Biochemical Characterization of the Penta-EF-hand Protein Grancalcin and Identification of L-plastin as a Binding Partner*

Karsten LollikeDagger, Anders H. Johnsen§, Isabelle Durussel, Niels Borregaard, and Jos A. Cox

From the Granulocyte Research Laboratory, Department of Hematology, and § Department of Clinical Biochemistry, Rigshospitalet, 2100 Copenhagen, Denmark and  Department of Biochemistry, University of Geneva, 1211 Geneva, Switzerland

Received for publication, February 1, 2001


    ABSTRACT
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Grancalcin is a recently described Ca2+-binding protein especially abundant in human neutrophils. Grancalcin belongs to the penta-EF-hand subfamily of EF-hand proteins, which also comprises calpain, sorcin, peflin, and ALG-2. Penta-EF-hand members are typified by two novel types of EF-hands: one that binds Ca2+ although it has an unusual Ca2+ coordination loop and one that does not bind Ca2+ but is directly involved in homodimerization. We have developed a novel method for purification of native grancalcin and found that the N terminus of wild-type grancalcin is acetylated. This posttranslational modification does not affect the secondary structure or conformation of the protein. We found that both native and recombinant grancalcin always exists as a homodimer, regardless of the Ca2+ load. Flow dialysis showed that recombinant grancalcin binds two Ca2+ per subunit with positive cooperativity and moderate affinity ([Ca2+]0.5 of 25 and 83 µM in the presence and absence of octyl glycoside, respectively) and that the sites are of the Ca2+-specific type. Furthermore, we showed, by several independent methods, that grancalcin undergoes important conformational changes upon binding of Ca2+ and subsequently exposes hydrophobic amino acid residues, which direct the protein to hydrophobic surfaces. By affinity chromatography of solubilized human neutrophils on immobilized grancalcin, L-plastin, a leukocyte-specific actin-bundling protein, was found to interact with grancalcin in a negative Ca2+-dependent manner. This was substantiated by co-immunoprecipitation of grancalcin by anti-L-plastin antibodies and vice versa.


    INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Grancalcin is a recently described protein present in some cells of hematopoietic origin and especially abundant in human neutrophils (1-3). Grancalcin belongs to the calpain subfamily of EF-hand Ca2+-binding proteins, comprising calpain light and heavy chain, sorcin, grancalcin, ALG-2, peflin, and YG25-yeast (4, 5). So far, the members of this subfamily seem to have diverse functions: calpain functions as a protease and can regulate adhesion, sorcin binds to and regulates the cardiac ryanodine calcium channel, ALG-2 plays a role in apoptosis, and the function of grancalcin is unknown. From amino acid sequence comparison, it was initially deduced that these proteins possess four EF-hand motifs (6). However, recent studies on the three-dimensional structure of dVI, the Ca2+-binding domain of calpain light chain (7, 8), surprisingly revealed the presence of a fifth EF-hand N-terminal to the previously identified EF-hands. This EF-hand is of a novel type and has therefore escaped detection by sequence similarity analysis. This group of proteins is thus characterized by five EF-hands and has accordingly been named the penta-EF-hand (PEF)1 subfamily (4). In addition, the members of the PEF subfamily contain N termini of varying length and sequence but all rich in glycine and hydrophobic residues. In calpain, EF1 (although of an unusual sequence composition) and EF2 are paired and bind two Ca2+ with high affinity. EF3 and EF4 are also paired and possess one site of high affinity and one of low affinity for Ca2+. Finally, EF5, which does not bind Ca2+, is paired with a similar EF5 of another monomer and is thus a dimerization module. Native calpain is a heterodimer of the calpain light and heavy chain (9). The recent crystallization of apograncalcin (10, 11) has shown great overall similarity to the crystal structure of calpain. Grancalcin was also found to form dimers by paring of cognate EF5s. Unfortunately, grancalcin precipitated in the presence of Ca2+ and the topology of active Ca2+-binding sites could not be determined, except for binding of Ca2+ to EF3 from one monomer. Moreover, the N terminus of grancalcin is disordered in the crystals, and the first well defined residue is Ser53. In molecular sieve chromatography, purified grancalcin migrates as a homodimer (1) and ALG-2 as a monomer (12, 13). However, when using a chemical cross-linker, ALG-2 could be shown to exist also as a dimer (13).

The cDNA for grancalcin is 1.65 kilobase pairs long and contains an open reading frame for 217 amino acids; the first 14 amino acids have been reported to be removed posttranslationally to give rise to a 203-residue-long functional protein (2). This presumably functional grancalcin has a calculated molecular mass of 22.4 kDa, while grancalcin migrates as a 28-kDa protein in SDS-PAGE (1, 2). The reason for this discrepancy is unknown, but it is not due to glycosylation (1). Grancalcin translocates to membranes upon binding of Ca2+ (2, 3, 14). This is a common feature of several EF-hand proteins. Translocation is often mediated by exposure of hydrophobic patches of amino acids subsequent to Ca2+ binding, as is the case for calpain (15) and calretinin (16). In other instances, such as in the recoverin family, a covalently bound fatty acid becomes exposed after Ca2+-induced conformational changes, and this leads to translocation of the protein to membranes, a mechanism also called the myristoyl switch (17). Which of these molecular schemes prevails for grancalcin is at present unknown.

EF-hand proteins have affinities for Ca2+ varying from 108 to 103 M-1. Moreover, some show great selectivity toward Ca2+, such as calmodulin, S100 proteins, and calretinin, whereas others also bind Mg2+, such as parvalbumin and recoverin (for a review, see Ref. 18). Neither the affinity nor the selectivity can be deduced from the sequence of the EF-hands. Except for a positive 45Ca2+ overlay, no information on the ion-binding and conformational changes of grancalcin is available.

Because the biochemical characterization of grancalcin has been very sparse and nothing is known about the function of grancalcin, we decided to address these issues. In this report, we have identified a N-terminal posttranslational modification of wild-type grancalcin by mass spectroscopy and sequencing. Because grancalcin precipitates in the presence of Ca2+ in most experiments, we have generated three mutants of grancalcin with varying N-terminal deletions. We show that these mutants do not precipitate to the same degree as recombinant grancalcin. We have also compared critical properties of wild type and recombinant grancalcin, determined the binding characteristics of grancalcin for Ca2+ by flow dialysis, and probed cation induced conformational changes by fluorometry of the intrinsic Trp residues. Finally, using affinity chromatography, we identify the actin-bundling protein L-plastin as binding partner of grancalcin and document the Ca2+ dependence of this interaction.

    EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Isolation of Human Neutrophils-- Human neutrophils were isolated from volunteer donors as described (19). In short, erythrocytes were sedimented by 2% dextran (Amersham Pharmacia Biotech) in saline, and the leukocyte-rich supernatant was submitted to 400 × g density centrifugation for 30 min on Lymphoprep (Nycomed, Oslo, Norway). The pellet was submitted to hypotonic lysis of contaminating erythrocytes for 30 s in pure water, after which tonicity was restored by the addition of NaCl. The neutrophils were washed once, counted, and resuspended in saline.

SDS-PAGE and Immunoblotting-- SDS-PAGE (20) and immunoblotting (21) were performed on Bio-Rad systems according to the instructions given by the manufacturer (Bio-Rad) and as described (3), except for visualization of immunoblots, which was by metal-enhanced diaminobenzidine tetrahydrochloride (Pierce).

Protein Measurement-- Crude protein concentration was determined by the method of Bradford according to the instructions given by the manufacturer (Bio-Rad), and catalase ranging from 0.05 to 0.5 mg/ml was used as a standard. Grancalcin was quantified by enzyme-linked immunosorbent assay as previously described (3). Purified grancalcin was quantified by the ultraviolet absorption spectrum using a molar extinction coefficient epsilon 278 nm of 28,000 M-1 cm-1.

Subcellular Fractionation of Human Neutrophils-- Isolated neutrophils at 3 × 107 cells/ml were incubated in saline with 5 mM diisopropyl fluorophosphate (Sigma) for 5 min on ice and centrifuged at 200 × g for 6 min. Cell pellets were resuspended at 2 × 108 cells/ml in binding buffer (100 mM KCl, 3 mM NaCl, 10 mM PIPES (pH 7.2)) containing 0.5 mM phenylmethylsulfonyl fluoride, 200 units/ml aprotinin, and 100 µg/ml leupeptin (all three Sigma-Aldrich) and disrupted by nitrogen cavitation at 400 p.s.i. for 5 min at 4 °C as described (22). The cavitate was ultracentrifuged at 100,000 × g for 45 min, and the supernatant was kept as cytosol.

Purification of Wild-type and Recombinant Grancalcin-- Human neutrophil cytosol (prepared as above) in binding buffer plus 0.5 mM CaCl2 was purified on a self-packaged phenyl-Sepharose (Amersham Pharmacia Biotech) column at room temperature. After binding of cytosolic proteins, the column was washed thoroughly in binding buffer plus 0.5 mM CaCl2. Bound proteins were eluted in fractions of 2 ml with binding buffer plus 5 mM EGTA. Fractions containing grancalcin (as determined by SDS-PAGE) were submitted to a buffer change to 20 mM Trizma (pH 7.4) using a Centriprep column (Amicon, Beverly, MA) and passed through a Mono-Q (Amersham Pharmacia Biotech) column coupled to an FPLC instrument (Amersham Pharmacia Biotech). Bound proteins were eluted with a 0-1 M NaCl nonlinear gradient, and 0.5-ml fractions were evaluated by SDS-PAGE and immunoblotting. Recombinant grancalcin was produced and purified as previously described (3).

Cloning and Purification of Grancalcin Mutants-- N-terminal deletion mutants were cloned from the grancalcin clone using the following primers for the N terminus: Delta 42-grancalcin, 5'-CGC GGA TCC GCA TAT TCA GAC ACT TAT TCC-3'; Delta 50-grancalcin, 5'-CGC GGA TCC GCT GGT GAC TCC GTG TAT AC-3'; and Delta 53-grancalcin, 5'-CGC GGA TCC TCC GTG TAT ACT TTC AGT G-3'. For all three mutants, the following primer was used for the C terminus: 5'-CCG GAA TTC TCA AAT TGC CAT AGT GCC CTG C-3'. The obtained clones and the vector (pGEX2T (Pharmacia Amersham Biotech)) were cut with BamHI and EcoRI and, following ligation, transformed into Escherichia coli. The expressed clones were checked by sequencing (model 377 DNASequencer (PE Biosystems, Foster City, CA)), and only clones with correct sequences were used for protein expression. Procedures for expression and purification of N-terminal deletion mutants were as described for recombinant grancalcin (3).

Proteolytic Cleavages-- For the identification of the N-terminal modification in wild type grancalcin, 20 µg of both wild type and recombinant grancalcin was incubated with 0.5 µg of endoproteinase Glu-C (Roche Molecular Biochemicals) in 500 µl 50 mM NH4HCO3 (pH 7.8) including 10% acetonitrile for 20 h at room temperature. The reaction was stopped by the addition of 1 ml 1% trifluoroacetic acid. The resulting fragments were purified by HPLC on a 2.1 × 150-mm C-4 column (Vydac, Hesperia, CA) eluted with a linear gradient (1% per min) from solvent A (0.1% trifluoroacetic acid) to solvent B (0.1% trifluoroacetic acid in acetonitrile). Peak fractions were collected manually. The putative N-terminal fragment was localized by mass spectrometry, dried, and submitted to cleavage with 0.1 µg of thermolysin (Roche Molecular Biochemicals) in 100 µl of buffer (100 mM NH4HCO3, 5 mM CaCl2 (pH 7.8) including 10% actonitrile) for 3 h at 37 °C. The reaction was stopped by the addition of 400 µl of 1% trifluoroacetic acid. The resulting fragments were purified by HPLC on a 2.1 × 150-mm C-8 column (Vydac, Hesperia, CA) as described above.

Mass Spectrometry and Sequence Analysis-- The purified peptides were analyzed in a matrix-assisted laser desorption/ionization time-of-flight mass spectrometer (Biflex, Bruker-Franzen, Bremen, Germany). For analysis, 0.5 µl of the sample was mixed with 0.5 µl of matrix solution (alpha -cyano-4-hydroxycinnamic acid in acetonitrile/methanol; Hewlett Packard), and 0.5 µl of the mixture was applied to the probe and allowed to dry. The purified proteins (wild-type grancalcin and recombinant grancalcin) were diluted 4-10 times with a 20 mM octyl-beta -glucopyranoside (OG) (Roche Molecular Biochemicals) solution in formic acid/H2O/acetonitrile (1:3:2, by volume) before mixing with the matrix. Most samples were analyzed in the positive mode. Spectra were recorded for 20-100 laser shots. The method has an accuracy of 0.1%.

The amino acid sequences of the purified peptides were determined employing an automatic protein sequencer (model 494A; PerkinElmer Life Sciences) equipped with an online HPLC system for detection of the amino acid-phenylthiohydantoin derivatives. All chemicals and solvents were sequence or HPLC grade supplied by PerkinElmer Life Sciences.

Size Exclusion Chromatography-- 200 µl of recombinant protein (10 µM) or cytosol in binding buffer with or without 0.5 mM Ca2+ was applied to a Superdex 75 column (FPLC system; Amersham Pharmacia Biotech) equilibrated in binding buffer with or without 0.5 mM Ca2+, and eluted fractions were analyzed by absorbance and/or grancalcin enzyme-linked immunosorbent assay. The following markers were used to calibrate the column: blue dextran 2000 (>2,000,000), ribonuclease A (13,700), chymotrypsinogen A (25,000), and ovalbumin (43,000).

Chemical Cross-linking-- Proteins were cross-linked with the chemical cross-linker DSG (Pierce) essentially as described (13). In short, proteins were incubated for 30 min at room temperature in 100 µl of cross-linking buffer (20 mM HEPES (pH 8.0), 50 mM NaCl, and 1 ml of dithiothreitol) to which 5 µl of DSG was added (from 10 mM stock in N, N-dimethylformamide). The reaction was quenched by the addition of 125 µl of 1 M Tris-HCl, pH 7.5, and cross-linking was evaluated by immunoblotting.

Ca2+-dependent Precipitation of Grancalcin and N-terminal Deletion Mutants-- Recombinant grancalcin at 2 or 10 µM and Delta 42-grancalcin and Delta 53-grancalcin at 10 µM in binding buffer (with or without 25 mM OG) were supplemented with varying concentrations of Ca2+ and rotated end over end for 30 min at room temperature. The tubes were centrifuged at 14,800 × g for 5 min. at 4 °C, and the supernatants were assayed by absorption to determine protein concentrations.

Metal Ion Removal and Cation Binding-- Since the method of trichloroacetic acid precipitation (14) irreversibly modified the Trp fluorescence spectra of grancalcin, the concentrated protein sample was supplemented with 1 mM EGTA, dialyzed overnight against buffer A containing 0.1 mM EGTA, and passed through a Sephadex G25 column (0.8 × 40 cm) equilibrated in buffer A (50 mM Tris-HCl buffer (pH 7.5), 150 mM KCl). The protein contained less than 0.1 mol of Ca2+/mol. Ca2+ binding was measured on the recombinant protein at 25 °C by the flow dialysis method (23) in buffer A. Protein concentrations were 25 µM. Processing of data and evaluation of the binding constants were as described (18).

Optical Methods to Probe the Trp Environment-- Emission fluorescence spectra were obtained in a PerkinElmer Life Sciences LS-5B spectrofluorometer. The measurements were carried out at 25 °C on 4 µM wild-type or recombinant grancalcin in buffer A in the presence of 37.5 mM OG with an excitation wavelength at 278 nm and both slits at 5 nm. Measurements were performed in the presence of either 50 µM EGTA, 0.5 mM CaCl2 or 4 M guanidine-HCl, respectively.

Isolation and Identification of Binding Partner for Grancalcin-- Recombinant grancalcin at 1 mg/ml in the presence of 0.5 mM CaCl2 or 0.5 mM EGTA was coupled to CNBr-activated SepharoseTM according to the manufacturer's instructions (Amersham Pharmacia Biotech). Three columns were packaged: one containing recombinant grancalcin in the presence of Ca2+, one containing recombinant grancalcin without calcium, and one without any protein present. Purified human neutrophils at 3 × 107 cells/ml were solubilized in solubilization buffer (10 mM HEPES (pH 7.4), 100 mM KCl, 25 mM OG, 0.2% cetyltrimethylammonium bromide, 1 mM phenylmethylsulfonyl fluoride, 200 units/ml aprotinin, 100 µg/ml leupeptin, and 100 µM EGTA) and incubated overnight at 4 °C. Unsolubilized material were spun down (5000 × g for 10 min), and 10 ml of supernatant, supplemented with 0.5 mM EGTA, were applied to each to each of the three columns. The columns were washed extensively in binding buffer plus 0.5 mM EGTA, and bound proteins were eluted with binding buffer plus 5 mM CaCl2. Fractions of 1 ml were collected and evaluated by SDS-PAGE. Fractions with a visible protein band were pooled and concentrated by centrifugation and subjected to SDS-PAGE. The identified band was cut out of the SDS gel and digested with trypsin essentially as described by Wilm et al. (24). In short, the gel piece was cut into small cubes and washed for 1 h in 100 mM NH4HCO3 (AB), and excess liquid was removed. Then the proteins were reduced for 30 min at 60 °C in 100 µl of 4 mM dithiothreitol in 100 mM AB, cooled, and alkylated by the addition of 10 µl of 100 mM iodoacetamide followed by a 30-min incubation at room temperature in the dark. Excess liquid was removed, and the gel pieces were washed for 1 h in 50% acetonitrile in 100 mM AB followed by shrinkage in acetonitrile and vacuum centrifugation. The tube with the dry gel pieces was placed in an ice bath and allowed to swell in 25 mM AB including 2 µg/100 µl modified trypsin (Promega). After 45 min, the excess liquid was removed, and buffer was added to cover the gel pieces during overnight incubation at 37 °C. The next day, the liquid was removed and combined with two consecutive extractions with 50 µl of 0.1% trifluoroacetic acid in 60% acetonitrile. The extract was dried in a vacuum centrifuge to near dryness followed by the addition of 5 µl of 0.1% trifluoroacetic acid in 30% acetonitrile. For analysis, 0.4 µl of the sample was mixed with 0.1 µl of internal standard mixture (angiotensin II and dynorphin, 0.06 and 1 pmol/µl, respectively) and 0.5 µl matrix solution (alpha -cyano-4 hydroxycinnamic acid) and measured by mass spectrometry as described above, except the instrument was upgraded with the time lag focusing option (delayed extraction). The peptide molecular mass fingerprint was used for a search of the SWISS-PROT and TrEMBL data base using the "PeptIdent" tool on the ExPASy Molecular Biology Server of the Swiss Institute of Bioinformatics (25).

Immunoprecipitation-- Cytosol from human neutrophils (prepared as described above) was diluted with binding buffer to a final concentration of 1 mg/ml (as determined by Bio-Rad). 5 µl of anti-grancalcin or anti-L-plastin antibodies (two different antibodies; LPL4A1, which binds to L-plastin irrespective of Ca2+ load, and LPL7,2, which only binds to the Ca2+-loaded form of L-plastin (described in Ref. 26), a kind gift from Dr. Eric J. Brown (Division of Infectious Disease, Howard Hughes Medical Institute, St. Louis, MO)) were added to 1 ml of the diluted cytosol in the presence of 0.5 mM CaCl2 or 5 mM EGTA, respectively. The solution were rotated end over end overnight at 4 °C. Next, 100 µl of protein A-Sepharose® beads (Amersham Pharmacia Biotech) (prepared in binding buffer as described by the manufacturer) were added, and the slurry was rotated end over end for 2 h at 4 °C. The tubes were centrifuged to pellet beads, and the supernatant was gently removed. The pellets were washed three times in binding buffer with either 0.5 mM CaCl2 or 5 mM EGTA present before reconstitution into the initial volume. Samples were run on SDS-PAGE and immunoblotted as described above. For immunoblotting with L-plastin and MRP14 antibodies, the following dilutions were used: LPL4A1 primary antibody, 1:1000; secondary antibody (goat anti-mouse (D0486) (Dako A/S, Glostrup, Denmark), 1:1000; LPL7,2 primary antibody, 1:1000; secondary antibody (rabbit anti-rat (P0450) (Dako A/S), 1:1000; MRP14 primary antibody (Bachem, Bubendorf, Switzerland), 1:2000 (biotinylated); secondary layer (avidine horseradish peroxidase (P0347) (Dako A/S)), 1:1000.

    RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Calcium-induced Hydrophobicity and Purification of Native Grancalcin-- One aim of this study was to determine if native grancalcin has a lipid anchor or other posttranslational modifications. Furthermore, we wanted to verify the reported N terminus of grancalcin. Since many EF-hand proteins expose hydrophobic areas upon binding of Ca2+, we tested if grancalcin also becomes hydrophobic in the presence of high concentrations of Ca2+. Human neutrophil cytosol was passed through a phenyl-Sepharose column in the presence of 0.5 mM Ca2+, and the column was washed with Ca2+ buffer. Replacement of Ca2+ by an excess of EGTA led to elution of a limited number of proteins (Fig. 1A). By Coomassie staining, several bands can be seen, which all are expected to be Ca2+-binding proteins or proteins that interact with Ca2+-binding proteins. Indeed, several well known Ca2+-binding proteins could be identified (data not shown). The band at 28 kDa, showing retarded EGTA elution, was identified as grancalcin by immunoblotting. Fractions containing grancalcin were further purified by anion-exchange chromatography as described under "Experimental Procedures." This resulted in pure grancalcin as evaluated by SDS-PAGE and immunoblotting (Fig. 1B). Thus, we here present a novel and fast protocol for purification of grancalcin from the cytosol of human neutrophils, based on its Ca2+-dependent binding to a hydrophobic matrix.


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Fig. 1.   Elution profile of neutrophil cytosolic proteins separated on a phenyl-Sepharose column (A) and purity of wild-type grancalcin (B). Human neutrophilic cytosol was loaded onto a phenyl-Sepharose column in the presence of 0.5 mM Ca2+ and washed in a Ca2+ buffer. Bound proteins were eluted with EGTA and collected in fractions of 2 ml. A, 14% SDS-PAGE profile of eluted proteins (Coomassie stain). Lane 1, molecular weight markers; lanes 2-9, fractions 2-9 of the EGTA eluate. Fractions containing grancalcin (28 kDa) were pooled and separated by ion exchange chromatography. B, ion exchange chromatography fractions containing grancalcin were concentrated and submitted to SDS-PAGE on 10% gels and identified by Coomassie staining (lane 1) and immunoblotting with anti-grancalcin antibodies (lane 3). Lane 2 shows molecular weight markers.

Purification of Recombinant Grancalcin and Three Deletion Mutants-- Recombinant grancalcin was produced and purified as described (3). The grancalcin clone was checked by conventional sequencing techniques and found to be identical with the published (2) sequence (data not shown). Recombinant grancalcin is synthesized as a glutathione S-transferase fusion protein linked by a cleavage site for thrombin and differs from prograncalcin (we use the term prograncalcin for the hypothetical protein corresponding to the coding sequence, including the N-terminal Met) by an additional Gly-Ser dipeptide at the N terminus, as was confirmed by N-terminal sequence analysis (data not shown). The molecular mass of purified recombinant grancalcin was determined to be 24,124 Da, in good agreement with the theoretical mass of 24,154 Da.

In order to solve solubility problems (see below), we also generated three mutants with varying deletions in the N terminus, named after the starting amino acid according to the nomenclature for prograncalcin: Delta 42-grancalcin, Delta 50-grancalcin, and Delta 53-grancalcin, respectively. All three mutants were easily expressed and purified to electrophoretic homogeneity (Fig. 2) following the same procedure as for recombinant grancalcin. Our polyclonal (rabbit) anti-grancalcin antibodies reacted with all three mutants (data not shown).


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Fig. 2.   Recombinant grancalcin and N-terminal mutants. Three N-terminal deletion mutants were generated and expressed in E. coli. The recombinant mutant proteins were isolated and purified as for recombinant grancalcin. Lane 1, molecular weight markers; lane 2, recombinant grancalcin; lane 3, Delta 42-grancalcin; lane 4, Delta 50-grancalcin; lane 5, Delta 53-grancalcin. The three mutants have, as expected, an increasingly higher mobility in SDS-PAGE as compared with recombinant grancalcin, due to their smaller molecular weight.

Peptide and Oligonucleotide Sequencing and Mass Spectroscopy of Wild-type and Recombinant Grancalcin-- The purified wild-type grancalcin gave no signal in protein sequence analysis, indicating that the N terminus is blocked. Moreover, by mass spectrometry wild-type grancalcin was found to have a molecular mass of 23,856 Da as compared with 24,010 Da calculated for prograncalcin (hypothetical protein, corresponding to the coding sequence), suggesting that the N terminus of wild-type grancalcin is modified. Cleavage of wild-type grancalcin with endoproteinase Glu-C resulted in a number of fragments, one of which had a measured molecular mass (2829.4 Da, obtained in the negative mode) matching that of fragment 2-28 of prograncalcin if it is N-terminally acetylated (calculated 2828.2 Da). To confirm that this peptide was indeed the N-terminal fragment, it was further digested with thermolysin, resulting in two fragments with molecular masses of 1101.2 and 1746.8 Da, respectively. Sequence analysis of the latter showed the first 6 residues to be Phe-Ser-Ile-Gln-Val-Pro. This sequence and the molecular mass indicate that this fragment represents prograncalcin 13-28 (calculated 1745.1 Da). The molecular mass of the former fragment (obtained in the negative mode, using internal calibration) fits precisely to the cDNA-deduced sequence of prograncalcin 2-12 bearing an N-terminal acetyl group (1101.1 Da). Including this modification, the theoretical molecular mass of wild-type grancalcin becomes 23916 Da.

Dimerization-- It was originally found that purified grancalcin exists as a homodimer (1), as also confirmed by the crystal structure (11). We wanted to examine if also cytosolic grancalcin and N-terminal mutants existed as dimers. Molecular sieve chromatography studies gave an apparent molecular mass of 40 kDa for recombinant grancalcin (Fig. 3A), and when cytosol was subjected to the same procedure and grancalcin was identified by immunoblotting, grancalcin also eluted as a 40-kDa protein. When the chromatography was performed in the presence of calcium, grancalcin eluted slightly later, with an apparent mass of 36 kDa. Thus, grancalcin is a dimer under all conditions, but the Ca2+-loaded form is slightly smaller, indicating conformational changes that make the complex more compact. N-terminal mutants all ran as dimers on molecular sieve chromatography (data only shown for Delta 42-grancalcin), verifying that the N terminus does not play a role in dimer formation. By chemical cross-linking with DSG, we could also verify that grancalcin is a functional dimer under all conditions tested (Fig. 3B) (data only shown for recombinant grancalcin and Delta 53-grancalcin).


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Fig. 3.   Molecular mass determination of grancalcin by molecular sieve chromatography and chemical cross-linking of grancalcin by DSG. A, 200 µl of recombinant grancalcin (10 µM) and cytosol in the absence and presence of Ca2+ and 200 µl of Delta 42-grancalcin were subjected to molecular sieve chromatography by FPLC. Grancalcin was detected by absorbance and enzyme-linked immunosorbent assay, and its peak elution volume (Ve) was used to calculate Kav according to the equation, Kav = (Ve - V0)/(Vt - V0). Ovalbumin (43 kDa), chymotrypsinogen A (25 kDa), and ribonuclease A (13.7 kDa) served as standards, and blue dextran 2000 was used to determine void volume (V0 = 8.04 ml) of the column, which had a total volume (Vt) of 24 ml. B, chemical cross-linking by DSG followed by immunoblotting of grancalcin. Lane 1, recombinant grancalcin and DSG; lane 2, recombinant grancalcin without DSG; lane 3, Delta 53-grancalcin and DSG.

Ca2+-dependent Precipitation of Grancalcin and N-terminal Mutants-- Precipitation of grancalcin was dependent on both the concentration of protein and Ca2+, and the presence of detergent increased the threshold for Ca2+-induced precipitation (Fig. 4A). Therefore, we have performed subsequent experiments at low protein concentrations and repeated the experiments in the presence of detergent. Furthermore, because the first 52 amino acids are disordered in the crystals of grancalcin (11) and contain many hydrophobic residues that might be responsible for the pronounced precipitation, we tested N-terminal deletion mutants. The precipitation experiment of Fig. 4B illustrates that, as predicted, the N-terminal mutants are more soluble in the presence of Ca2+ than the full-length protein (only data for Delta 42- and Delta 53-grancalcin are shown).


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Fig. 4.   Ca2+ precipitation of grancalcin and N-terminal deletion mutants. A, two concentrations of recombinant grancalcin, 10 and 2 µM (with or without 25 mM OG), were incubated with the indicated Ca2+ concentrations for 30 min. The tubes were then centrifuged, and the grancalcin concentration in the supernatant was determined by absorbance. The concentration values are normalized to incubations without Ca2+. B, Delta 42-grancalcin and Delta 53-grancalcin at 10 µM (with or without 25 mM OG) were incubated with the indicated Ca2+ concentrations for 30 min. The tubes were then centrifuged, and the protein concentration was determined as in A.

Direct Cation-binding Studies-- Evaluation of Ca2+ binding to recombinant grancalcin and N-terminal mutants by flow dialysis (Fig. 5) revealed two Ca2+-binding sites per monomer. In the absence of detergent (Fig. 5A), both recombinant grancalcin and the N-terminal mutants precipitated, but the N-terminal mutants precipitated only at the very end of the titration. In the presence of the detergent OG (Fig. 5B), the N-terminal mutants did not precipitate at all, whereas recombinant grancalcin precipitated at the very end. In the absence of detergent, recombinant grancalcin displayed a [Ca2+]0.5 value of 83 µM and moderate positive cooperativity (nH = 1.18). The truncated forms displayed [Ca2+]0.5 values of 140 µM (for Delta 42- and Delta 50-grancalcin) and 174 µM (for Delta 53-grancalcin) with no cooperativity (nH = 1.0). In the presence of 25 mM OG, recombinant grancalcin has a [Ca2+]0.5 of 25 µM with an nH of 1.1, whereas the truncated forms displayed a [Ca2+]0.5 of 35 µM (for Delta 42-grancalcin) to 50 µM (for Delta 50- and Delta 53-grancalcin) without any cooperativity or even slight negative cooperativity for Delta 53-grancalcin (nH = 0.94). Protein precipitation is a confounding factor in these flow dialyses, and the presence of detergent increases the affinity by a factor of 3, but it seems safe to conclude that grancalcin shows optimal Ca2+ sensitivity in the 25-83 µM range. The presence of 2 mM Mg2+ did not influence the binding curve (data not shown), indicating that the two sites are of the so-called Ca2+-specific type. Ca2+-specific sites seem to be common in the other proteins of the PEF family, as was also reported for ALG-2 (12). The selectivity of the calpain light chain EF-hands is not known, but the affinity of the recombinant protein for Ca2+ corresponds to [Ca2+]0.5 values of 60-150 µM (27), thus similar to that of grancalcin. ALG-2 has two Ca2+ binding sites of high affinity around 1-3 µM and one site of low affinity of 300 µM (28).


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Fig. 5.   Ca2+ binding to recombinant grancalcin and N-terminal deletion mutants. Ca2+ binding was measured by the flow dialysis method at 25 °C in 50 mM Tris-HCl, 150 mM KCl in the absence (A) and presence (B) of 25 mM OG, respectively. Protein concentration was 25 µM. open circle  and , recombinant grancalcin (two experiments); , Delta 42-grancalcin; black-square, Delta 50-grancalcin; black-diamond , Delta 53-grancalcin.

Intrinsic Trp Fluorescence-- Grancalcin contains two Trp residues (Trp118 and Trp124) as useful probes to monitor differences between wild-type and recombinant grancalcin as well as structural changes upon binding of Ca2+. After excitation at 278 nm of a solution of 1 µM wild-type or recombinant grancalcin in buffer A plus 37.5 mM OG, the emission fluorescence spectra of metal-free and Ca2+-saturated proteins show maxima between 325 and 335 nm (Fig. 6). This is characteristic for hiding of several Trp residues in a hydrophobic environment and was confirmed by the ~3-fold intensity decrease and 20-nm red shift of the fluorescence maximum when guanidine HCl was added. Saturating Ca2+ concentrations moderately increased the fluorescence, but Mg2+ had no influence (data not shown). It should be noted that all of the spectra of wild-type and recombinant grancalcin are very similar, suggesting that their secondary structure and hydrophobic cores must be very similar. Moreover, the signal change of the metal-free proteins as a function of the concentration of guanidine HCl yielded [Gua-HCl]0.5 values of 1.4 and 1.5 M for wild-type and recombinant protein (data not shown), respectively, indicating that both are equally stable.


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Fig. 6.   Trp fluorescence spectra of wild-type and recombinant grancalcin. Thin and thick lines, comparison of wild-type and recombinant grancalcin, respectively. Spectra were recorded at 25 °C on 1 µM protein in buffer A containing 37.5 mM OG and either 50 µM EGTA (gray line) or 1 mM Ca2+ (solid line). The spectra of the denatured forms (dashed line) were recorded after the addition of up to 4 M guanidine HCl.

Binding Partner of Grancalcin-- In order to identify proteins that might interact with grancalcin, we made three affinity columns: one containing recombinant grancalcin in the presence of Ca2+, one containing recombinant grancalcin without calcium, and one column with just the matrix as a negative control. At first, we applied a whole cell homogenate of human neutrophils to the columns in the presence of Ca2+ and eluted with EGTA, but this did not result in any visible protein. However, when we applied the homogenate to the columns in the presence of EGTA, washed extensively, and then eluted with Ca2+, a band of ~67 kDa was found in both the eluate from the Ca2+ (Fig. 7) and EGTA column but not from the mock column (not shown). The 67-kDa protein was concentrated by SDS-PAGE, cut out of the gel, and digested with trypsin, and the mixture of fragments was analyzed by mass spectroscopy. A data base search with this set of molecular masses identified L-plastin with a high score, covering 37% of the sequence distributed among 19 peptides with molecular masses matching the theoretical values within 50 ppm. L-plastin belongs to the plastin group of proteins, and L stands for leukocyte, indicating that it is the isotype present in leukocytes. Plastins are EF-hand proteins with actin-binding motifs, and they are known to have actin bundling activities. L-plastin has a molecular mass of 67 kDa and is well described in human neutrophils (26, 29, 30)


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Fig. 7.   Ca2+ eluate from grancalcin column, to which a whole neutrophil homogenate was applied. Whole cell homogenate of human neutrophils was loaded onto a grancalcin column in the presence of 0.5 mM EGTA and washed in an EGTA buffer. Bound proteins were eluted with 5 mM Ca2+ and collected in fractions of 1 ml. Fractional distribution of eluted proteins shown by SDS-PAGE on 10% gels followed by Coomassie staining (fractions 1-7 shown as lanes 2-8). A band of ~67 kDa (arrow) can bee seen in fractions 2-5 (lanes 3-6).

Immunoprecipitation-- We substantiated the interaction between grancalcin and L-plastin by co-immunoprecipitation experiments followed by visualization by immunoblotting with anti-grancalcin and anti-L-plastin antibodies, respectively. When evaluating the immunoblots, it is important to remember that grancalcin will precipitate in the presence of Ca2+ (as shown above), and this might introduce an artifact in the immunoprecipitation experiments. Immunoprecipitation of isolated cytosol from human neutrophils with L-plastin antibodies was, in the absence of Ca2+, able to also pull down grancalcin and vice versa as visualized by immunoblotting (Fig. 8, 1VI and 3VI). On the contrary, L-plastin could not be detected in the pellet, when cytosol was immunoprecipitated with anti-grancalcin antibodies in the presence of Ca2+ (Fig. 8, 3III). We therefore suggest that the fact that grancalcin could be found in the anti-L-plastin pellet is due to precipitation rather than immunoprecipitation. The Ca2+ specificity of the interaction between grancalcin and L-plastin is further supported by the fact that the L-plastin antibody LPL7,2, which only recognizes the Ca2+-loaded form of L-plastin, was not able to pull down grancalcin in the absence of Ca2+ (Fig. 8, 2VI). As a negative control, we also probed the immoprecipitates by immunoblotting with anti-MRP14 antibodies. MRP14 is a 14-kDa EF-hand protein that is highly enriched in the cytosol of human neutrophils (31). We did not detect any immunoprecipitation of MRP14 with either anti-grancalcin (Fig. 8, 4III and 4VI) or anti-L-plastin antibodies (data not shown). The specific co-immunoprecipitation of grancalcin and L-plastin in the absence of Ca2+ further corroborates the interaction between the two proteins.


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Fig. 8.   Immunoblots of fractions of human neutrophilic cytosol immunoprecipitated by anti-grancalcin and anti-L-plastin antibodies. Isolated human neutrophilic cytosol in the presence of either 0.5 mM CaCl2 (I, II, and III (+Ca2+)) or 5 mM EGTA (IV, V, and VI (-Ca2+)) were immunoprecipitated by anti-L-plastin (LPL4A1 (1) and LPL7,2 (2), respectively) and anti-grancalcin (3 and 4) antibodies, respectively. The starting material (I and IV), the supernatant (II and V), and the pellet (III and VI) were probed by immunoblotting with anti-grancalcin (1 and 2), anti-L-plastin (LPL4A1) (3), and anti-MRP14 antibodies (4). The LPL7,2 antibody only recognizes the Ca2+-loaded form of L-plastin.


    DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Purification and N Terminus-- The purpose of this study was to provide a detailed molecular description of the interaction of grancalcin with Ca2+ and the ensuing conformational changes and to identify a possible binding partner to grancalcin. The Ca2+-dependent binding of grancalcin to a phenyl-Sepharose column was used as a very efficient first step in the purification of wild-type grancalcin from the cytosol of human neutrophils. In this single chromatographic step, a limited number of proteins, all expected to be Ca2+-binding proteins, were highly enriched. Immunoblotting showed grancalcin to be present, and wild-type grancalcin could be separated from the other proteins in the eluate by subsequent ion exchange chromatography.

Sequence analysis of pure wild-type grancalcin suggested that the N-terminal amino group is blocked. The molecular mass of wild-type grancalcin is in agreement with posttranslational removal of the N-terminal methionine and acetylation of the adjacent alanine without any further modification of the protein, such as lipid attachment or glycosylation. N-terminal acetylation is a common posttranslational modification of cytosolic proteins (32), especially if the amino acid succeeding the initiating methionine is glycine, threonine, serine, or alanine (33). The N terminus of grancalcin has been reported to be Ile15 (1); however, our data strongly suggest that this is an artifact due to proteolysis during the purification procedure. Initially, we isolated grancalcin that started at Ser14, but inclusion of the protease inhibitors aprotinin and leupeptin prevented this proteolysis. Recombinant grancalcin was generated to pursue a systematic study of grancalcin. Recombinant differs from wild-type grancalcin by an additional Gly-Ser-Met tripeptide insert at the N terminus, which is not acetylated. Nevertheless, our data suggest that both proteins have very similar properties; moreover, they have the same stability toward the denaturing agent guanidine HCl and interact in a Ca2+-dependent manner with biological membranes (3).

Precipitation-- One of the most salient features of grancalcin is its high solubility in the metal-free form, whereas the Ca2+-saturated form is partly insoluble, depending on the protein concentration. Exposure of hydrophobic residues is probably the reason, since the protein is much more soluble in nonionic detergents and binds in a Ca2+-dependent way to phenyl-Sepharose. Grancalcin is much more soluble in the presence of Ca2+ than ALG-2 (12), and with working concentrations of grancalcin below 2 µM, Ca2+ precipitation does not seem to occur. Several EF-hand proteins bind to phenyl-Sepharose upon binding of Ca2+, but it is unusual for them to aggregate. It may be typical for the PEF subfamily, since ALG-2 (12, 13) and calpain (34) also form insoluble aggregates upon binding of Ca2+. The PEF proteins all have hydrophobic N termini, which could be of importance for precipitation. We therefore decided to generate N-terminal deletion mutants in order to test if this would improve the solubility in the presence of Ca2+. Indeed, we found that all three mutants were more soluble than the intact protein. We conclude that the N terminus is of importance for Ca2+-mediated precipitation. This suggests that conformational changes upon binding of Ca2+ are transduced into the N terminus to give important altered tertiary structure. Unfortunately, the crystal structure of grancalcin cannot help us in this regard, because the N terminus was disordered (11).

Ca2+ Binding-- Comparison of the sequence of EF-hands in grancalcin with those in well known Ca2+-binding proteins (6) led to the following predictions about their capacity to bind Ca2+: EF1 is very similar (64% identity) to that of calpain dVI and should bind Ca2+; EF2 is abortive, since the -Z position is occupied by Ala instead of Glu; EF3 is a canonical EF-hand with the correct residues for the coordination of Ca2+; EF4 is completely abortive due to lack of oxygen-carrying residues in three critical Ca2+-coordinating positions; and EF5 is very similar to that of calpain dVI (i.e. an abortive Ca2+-binding site) but well suited for dimerization. Flow dialysis confirmed the prediction that in grancalcin only two EF-hands, likely to be EF1 and EF3, bind Ca2+ with moderate affinity ([Ca2+]0.5 = 25-83 µM) and positive cooperativity (nH = 1.18). The crystallization of apograncalcin revealed that EF1 is not in a conformation that allows for Ca2+ binding, since the X and Y liganding oxygens are directed away from the center of the loop (11). EF3 displays a Ca2+-binding conformation, but even in the "calcium grancalcin" crystal only one Ca2+ ion was bound to one EF3 in the dimer. The corresponding site in the second molecule of the dimer is unoccupied and shows a much higher mobility. The conformations of apograncalcin and grancalcin with one Ca2+ are very similar. Moreover, the EF3-bound Ca2+ still seems to have a high mobility. Thus, the following binding model can be postulated. The first Ca2+ binds to one EF3 hand with rather low affinity and without provoking substantial conformational changes. Then the second EF3 binds Ca2+, leading to a reorientation of the hydroxyl group of Ser136, which supposes a major conformational change. The latter may activate EF1 in each subunit to bind Ca2+. Once activated, the affinity of EF1 may be higher than that of EF3, thus explaining the positive cooperativity. The forms with the truncated N-terminal domain still bind two Ca2+ ions/monomer but with an approximate 2-fold lower affinity and absence of positive cooperativity, suggesting that this domain is needed for cross-talk between EF1 and EF3 in fully Ca2+-saturated grancalcin. Since the structure of grancalcin with more than one bound Ca2+ could not be resolved due to precipitation of the protein (11), we expect that structural studies on the more soluble N-terminal mutants will allow the proposed binding model to be tested. The moderate affinity of grancalcin for Ca2+ is within the physiological range, especially at locations near the plasma membrane or near internal stores where the local Ca2+ changes can exceed 500 µM in activated human neutrophils (35). Furthermore, it is likely that the Ca2+ affinity for grancalcin increases in a hydrophobic environment as indicated by the prolonged elution of grancalcin from the hydrophobic column as compared with other Ca2+-binding proteins and by the higher Ca2+-affinity in the presence of detergent. Enhanced Ca2+ affinity when bound to membranes has been shown for other Ca2+-binding proteins (e.g. protein kinase C (36)).

Binding Partner-- We found that L-plastin interacts with grancalcin and that Ca2+ regulates the interaction in a negative fashion. L-plastin, like other plastin isoforms and fimbrin, is a mosaic protein containing 2 EF-hands, a calmodulin-binding domain, and two actin-binding domains (37). In resting cells, the Ca2+-binding sites are unoccupied, and most of L-plastin is involved in the cross-linking of F-actin fibers. Following stimulation of leukocytes with inflammatory stimuli such as formyl-methionine-leucine-phenylalanine or immune complexes that bind to Fcgamma receptors, L-plastin is phosphorylated at Ser5, and this in turn leads to integrin activation and subsequent increased adhesion (26, 29). At present, it is not known if the L-plastin-grancalcin complex in the absence of Ca2+ still has actin-bundling activity and if, in this complex, Ser5 can still be phosphorylated. Cell stimulation leads to a cytoplasmic Ca2+ rise with two consequences for L-plastin: 1) its actin-bundling activity is inhibited, at least in in vitro experiments (26); and 2) the L-plastin-grancalcin complex dissociates (this study). Thus, Ca2+ regulates the activity of L-plastin in a complex way, via endogenous EF-hand motifs and via grancalcin. At present it is not clear if binding of Ca2+ to L-plastin, to grancalcin, or to both, is necessary to inhibit the interaction between the two proteins. It is intriguing that calpain, the close relative of grancalcin, is known to regulate adhesion and thus migration through interaction with beta 1- and beta 3-integrins in Chinese hamster ovary cells (38), whereas calpain does not affect beta 2-integrins, the subtype present in human neutrophils (39). Grancalcin might thus have a role in human neutrophils similar to that of calpain in other cell types, namely regulation of adherence and migration through interaction with L-plastin. Further experiments will hopefully clarify the functional role of grancalcin and the importance of the interaction with L-plastin as well as the structural aspects of this interaction.

    ACKNOWLEDGEMENTS

We thank Hanne Kristensen and Allan Kastrup for technical assistance and Jack B. Cowland, Kim Theilgaard-Mönch, Daniel J. Carter, and Ole E. Sørensen for comments on the manuscript.

    FOOTNOTES

* This work was supported by the Danish Medical Research Council, the Desirée and Niels Ydes Foundation, and Swiss National Science Foundation Grant 31.53710.98. Part of this work was presented as a poster at the American Society for Cell Biology meeting in San Francisco, December 1998.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Dagger To whom all correspondence should be addressed: Novo Nordisk A/S, Krogshoejvej 53A, 2880 Bagsværd, Denmark. Tel.: 45 4442 1571; Fax: 45 4442 1213; E-mail: kalo@novonordisk.com.

Published, JBC Papers in Press, February 13, 2001, DOI 10.1074/jbc.M100965200

    ABBREVIATIONS

The abbreviations used are: PEF, penta-EF-hand; OG, octyl-beta -glucopyranoside; PAGE, polyacrylamide gel electrophoresis; PIPES, 1,4-piperazinediethanesulfonic acid; FPLC, fast protein liquid chromatography; HPLC, high pressure liquid chromatography; DSG, disuccinimidyl glutarate.

    REFERENCES
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ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
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