Rotational and Translational Motion of Troponin C*

Martin C. MoncrieffeDagger , Steven Eaton§, &Zbreve;eljko BajzerDagger , Christopher HaydockDagger , James D. Potter, Thomas M. Laue§, and Franklyn G. PrendergastDagger parallel

From the Dagger  Department of Biochemistry and Molecular Biology, Mayo Foundation, Rochester, Minnesota 55905,  Department of Molecular and Cellular Pharmacology, University of Miami School of Medicine, Miami, Florida 33101, and § Department of Biochemistry, University of New Hampshire, Durham, New Hampshire 03824

    ABSTRACT
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ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES

Time resolved fluorescence anisotropy and sedimentation velocity has been used to study the rotational and translational hydrodynamic behavior of two mutants of chicken skeletal troponin C bearing a single tryptophan residue at position 78 or 154 in the metal-free-, metal-bound-, and troponin I peptide (residues 96-116 of troponin I)-ligated states. The fluorescence anisotropy data of both mutants were adequately described by two rotational correlation times, and these are compared with the theoretically expected values based on the rotational diffusion of an idealized dumbbell. These data imply that the motion of the N- and C-terminal domains of troponin C are independent. They also suggest that in the metal-free, calcium-saturated and calcium-saturated troponin I peptide-bound states, troponin C is elongated, having an axial ratio of 4-5. Calcium or magnesium binding to the high affinity sites alone reduces the axial ratio to approximately 3. However, with calcium bound to sites III and IV and in the presence of a 1:1 molar ratio of the troponin I peptide, troponin C is approximately spherical. The metal ion and troponin I peptide-induced length changes in troponin C may play a role in the mechanism by which the regulatory function of troponin C is effected.

    INTRODUCTION
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ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES

The three-dimensional structures of troponin C (TnC)1 (1, 2), and the homologous protein calmodulin (CAM) (3, 4) revealed molecular architectures composed of globular N- and C-terminal domains joined by an extended alpha -helical linker. The globular domains contain a pair of EF-hand motifs (5), which are designed to coordinate metal ions. On the basis of the crystal structure of TnC, with calcium bound to the C-terminal domain sites (1, 2), Herzberg et al. (6) propose that the major conformational change that occurs when the regulatory N-terminal domain sites bind calcium involves the exposure of a hydrophobic patch resulting from the movement of the B/C helix away from the N/A/D helices. Subsequent structural data, for example, the high resolution NMR (7) and x-ray crystal structures of calcium-saturated (8) TnC and the x-ray crystal structure of the calcium-saturated N-terminal domain of TnC (9), have confirmed the validity of this model. However, TnC is but one component of a three-component complex, and the issue of whether the structural changes that occur in "isolated" TnC directly reflect its behavior in the functioning troponin complex remains unresolved. Additionally, it has been proposed that the hydrophobic patch that is exposed in the calcium-replete N- and C-terminal domains are binding sites for troponin I (10), and the structure and dynamics that TnC displays under such conditions is not known.

We have recently completed the steady-state optical spectroscopic characterization of two mutants of chicken skeletal TnC bearing a single Trp residue at positions 78 (F78W) and 154 (F154W) in the N- and C-terminal domains, respectively.2 The introduced Trp residue in both mutants is located at position -z + 1 of the EF-hand, which is immediately after the last metal ion coordinating residue in site II (F78W) and site IV (F154W), respectively. Both mutants were iso-functional with wild-type TnC in the restoration of contractile activity to TnC-depleted-skinned muscle fibers.3 The spectroscopic properties of Trp-154 are sensitive to calcium and magnesium binding at sites III and IV (11), while Trp-78 responds to calcium binding at both the N- and C-terminal domain sites. On the basis of the spectroscopic properties of the Trp residue, we surmised that the indole moiety is in a rigid molecular environment and that this feature should render these mutants useful in studying the overall dynamic behavior of TnC. The presence of a single Trp residue in either domain may also provide information about the local dynamics of the N- and C-terminal domains of TnC.

This paper reports a study of the rotational and translational motion of F78W and F154W. We have first used minimum perturbation mapping (12, 13) to explore possible conformation of the Trp residue in both F78W and F154W starting from the x-ray crystal structure of 2-calcium TnC (2). Additionally, time-resolved anisotropy decays of the Trp fluorescence and sedimentation velocity experiments have been used to obtain information regarding the rotational motion and the shape that TnC adopts in the metal-free-, metal-bound (calcium and magnesium)-, and calcium-troponin I peptide (residues 96-116 of troponin I)-ligated states, respectively. Our results suggest that the dynamics of metal-free, 2·Ca2+, and 2·Mg2+-TnC are consistent with that of flexible dumbbell and is similar to what has been found for the metal-free state of CAM (14). However, in the calcium-saturated state (with or without TnIp) and the 2·Ca2+TnIp state, the apparent domain motions are no longer detected, which is suggestive of a more rigid conformation. The sedimentation velocity data suggests that in the apo-, calcium-saturated- and calcium-saturated TnIp states, TnC is elongated with an axial ratio of 4-5. Calcium or magnesium binding to the high affinity C-terminal domain sites results in a contraction of the axial ratio to approximately 3, which is consistent with that found in the 2-calcium crystal structure of TnC (2), which has dimensions of 75 Å × 25 Å. However, in the presence of TnIp and calcium bound to the high affinity sites, TnC becomes approximately spherical.

    MATERIALS AND METHODS
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ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
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REFERENCES

Minimum Perturbation Mapping-- The initial structures used to obtain minimum perturbation maps were generated from the 2-calcium x-ray crystallographic coordinates of TnC (2), with bad contacts removed by 5 steps of conjugate gradient minimization. The side chains of Trp-78 and Trp-154 were subsequently built from the topology and parameter internal coordinates. The following residues were allowed to be free during the simulations: 20, 24, 35, 40, 43, 44, 47, 71, 73, and 80 (F78W); 98, 101, 102, 105, 113, 149, 151, 155, 157, and 158 (F154W). All nonpolar hydrogens were treated as extended heavy atoms, and the dielectric constant was equal to the distance in angstroms between interacting atoms. The charge on ionized side chains was reduced by 80%, and nonbonded interactions were switched off over the range 7-11Å. Calculations were performed on a Silicon Graphics, Inc. Indigo-2 computer using executable code derived from CHARMM (15) version 22 with topology and parameter files taken from CHARMM version 19.

Minimum perturbation mappings were computed on a 5° grid of Trp-78 and Trp-154 chi 1 × chi 2 torsion space (13). During minimization, chi 1 and chi 2 were constrained with a harmonic constraint energy constant of 400 kcal mol-1 rad2. At each of the 72 × 72 grid points, the free atoms were minimized using 40 steps of the steepest descent method followed by 240 steps with the Powell (16) method. SHAKE (17) was applied to all bonds involving hydrogen, and the system was minimized for an additional 40 steps by the Powell method. Grid points for which the final minimized energy exceeded 50 kcal mol-1 were considered outliers, and the map was interpolated at these points using bivariate interpolation (18).

Protein Preparation-- The expression and purification of the TnC mutants has been described previously.2 Metal-free protein samples were prepared by dialysis (twice) against a medium composed of 120 mM MOPS, 90 mM KCl, 2 mM EGTA at pH 7.0. After dialysis, the volume was adjusted with dialysate to yield a protein concentration of 7-10 µM for fluorescence or 16 µM for ultracentrifugation. Protein concentrations were calculated using the previously determined molar absorptivity values of 6.6 mM-1 cm-1 for F78W and 5.5 mM-1 cm-1 for F154W.2 Calcium-ligated states of the mutants were obtained by adding aliquoits of CaCl2 (Orion) so that the free calcium ion concentrations, determined as described in Robertson and Potter (19), were pCa 6.8 and pCa 3.5, corresponding to the 2-calcium and 4-calcium states. Additionally, the magnesium-saturated state was obtained by the addition of 2 mM MgCl2. The high concentration of MOPS used ensured that the pH changes accompanying metal ion binding to TnC were negligible.

Time-resolved Fluorescence-- The time-resolved anisotropy decay of the Trp fluorescence was measured using time-correlated single photon counting (20). Protein samples of approximately 7 µM concentration were excited at 300 nm using the frequency-doubled output of a cavity-dumped synchronously pumped Coherent 700 rhodamine 6G dye laser (Coherent), which was itself pumped by the frequency-doubled output of a Coherent Antares YAG laser. The emission was isolated using an interference filter (351 nm; 4 nm bandpass) and detected with a Hamamatsu R2809 microchannel plate photo-multiplier tube (Hamamatsu, Japan). The instrument response function (full width at half maximum) obtained by collecting scattered light from a suspension of nondairy creamer was 50 ps. Data channels (2048) were acquired using a Nucleus PCA-II data acquisition card (Oxford Instruments). Data acquisition was automated, and the parallel (Iparallel ) and perpendicular (Iperp ) components were obtained by alternately integrating the respective data sets for 30 s, to minimize the effects of laser instability, until the peak count in the parallel channel was approximately 2 × 104. The parallel and perpendicular components of the intensity decay are related to the anisotropy, r(t), and the total fluorescence intensity I(t) is related by
I<SUB>∥</SUB>(t)=<FR><NU>1</NU><DE>3</DE></FR> I(t)[1+2r(t)] (Eq. 1)
I<SUB>⊥</SUB>(t)=<FR><NU>1</NU><DE>3</DE></FR> I(t)[1−2r(t)] (Eq. 2)
with I(t) being modeled by a multiexponential function (20). Molecules lacking spherical symmetry are usually modeled as prolate or oblate ellipsoids, and under such circumstances, the anisotropy is expected to decay as a sum of exponentials given by
r(t)=r<SUB>0</SUB> <LIM><OP>∑</OP><LL>i<UP>=</UP>1</LL><UL>5</UL></LIM> &ggr;<SUB>i</SUB><UP>exp</UP><SUP><UP>−</UP>t/&phgr;<SUB>i</SUB></SUP> (Eq. 3)
where r0 is the fundamental or zero-time anisotropy, and the pre-exponential factors, gamma i, and the rotational correlation times, phi i, are functions of the rates of rotation about the molecular axes of the molecule and the orientation of the absorption and emission dipoles relative to these axes (21-23).

Data analysis of the time-resolved anisotropy decay was performed using the program ANISO,4 employing cubic discretization of the instrument response function. The parameters were estimated by the maximum-likelihood method (24), which minimizes the Poisson deviance,
<UP>D</UP>=2 <LIM><OP>∑</OP><LL>k<UP>=</UP>1</LL><UL>n</UL></LIM>[c<SUB>k ∥</SUB><UP>ln</UP>(c<SUB>k ∥</SUB>/F<SUB>k ∥</SUB>)−c<SUB>k ∥</SUB>+F<SUB>k ∥</SUB>]+[c<SUB>k ⊥</SUB><UP>ln</UP>(<UP>c<SUB>k ⊥</SUB>/F</UP><SUB><UP>k ⊥</UP></SUB>)<UP>−c<SUB>k ⊥</SUB>+F</UP><SUB><UP>k ⊥</UP></SUB>] (Eq. 4)
Here ck parallel and ck perp denote the measured counts for the parallel and perpendicular polarized components, and Fk parallel and Fk perp are the corresponding theoretical expressions for the number of counts, that is,
F<SUB>k s</SUB>=<LIM><OP>∫</OP><LL>t<SUB>k<UP>−</UP>1</SUB></LL><UL>t<SUB>k</SUB></UL></LIM><UP>d</UP>t<LIM><OP>∫</OP><LL>0</LL><UL>t</UL></LIM>R(u+&dgr;)I<SUB>s</SUB>(t−u)<UP>d</UP>u+&zgr;R<SUB>k</SUB>+b (Eq. 5)
where s denotes the parallel (parallel ) or perpendicular (perp ) component, and the integrals are discretized as explained in Bajzer et al. (25). R is the instrument response function with
R<SUB>k</SUB>=<LIM><OP>∫</OP><LL>t<SUB>k<UP>−</UP>1</SUB></LL><UL>t<SUB>k</SUB></UL></LIM>R(t)<UP>d</UP>t (Eq. 6)
delta  is the zero-time shift, xi  is a light scattering correction, and b is the presumed constant background parameter. The criteria for "goodness of fit" included f tests applied to the Poisson deviances (that are distributed as chi 2) for models having different numbers of rotational components and the required randomness of the residuals (26). The steady-state anisotropy, rss, which is the average of r(t) weighted by the total intensity I(t) (27), was calculated using the following.
r<SUB>ss</SUB>=<FR><NU><LIM><OP>∫</OP><LL>0</LL><UL>∞</UL></LIM>I(t)r(t)<UP>d</UP>t</NU><DE><LIM><OP>∫</OP><LL>0</LL><UL>∞</UL></LIM>I(t)<UP>d</UP>t</DE></FR> (Eq. 7)

The experimentally obtained rotational correlation times were compared with those expected for an idealized dumbbell using equations developed by Garcia de la Torre and Bloomfield (28-30). This procedure considers a dumbbell to be composed of two large spheres of diameter sigma 1 connected by smaller spheres of diameter sigma 2. The equation describing the rotational diffusion coefficient for rotation about an axis perpendicular to the main symmetry axis, Drperp , is
<FR><NU>8&pgr;&eegr;&sfgr;<SUP>3</SUP><SUB>1</SUB></NU><DE>k<SUB>B</SUB>T</DE></FR> D<SUP>⊥</SUP><SUB>r</SUB>=0.2675 <UP>exp</UP><FENCE><LIM><OP>∑</OP><LL>i<UP>=</UP>1</LL><UL>i<UP>=</UP>3</UL></LIM> <LIM><OP>∑</OP><LL>j<UP>=</UP>1</LL><UL>j<UP>=</UP>3</UL></LIM> c<SUB>ij</SUB><FENCE><FR><NU>L</NU><DE>&sfgr;<SUB>1</SUB></DE></FR></FENCE><SUP>i</SUP><FENCE><FR><NU>&sfgr;<SUB>2</SUB></NU><DE>&sfgr;<SUB>1</SUB></DE></FR></FENCE><SUP>j</SUP></FENCE> (Eq. 8)
where eta  is the viscosity at temperature T, and kB is the Boltzmann constant. The coefficients cijare given by Table I of Garcia de la Torre and Bloomfield (30) and are valid for L/sigma 1 < 10 and sigma 1/sigma 2 < 1. To calculate the anisotropy decay of the model dumbbell, the rotational diffusion coefficient for rotation about the main symmetry axis, D1, given by
D<SUB>1</SUB>=<FR><NU>k<SUB>B</SUB>T</NU><DE>4&pgr;&eegr;</DE></FR> 14&sfgr;<SUP>3</SUP><SUB>1</SUB>+L&sfgr;<SUP>2</SUP><SUB>2</SUB> (Eq. 9)
is also required (31). The functional form for the decay of the fluorescence anisotropy in terms of the diffusion coefficients for rotation about D1 and Drperp for a system with three rotational correlation times is similar to Eq. 3 with phi 1 = (4D1 + 2Drperp )-1, phi 2 = (D1 + 5Drperp )-1, and phi 3 = (6Drperp )-1 (31).

The expected rotational correlation times for the TnC mutants were calculated using hydrated volumes of 27,973 Å3 and 34,045 Å3, corresponding to a commonly used value for the degree of hydration for globular proteins of 0.2 g of H2O/g of protein (27) and the value of 0.4 g of H2O/g of protein suggested by Hubbard et al. (32). In all calculations, the value of sigma 2 was 3.5 Å.

Ultracentrifugation-- Equilibrium sedimentation experiments were performed at 23.3 °C using short column (0.7 mm) cells (33) and Rayleigh interference optics on a Beckman Model E analytical ultracentrifuge equipped with a electronic speed control, RTIC temperature controller. and a pulsed laser diode light source (670 nm). Data were acquired at speeds of 10,000, 20,000, 30,000, and 40,000 revolutions/minute using a television camera-based online data acquisition and analysis system (34). Identical experiments were also conducted in a Beckman XL-I ultracentrifuge at 20 °C. Sample concentrations were approximately 16, 8, and 5 µM, and data was collected at intervals after the estimated time to equilibrium and tested for equilibrium by subtracting successive scans (35). Data within the optical window were selected and analyzed to estimate the molecular weight of the various species using the program NONLIN (36). Sedimentation velocity experiments were performed on a Beckman XL-I instrument equipped with absorption or Rayleigh interference optics (37), a 4-hole titanium rotor, 6-channel, 12-mm-thick charcoal-filled epon centerpieces, and appropriate windows. Experiments were conducted at 60,000 revolutions/minute at 20 °C. Data were acquired at 1-s intervals to produce sedimentation coefficient distributions according to the method described by Stafford (38). Estimates of the shape of the TnC mutants were obtained by calculating Perrin shape factors and the corresponding axial ratio of an ellipsoid. The Perrin shape factor, F, is defined as
F=s<SUB>0</SUB>/S<SUB><UP>obs</UP></SUB> (Eq. 10)
where sobs is the measured sedimentation coefficient, and s0, that of an equivalent spherical molecule having a radius R0·s0, is calculable from
s<SUB>0</SUB>=<FR><NU>M(1−<A><AC>&ngr;</AC><AC>&cjs1171;</AC></A>&rgr;)</NU><DE>6&pgr;&eegr;N<SUB>A</SUB>R<SUB>0</SUB></DE></FR> (Eq. 11)
where M is the mass of the particle, nu , the calculated partial specific volume (0.72 g-1 cm3) based on the amino acid sequence, eta  is the solvent viscosity, NA is Avogadro's number, R0 = [3M(1 + delta )nu /4pi NA]1/3, rho  is the density and delta  is the degree of hydration.

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Minimum Perturbation Mapping-- The minimum perturbation approach is based on the assumption that the overall structure of a stable mutant differs from the wild-type protein only in the positions of the backbone and side chain atoms that are neighbors of the mutant side chain. Consequently, the method provides simple estimates of the possible conformation of the mutant side chain (12). Minimum perturbation maps for Trp-78 and Trp-154 are shown in Fig. 1. The map for Trp-78 has two wells, and the trans-perpendicular (tp) well is about 11 kcal/mol more stable than the trans-antiperpendicular well. The Trp-154 map has one distinct well (tp). The maps predict that in both mutants, the trans-perpendicular tryptophan conformation predominates over other side chain conformations. Because the structure of neither mutant has been solved crystallographically, the possibility that other tryptophan conformations are significantly populated or even predominate cannot be absolutely excluded. We investigated the possibility that alternate packing of neighboring side chains might stabilize other tryptophan conformations by calculating minimum perturbation maps for each tryptophan mutant with the side chains neighboring truncated at the beta -carbon position (maps not shown). The Trp-78 map with the indole ring-truncated neighbor side chains has the gauche-antiperpendicular well stabilizing to within 4 kcal/mol of the tp well and has both the tp and ga wells splitting into two sub-wells of similar stability. The Trp-154 map with truncated neighbor side chains also has a ga well that is about 4 kcal/mol less stable than the tp well. Although these results confirm that crystal structures of the TnC mutants are required in order to be certain about the predominant tryptophan side chain conformations, they imply that there may be multiple conformations of the Trp residue, and the interconversion between these conformations may perhaps influence the anisotropy decays of the Trp residue.


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Fig. 1.   Minimum perturbation maps of Trp-78 (left) and Trp-154 (right) chi 1 × chi 2 isomerization in the mutants of chicken skeletal TnC. The map for Trp-78 has wells in the trans-perpendicular (tp) and trans-antiperpendicular (ta) orientations, whereas that for Trp-154 has one well (tp). The contour lines within a well are 1, 3, 5, 7, 9 kcal/mol (dashed) and 2, 4, 6, 8, 10 kcal/mol (solid) apart. Subsequent contours are separated by 10 kcal/mol.

Time-resolved Fluorescence-- We have used the time-resolved fluorescence anisotropy decay of the Trp moiety in the TnC mutants to obtain information about the rotational dynamics of TnC. Fig. 2 shows typical time-resolved intensity decay data, which upon analysis, yielded the parameters given in Table I. The time-resolved fluorescence anisotropy decay of the Trp fluorescence from F154W was, except for the metal-free state, dominated by the "long" rotational component, phi 1, which accounted for approximately 72-81% of the total anisotropy decay under the sample conditions listed in Table I. In the metal-free state of F154W at 20 °C, the recovered rotational correlation times are 3.1 ns and 0.57 ns, with the zero-time (r0) and steady-state (rss) anisotropy being 0.23 and 0.07, respectively. Metal ion binding to the high affinity sites in the C-terminal domain increases the recovered phi 1 and rss values relative to that obtained in the metal-free state, whereas the r0 value remains unaltered. However, the phi 1 value is sensitive to the type of metal ion occupying the C-terminal domain sites. Thus, the recovered phi 1 value for the 2·Ca2+ state of F154W was 4.1 ns, and that for the 2·Mg2+ state was 3.4 ns. This suggests that the structure of the 2·Ca2+ and 2·Mg2+ states of TnC are different and is consistent with the fluorescence emission spectral behavior of F154W under conditions where the high affinity sites are saturated by calcium or magnesium ions.2 TnIp binding to 2·Ca2+-F154W results in a recovered phi 1 value of 8.1 ns and an rss value of 0.12. In the calcium-saturated state of F154W, the recovered phi 1 value is 11.7 ns, and the value of the short rotational component is almost an order of magnitude less than those obtained in the apo-, 2·Ca2+, 2·Mg2+, or 2·Ca2+-TnIp states. The recovered r0 value for the calcium-saturated state is 0.29, which is close to the value of 0.31 obtained by steady-state emission anisotropy measurements in 67% glycerol at -46 °C.5 Additionally, the value of the recovered steady-state anisotropy for the 4·Ca2+ state was approximately 44% higher than that for the metal-free state. In the presence of saturating concentrations of calcium and TnIp, the recovered parameters are almost identical to those of the calcium-saturated state.


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Fig. 2.   Perpendicular (A) and parallel (B) polarized components of the intensity decay of F154W at 20 °C. The insets are the residuals (R) and auto-correlation (AC). The last 48 channels from this data set were truncated before fitting. Each channel represents a time point of approximately 10.9 ps. Protein concentration was 7 µM, and the solution composition was 100 mM MOPS, 90 mM KCl, 2 mM EGTA, pH 7.0, at 20 °C.

                              
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Table I
Parameters recovered from the analysis of the time-resolved fluorescence anisotropy decay data of the TnC mutants at 20 °C
The two rotational correlation times phi 1 and phi 2 and their corresponding amplitudes, beta 1 and beta 2 as well as the steady-state anisotropy (rss) and the anisotropy at zero time (r0) are shown. The uncertainties in the recovered parameters were obtained from 100 Monte-Carlo simulations. Protein concentrations were approximately 7 µM, and the solution composition was 100 mM MOPS, 90 mM KCl, 2 mM EGTA, pH 7.0, at 20 °C.

The time-resolved fluorescence anisotropy decays of F78W were dominated by phi 1, which accounted for 72-86% of the total anisotropy decay. In the metal-free state, the recovered phi 1 value of 7.04 ns for this mutant was approximately 2× greater than the corresponding value for F154W. This suggests that the motional components of TnC that are sensed by Trp-78 and Trp-154 are different. Magnesium binding to the high affinity sites results in a reduction of the phi 1 value relative to that of the metal-free state. This implies that magnesium binding to sites III and IV alters the conformation of the C-terminal domain such that the motional component detected by Trp-78 is different than that of the apo state. When calcium replaces magnesium at the high affinity sites, the recovered phi 1 value is the same at that obtained for the metal-free state. The r0 and rss values for the metal-free, magnesium-saturated, and 2·Ca2+-bound states are almost identical. TnIp binding to 2·Ca2+-F78W increases the recovered phi 1 value by approximately 3 ns. The r0 and rss values are similar to those of the metal-free, 2·Ca2+ and 2·Mg2+ states. The phi 1 and phi 2 values for the calcium-saturated state of F78W are 11.47 ns and 0.09 ns, respectively. The recovered r0 value is identical to that obtained by steady-state emission anisotropy measurements in 67% glycerol at -46 °C,5 and the rss value was 0.16. The parameters recovered for 4·Ca2+ state of F78W are remarkably similar to those obtained for the analogous state of F154W as well as the 4·Ca2+-TnIp state of F154W and suggest that Trp-78 and Trp-154 are detecting the same components of TnCs motion.

The available high resolution structures have established that TnC adopts a dumbbell shape in the 2·Ca2+ and 4·Ca2+ states (1, 7, 8). While high resolution structural data of the metal-free state of TnC is currently unavailable, such data exists for the homologous protein CAM (39). Metal-free CAM exists as a dumbbell, and it is plausible that metal-free TnC is similarly shaped. To compare the recovered rotational correlation times to those expected for TnC, we have calculated the rotational diffusion coefficients for the dumbbell shape depicted in the x-ray and NMR high resolution structures of TnC using the analytical procedures developed by Garcia de la Torre and Bloomfield (28-30). Fig. 3 shows the predicted rotational correlation times of a dumbbell as a function of its length, assuming hydration values of 0.2 and 0.4 g of H2O/g of protein, and Fig. 4 depicts some of the possible motions of TnC. As expected, the values of the rotational correlation time depend on the presumed degree of hydration. Assuming that the length of TnC in solution is 75Å, which is the value observed in the 2·Ca2+ crystal structure (2), the predicted rotational correlation times at 20 °C would be 17, 14, and 10 ns for a hydration of 0.4 g of H2O/g of protein and 14, 12, and 8 ns for a hydration of 0.2 g of H2O/g of protein. For 2·Ca2+-F154W, the recovered phi 1 value of approximately 4 ns is substantially less than the shortest expected rotational correlation time (6Drperp -1). This also holds for the metal-free and 2·Mg2+-bound states, if the shape of TnCs under these conditions is similar to that of the 2·Ca2+ state. For the 4·Ca2+ and 4·Ca2+-TnIp states of F154W and the 4·Ca2+ state of F78W, the phi 1 values recovered from the r(t) data are consistent with those calculated from (D1 + 5Drperp )-1, assuming that the degree of hydration is 0.2 g of H2O/g of protein. The phi 1 values recovered from the r(t) data for the metal-free, 2·Ca2+, and 2·Mg2+ states of F78W are shorter than 1/6Drperp , whereas that for the 2·Ca2+-TnIp state of F154W is close to this value for a degree of hydration of 0.2 g of H2O/g of protein.


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Fig. 3.   Predicted rotational correlation times (phi ia = 1-3) of a rigid dumbbell as a function of total length and the degree of hydration. ---, (phi  = 0.4 g of H2O/g of protein; - - -, phi  = 0.2 g of H2O/g of protein.


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Fig. 4.   Possible rotational motions of TnC. A, rotational diffusion about an axis parallel to the main symmetry axis (D1) and perpendicular to the main symmetry axis (Drperp ); B, motion about a hinge in the central helix.

The low phi 1 value obtained for the apo state of F154W prompted us to examine the effect of viscosity on the rotational motion of Trp-154. Fig. 5 shows the effect of varying the external viscosity by additions of sucrose on the long and short rotational components of the apo state of F154W. The phi 1 value scales linearly with the external viscosity, whereas the short rotational component, phi 2, does not. Similar results were also observed when the external viscosity was altered by changes in temperature. Thus, although the magnitude of the phi 1 value for the apo state of F154W is perhaps not indicative of the overall rotational motion of TnC, its dependence on the external viscosity suggests that is probably represents "hinge bending" motions of the two domains of TnC (40).


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Fig. 5.   Reciprocal of the recovered rotational correlation times for F154W as a function of T/eta . The top graph shows the data (open circle ) and fit (---) to a straight line for the long rotational component, whereas the variation of the short rotational component () is shown below. The external viscosity was adjusted by additions of sucrose (10-60%). cp-1, centipoise.

Analytical Ultracentrifugation-- It is difficult to ascribe physical meaning to the rotational correlation times recovered from the r(t) data and make inferences regarding the shape that TnC adopts in solution from the fluorescence anisotropy data only (41). To obtain information about TnC shapes, especially under solution conditions for which high resolution structural data is unavailable, we have measured sedimentation coefficients by velocity sedimentation. Fig. 6 shows typical results for F154W in the metal-free, 2·Ca2+, 2·Mg2+-states and also in the presence of saturating concentrations of calcium (in the absence of trifluoroethanol). In general, the g(s) distributions had a single Gaussian component, except in those experiments conducted in trifluoroethanol that usually had a small component at 0.95-1.0 S. The experimentally obtained sedimentation coefficients, the calculated Perrin shape factors, and the resulting axial ratios are presented in Table II.


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Fig. 6.   Sedimentation coefficient distribution of F154W in the metal-free (lightface solid line), 2·Mg2+ (dashed line), and 2·Ca2+ (boldface solid line) states at 20 °C. Protein concentrations were 5-16 µM, and the solution composition was 100 mM MOPS, 90 mM KCl, and 2 mM EGTA, pH 7.0.

                              
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Table II
Calculated sedimentation coefficients of F154W obtained from sedimentation velocity measurements at 20 °C
The Perrin shape factor (F) and the corresponding axial ratio as well as the predicted hydrodynamic shapes are also given. F was calculated assuming a hydration of 0.4 g of H2O/g of protein (32) and a calculated <A><AC>&ngr;</AC><AC>&cjs1171;</AC></A> of 0.7213 cm3g-1 based on amino acid sequences. The error in the calculated sedimentation coefficients is approximately 10%. Protein concentrations were 16, 8, and 5 µM, and the solution composition was 100 mM MOPS, 90 mM KCl, 2 mM EGTA, pH 7.0, at 20 °C.

In the metal-free and calcium-saturated states, the sedimentation coefficient is 1.6 S. From this value, an axial ratio of 4-5 can be calculated that is at the higher limit of axial ratios normally associated with globular proteins (42), suggesting that the molecule is in an extended conformation. The addition of either calcium or magnesium to the high affinity sites results in a contraction of the axial ratio to a value of 3. An axial ratio of 3 for the 2·Ca2+ state of TnC is consistent with that observed in the x-ray crystal structure (2) and suggests that the overall shape of molecule when the high affinity sites are saturated with calcium or magnesium is similar. The addition of TnIp to 2·Ca2+-F154W results in a further reduction of the axial ratio to 1.0, indicative of a spherically symmetric molecule.

    DISCUSSION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES

The primary objectives of this work are interpretation of the parameters recovered from an analysis of time-resolved fluorescence anisotropy decay data of the single Trp mutants of TnC and to make inferences regarding the effect of ligand binding on the dynamic behavior of TnC. The x-ray crystal structures of 2·Ca2+ TnC at pH 5.1 (2) and of calcium-saturated TnC at pH 7.2 (8) as well as the NMR solution structure of calcium-saturated TnC at pH 7 (7) reveal that TnC adopts a dumbbell shape. We have calculated the rotational correlation times expected of an ideal dumbbell having the dimensions of TnC using the analytical procedure developed by Garcia de la Torre and Bloomfield (29-30) and Small and Anderson (31). Ideally, a comparison of the theoretically predicted and experimentally obtained rotational correlation times should allow one to ascribe each measured correlation time to rotational diffusion about a particular molecular axis. A comparison of the predicted rotational correlation times with those obtained from an analysis of the time-resolved anisotropy decays reveals that, although the model predicts three rotational correlation times (phi 1-phi 3) for the dumbbell-shaped TnC, only two are recovered experimentally. The inability to recover more than two-rotational components from time-resolved anisotropy decays is consistent with previous reports in the literature (43-45).

Although the magnitude of the recovered phi 1 values, under some conditions (the calcium saturates states, for example) are consistent with those expected for the shortest predicted times (1/6Drperp ), the phi 2 values are much too short to represent overall rotational motions of TnC. The simplest and perhaps most intuitive explanation for these findings is that in solution, TnC is not the rigid dumbbell depicted by the crystal structures. Indeed, the finding that there is detectable fluorescence energy transfer between Tyr-10 and Tyr-109 of rabbit skeletal TnC (46), a condition which necessitates that the separation between these residues be less than or equal to 10 Å, supports this idea, or at the very least, that there is flexibility, presumably, about the central helix of the molecule. Alternatively, it may be argued that motions leading to the predicted long correlation times exist but are undetected by the fluorescence anisotropy decay measurements or that current methods of data analysis are incapable of resolving more than two rotational components. An inspection of Eq. 3 reveals that the magnitude of pre-exponential factor, gamma i, will dramatically influence the ability to recover a particular rotational correlation time. Specifically, if gamma i right-arrow 0, that rotational component, phi i, would not be recovered. Given the angle (theta ) between the absorption and emission dipoles, the dependence of the anisotropy decay amplitudes on the angle between a chosen symmetry axis and the dipoles can be determined. Such an analysis reveals, as was the case for the dityrosine derivative of CAM (31), that there are only a few possible orientations of the dipoles where one might recover more than one correlation time describing the rotational motion of the molecule.

At 20 °C, the recovered phi 1 value for metal-free F78W is approximately two times greater than the corresponding value for F154W, implying that the motion "sensed" by the Trp moiety in these two mutants are different. Although not supported by available data (47), the glycine residue in the central helix of TnC has been suggested to be a possible "hinge region" (1) that would allow the N- and C-terminal domains to move relative to each other. In an NMR study of the backbone and methyl dynamics of the regulatory domain of chicken skeletal TnC (residues 1-90), Gagné et al. (48) report an overall rotational correlation time for the metal-free state of 4.86 ± 0.15 ns at 29.6 °C. From our measurements, the phi 1 value of Trp-78 in the metal-free state at 30 °C is 5.12 ± 0.05 ns. This lends support to the notion that Trp-78 senses the motion of the N-terminal domain. Also, the 3 ns phi 1 value recovered for the apo state of F154W likely represents the rotational motion of the C-terminal domain. This value is somewhat smaller than the 4 ns that would be expected of a spherical C-terminal domain based on molecular weight and most likely reflects the less ordered nature of this domain relative to the N-terminal domain in the apo state (49, 50). This interpretation is supported by the fact that the recovered phi 1 values for the 2·Ca2+ state of F154W, where presumably, the C-terminal domain is more ordered, is approximately 4 ns.

Additional support for the idea that the values of the long correlation times of F154W reflect domain motion, particularly in the apo, 2·Mg2+, and 2·Ca2+ states of these mutants is obtained when the effect of viscosity on the recovered phi 1 values are examined. Because the frictional coefficient is proportional to solvent viscosity, protein motions consisting of large scale fluctuations (the hinge-bending motions of two domains, for example) will be influenced by the solvent viscosity (40). Thus, the component representing the overall motion is expected to scale with the external solvent viscosity, whereas those representing local motions should be relatively insensitive to the external viscosity. As is evident from Fig. 5, the phi 1 values of Trp-154 in the apo state of F154W scale with external viscosity in contrast to the phi 2 values. The recovered phi 2 values are significantly greater than the approximately 40 ps expected for the local motion of the Trp residue. Given our interpretation that the mutants are ostensibly sensing the independent motions of the N- and C-terminal domains, we believe that the phi 2 values actually represent the superposition of the domain motion of TnC on the localized motion of the Trp residue.

We have used sedimentation velocity measurements to obtain estimates regarding the shape TnC adopts when various ligands are bound, as this is not readily obtained from the r(t) data alone. Although a distinction between an axial ratio of 4 and 5 cannot be made, the sedimentation data (see Table II) clearly suggests that in the metal-free, 4·Ca2+, and 4·Ca2+-TnIp states, TnC is in an extended conformation. The increased steady-state anisotropy values for the Ca4+ and Ca4+-TnIp states relative to the metal-free state implies a decrease in the "flexibility" of the Trp residue TnC, and this is perhaps responsible for the longer phi 1 values obtained under these conditions. For the 2·Ca2+-TnIp state, however, TnC has approximately spherical symmetry, and consequently, the phi 1 value should truly represent the rotational motion of the whole molecule. The compact globular shape that TnC apparently adopts in the presence of TnIp and calcium bound to the high affinity sites as suggested by the sedimentation data disagrees with interpretations of the x-ray scattering data of Blechner et al. (51), who infer that the molecule was extended in the 2·Ca2+-TnIp state. The recently solved crystal structure of TnC bound to a TnI peptide (residues 1-47 of TnI) (52) revealed a complex having a compact globular shape in contrast to the dumbbell structure of the 2·Ca2+ and 4·Ca2+ states and suggests that peptide binding to TnC can result in structures similar to that seen with CAM (53).

The data presented here may have important implications regarding the function of the troponin complex, assuming that the behavior of the TnC-TnIp complex mirrors that of TnC-TnI. These are: (i) within the troponin complex, under conditions where the high affinity sites of TnC are occupied by calcium ions, TnC has a compact, essentially spherical shape; ii) calcium binding to the regulatory sites, which provides the signal for muscle contraction, results in TnC becoming elongated. This latter observation is consistent with previous reports (7) and the results of Stone et al. (54), who found that in a complex consisting of calcium-saturated TnC and TnI, TnC was elongated. Thus, the conformational switch that signals muscle contraction may involve not only the exposure of the hydrophobic patch in the N-terminal domain but alterations in the shape of TnC, which either allow or prevent its interactions with other members of the troponin complex.

    ACKNOWLEDGEMENT

We thank Dr. Enoch W. Small for helpful discussions and for providing the FORTRAN program used to calculate the rotational diffusion coefficient Drperp and Mr. Peter Callahan for his assistance in producing Fig. 4.

    FOOTNOTES

* This work was supported by National Institute of Health Grants GM34847 (to F. G. P.) and AR37701 (to J. D. P.).The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

parallel To whom correspondence should be addressed: Dept. of Biochemistry and Molecular Biology, Mayo Foundation, 200 First St. SW, Rochester, MN 55905. Tel.: 507-284-3753; Fax: 507-284-9349; E-mail: prendergast{at}mayo.edu.

2 M. C. Moncrieffe, S. Yu Venyaminov, T. E. Miller, G. Guzman, J. D. Potter, and F. G. Prendergast, submitted for publication.

3 J. D. Potter, J. D. Guzman, J. Zhao, and T. Miller, unpublished information.

4 Z. Bajzer, I. Penzar, M. C. Moncrieffe, and F. G. Prendergast, manuscript in preparation.

5 M. C. Moncrieffe and F. G. Prendergast, unpublished data.

    ABBREVIATIONS

The abbreviations used are: TnC, troponin C; CAM, calmodulin; TnIp, troponin I peptide (residues 96-116); MOPS, 4-morpholinepropanesulfonic acid; tp, trans-perpendicular; ta, trans-antiperpendicular.

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