside the E. coli cells.

After sonciation of the cells, the autoxidation of the Ngb mutants is slow indicating that NO ligation initially protects the heme pocket against oxidation. The on-rate for NO binding to pentacoordinate E7-Leu NGB is comparable with those for CO and O2 binding (kon(O2) = 7 × 108 M-1 s-1, kon(CO) = 2 × 108 M-1 s-1), but the off-rate is considerably lower in the case of NO binding than for O2 binding (koff(O2) = 200 s-1, koff(CO) not determined) (9), which explains the observed protection against oxidation by NO. This protection is not given by the distal histidine ligation, as becomes obvious from the appearance of the EPR spectra of the His(F8)-Fe3+-His(E7) form immediately after sonication of the cells (Fig. 1e). This agrees with the earlier determined high autoxidation rate of Ngb and with the fact that the NO dissociation rate constant is about a factor 6000 lower as the histidine dissociation rate constant (koff = 1.2 s-1) (9). Our earlier EPR analysis of Ngb showed that ferric Ngb is predominantly in the low-spin hexacoordinated form (Fig. 2a and Ref. 10). Besides the expected EPR signal of the high-spin pentacoordinated ferric heme complexes (HS2, HS3, HS4), unidentified signals of low-spin Fe3+ complexes could be observed in the EPR spectra of the purified Ngb mutants (Fig. 2A). Most of these signals were found to be buffer-dependent indicating that mutation of E7-His destabilizes the heme pocket.

It is interesting to note that all Ngb proteins under study show at 10-15 K the same ratio of type I versus type II ferrous nitrosyl-heme complexes (nI/nII = 80/20%) as found for NO-ligated alpha Hb. An extensive proton ENDOR analysis of the type I and type II forms in horse heart Mb at 10 K showed that for both isomers the E7-His and E11-Val residues are present in the heme pocket and stabilize the bound NO (29). Using electron spin echo envelope modulation (ESEEM) spectroscopy, an interaction with the Nepsilon nitrogen of the distal E7-His could be found for NO-ligated heme proteins of type II, where this interaction was not observed for type I (28). This seems to correlate with our observation that at 13 K E7-Leu Mb is quasi in the pure type I form (95%), whereas this is only 50-70% for wt Mb (27, 28). The substitution of the distal histidine has a significant influence on the formation of the type II nitrosyl isomer in Mb. Furthermore, the stabilization of NO by a hydrogen-bonded Nepsilon in the axial state II seems to agree with x-ray crystal structure (41). Although type I and type II species have been found in frozen solutions of NO-ligated tetraphenyl porphyrin imidazole (26), the ENDOR and ESEEM data on Hbs and Mbs seem to indicate that the variations of the NO binding geometry is in heme proteins controlled by the heme's protein surrounding. The ENDOR data on type I and type II suggest that the difference between the type I and type II form lies not only in the deviation of the Fe-N(NO) axis from the porphyrin normal, but also in a displacement of both distal and proximal histidine versus the heme plane (30, 39). Interestingly, mutation of the E7-His site in Ngb does not seem to influence the nI/nII ratio. From the observation of the hexacoordinated His-Fe-His configuration for Ngb we assume that the distal histidine resides closer to the heme in Ngb than in mammalian Hbs and Mbs. The current observations seem to indicate that in this geometry E7-His can influence less the equilibrium between the two NO binding modes than observed in Mb. This might also explain why the effect of the polarity of the E7 amino acid on the NO association rate constants is less pronounced for Ngb than for Mb (Table III).

Biological Implications-- (i) NO production in E. coli: during protein expression in E. coli under traditional laboratory conditions (250 ml of medium in a 1-liter Erlenmeyer; normal shaking), the metabolism of the cells gradually shifts from aerobic to anaerobic respiration because of the complete consumption of the initially available O2 by the increasing cell density. Under conditions of low O2, nitrate reductase is induced, and E. coli will reduce nitrate to nitrite and nitrite to NO using this enzyme. The concentrations of NO produced by E. coli in this way never exceed 300 µM despite large excesses of nitrite and formate and is self-limiting (45-48). The poisonous NO will be part of the mechanism for rapidly shutting down the TCA cycle and terminal oxidase in semi-anaerobic conditions (49). Excess NO will be detoxified by diverse systems including flavohemoglobin and flavorubredoxin (50, 51). During the expression of a hemoprotein at high concentration, NO will be scavenged by the heme-iron resulting in ferrous nitrosyl spectra. The degree of NO binding however will depend on the distal site conformation.

It is well documented that co-expression of Vitreoscilla Hb, in E. coli, will increase bacterial protein expression (52-54). This effect is mainly attributed to an increased O2 supply to the bacteria by the presence of an oxygen carrier. However, in the light of our observations, the reduction of the nitrosoactive stress by the scavenging of NO by the heme iron of the Vitreoscilla Hb and thus a prolonged aerobic metabolism might be of more importance than the increased O2 supply (54, 55).

(ii) Ngb function: the involvement of Hb and Mb in the NO metabolism became clear only recently (17, 56). As a tissue hemoprotein, Mb functions as a scavenger of bioactive NO in cardio-myocytes by the reaction of MbO2 + NO to metMb + NO<UP><SUB>3</SUB><SUP>−</SUP></UP>, thereby effectively reducing the cytosolic NO concentration. Regeneration of metMb by metMb reductase to Mb and subsequent association with O2 leads to reformation of MbO2 available for another NO degradation cycle (17, 18). We therefore can ask the question whether Ngb is playing a similar role in neuronal tissue. Based on the presented EPR and kinetic data, this seems to be less probable. Indeed, the E7-His clearly hinders NO binding, in vitro, as compared with E7 mutants and protects as such the iron atom from oxidation. Therefore it seems unlikely that Ngb is a key molecule in NO metabolism. Other possible functions of Ngb must be explored further.

    ACKNOWLEDGEMENTS

We thank M. L. Van Hauwaert (University of Antwerp) for technical assistance. R. Van Grieken and B. Meersman are kindly thanked for chemical analysis. John Olson is thanked for the critical reading of the article and his constructive contribution. T. Burmeister and T. Hankels are acknowledged for their collaboration.

    FOOTNOTES

* This work was supported in part by Fund for Scientific Research-Flanders (FWO) Grant G.0409.02 (to E. G.) and Grant QLRT-2001-01548 from the European Union.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

The on-line version of this article (available at http://www.jbc.org) contains supplementary figures and data.

§ Postdoctoral fellow from the FWO. To whom correspondence should be addressed: Dept. of Physics, University of Antwerp, Universiteitsplein 1, B-2610 Antwerp, Belgium. Tel.: 0032-3-8202461; Fax: 0032-3-8202470; E-mail: Sabine.VanDoorslaer@ua.ac.be.

Dagger Dagger Supported by Grant G.0069.98 from the FWO.

Published, JBC Papers in Press, December 11, 2002, DOI 10.1074/jbc.M210617200

    ABBREVIATIONS

The abbreviations used are: Ngb, neuroglobin; Mb, myoglobin; Hb, hemoglobin; Cygb, cytoglobin; hx, hexacoordinated; wt, wild type; sw, sperm whale; EPR, electron paramagnetic resonance; ENDOR, electron nuclear double resonance; ESEEM, electron spin echo envelope modulation; LS, low spin; HS, high spin; n.d., not determined; NO, nitric oxide.

    REFERENCES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

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