Association with the SRC Family Tyrosyl Kinase LYN Triggers a
Conformational Change in the Catalytic Region of Human
cAMP-specific Phosphodiesterase HSPDE4A4B
CONSEQUENCES FOR ROLIPRAM INHIBITION*
Ian
McPhee
,
Stephen J.
Yarwood
,
Grant
Scotland§,
Elaine
Huston,
Matthew B.
Beard,
Annette H.
Ross,
Emma S.
Houslay, and
Miles D.
Houslay¶
From the Division of Biochemistry & Molecular Biology, IBLS,
Davidson Building, University of Glasgow,
Glasgow G12 8QQ, Scotland, United Kingdom
 |
ABSTRACT |
The cAMP-specific phosphodiesterase (PDE)
HSPDE 4A4B(pde46) selectively bound SH3 domains of SRC family
tyrosyl kinases. Such an interaction profoundly changed the inhibition
of PDE4 activity caused by the PDE4-selective inhibitor rolipram and
mimicked the enhanced rolipram inhibition seen for particulate,
compared with cytosolic pde46 expressed in COS7 cells. Particulate
pde46 co-localized with LYN kinase in COS7 cells. The unique N-terminal
and LR2 regions of pde46 contained the sites for SH3 binding. Altered
rolipram inhibition was triggered by SH3 domain interaction with the
LR2 region. Purified LYN SH3 and human PDE4A LR2 could be
co-immunoprecipitated, indicating a direct interaction. Protein kinase
A-phosphorylated pde46 remained able to bind LYN SH3. pde46 was found
to be associated with SRC kinase in the cytosol of COS1 cells, leading
to aberrant kinetics of rolipram inhibition. It is suggested that pde46
may be associated with SRC family tyrosyl kinases in intact cells and
that the ensuing SH3 domain interaction with the LR2 region of pde46
alters the conformation of the PDE catalytic unit, as detected by
altered rolipram inhibition. Interaction between pde46 and SRC family
tyrosyl kinases highlights a potentially novel regulatory system and
point of signaling system cross-talk.
 |
INTRODUCTION |
Although it has long been appreciated that cAMP plays a pivotal
role in controlling a wide range of cellular processes, the complexity
of the signaling system responsible for the generation, detection, and
degradation of this second messenger has only recently become apparent.
Thus nine forms of adenylyl cyclase able to generate cAMP, and around
30 forms of cyclic nucleotide phosphodiesterase (PDE)1 isoenzymes able to
degrade cAMP, have been identified together with multiple forms of
protein kinase A (PKA) and a large family of PKA-anchoring proteins
(1-7). A number of these species have been shown to exhibit specific
intracellular distributions. For example, the localization of
particular adenylyl cyclase isoenzymes to distinct regions of the
plasma membrane in polar cells (8), the targeting of PDE4 isoenzymes
via their N-terminal alternatively spliced regions (3, 9-14), and the
binding of PKA isoenzymes to anchor proteins have all been noted (1,
4). These arrangements demonstrate a propensity to organize the
components of the cAMP signal transduction system within defined
regions of the three-dimensional matrix of the cell interior. This,
undoubtedly, provides the molecular basis of the compartmentalization
of cAMP signaling that has been noted in a number of different cell
types (1, 2, 4). That specific adenylyl cyclase and PDE isoenzymes can
be regulated through the action of a variety of intracellular signaling
systems suggests that cAMP signaling may be regulated in distinct
fashions in different cells (2).
The cAMP-specific phosphodiesterase, PDE4 enzyme family is encoded by
four genes which each produce a series of isoenzymes through
alternative mRNA splicing (3, 6, 7). Selective inhibitors of these
enzymes are currently being developed as anti-inflammatory agents that
appear likely to be of potential therapeutic use in a variety of
disease states including asthma, rheumatoid arthritis, and AIDS
(15-18). Each PDE4 isoenzyme has a unique N-terminal region which, in
the case of the so-called "long" isoenzyme, are connected to the
catalytic domain by two regions that provide unique signatures of this
enzyme family. These are the Upstream Conserved
Regions, UCR1 and UCR2 (19). One feature that distinguishes
isoenzymes of each PDE4 class is the nature of their two
Linker Regions (3) namely LR1, which connects
UCR1 to UCR2, and LR2, which connects UCR2 to the catalytic domain
(3).
There is a growing realization that proteins involved in intracellular
signaling systems can be recruited and organized within distinct
intracellular domains (4). SH3 domains, which are found in various
families of proteins including adapter and cytoskeletal proteins and
signal transducing proteins such as SRC family tyrosyl kinases, can
serve such a function (20, 21). They are distinct, self-folding,
globular units of ~60 residues that confer protein-protein interaction by binding proline-rich regions on acceptor proteins. Interactions involving SH3 domains allow the assembly of functionally active complexes that serve to control conformational switches in a
number of key regulatory pathways (20).
We have shown (12) that the N-terminal region of the long human
PDE4A isoenzyme pde46 appears to be responsible, at least in part, for
its intracellular targeting in COS7 cells. Such membrane association
was accompanied (12) by a profound increase in the sensitivity of the
particulate form of this enzyme to inhibition by the archetypal
PDE4-selective inhibitor rolipram. Additionally, this interaction
resulted in a striking change in the kinetics of enzyme inhibition by
rolipram, implying that particulate association had triggered a
conformational change in this enzyme. Here we identify a distinct
proline- and arginine-rich stretch of sequence located within the LR2
region of pde46 which confers SH3 domain binding and triggers a
conformational change in the catalytic unit of this
enzyme.
 |
EXPERIMENTAL PROCEDURES |
Materials--
Restriction enzymes, Dulbecco's modified
Eagle's medium, and fetal calf serum were from Life Technologies, Inc.
(Paisley, UK). Tris, Hepes, DEAE-dextran (Mr
500,000), cytochalasin B, benzamidine hydrochloride,
phenylmethylsulfonyl fluoride, aprotinin, pepstatin A, antipain, EDTA,
EGTA, cAMP, cGMP, Dowex 1-X8-400 (chloride form, 200-400 mesh),
3-isobutyl 1-methylxanthine, snake venom (Ophiophagus
hannah), phosphate-buffered saline,
isopropylthio-
-D-galactoside, ampicillin, glutathione,
goat anti-rabbit IgG, FITC-conjugated goat anti-mouse and
FITC-conjugated anti-rabbit IgG, and bovine brain calmodulin were from
Sigma (Poole, UK). Nuserum was from Collaborative Biomedical Products
(UK). Dulbecco's modified Eagle's medium was from Life Technologies
Inc. (Paisley, Scotland). [3H]cAMP and
[3H]cGMP were from Amersham Pharmacia Biotech (UK).
Leupeptin was from Peptide Research Foundation (Scientific Marketing
Associates, London, UK). Dithiothreitol, Triton X-100, and lysozyme
were from Boehringer Mannheim (Lewes, UK). Triethanolamine was from BDH (Glasgow, UK). Glycerol was from Fisons (Leicestershire, UK). Bradford
reagent was from Bio-Rad (Hertfordshire, UK). Dimethyl sulfoxide was
from Koch-Light Ltd. (Haverhill, UK). Rolipram was a kind gift from
Schering Aktiengesellschaft, Berlin, Germany. RP73401 was a kind gift
from Dr. J. Souness, Rhone-Poulenc-Rorer, Dagenham, UK. SB207499
was a kind gift from Dr. Ted Torphy, SKB, Philadelphia. mAbs specific
for both LYN and SRC were from Transduction Laboratories (Lexington,
KY). A polyclonal antibody specific for LYN was from Santa Cruz
Biotechnology. Alexa 594-conjugated goat anti-mouse IgG was from
Molecular Probes.
Construction of
a-h6.1 and
b-h6.1 Mutants--
The
a
and
b regions deleted here in the N-terminally truncated PDE4A form
h6.1 (22) are shown schematically in Fig. 1. Both constructs were made
using PCR-based site-directed mutagenesis involving two rounds of PCR
during which the 5' region of h6.1 (22) containing the deletion was
synthesized. Plasmid pSVsport-h6.1 (12, 22, 23) was used as a template
during the first round of PCR. The primer sequences employed
were as follows: ESH1, AGCAGGGATCCACCATGTGCCCGTTCCCAG; ESH2a,
GTGTGGTACTTGCTGTTTTTCTCGTTCC; ESH2b, GGGCGGGGGCGGTTGCTGTTTTTCTCGTTCC; ESH3a, GAAAAACAGCAAGTACCACACTTACAGC; ESH3b,
GAAAAACAGCAACCGCCCCCGCCCCCTG; and ESH4, TGGTGATTCTCGAGCACCGAC.
PCR was first done using primer ESH1 with either primer ESH2a or
ESH2b and primer ESH4 with either primer ESH3a or ESH3b. Fragments were
then electrophoresed on a 1.5% agarose gel and excised. In a second
PCR, in addition to primers ESH1 and ESH4, a small piece of gel
(approximately 2 mm3) containing the PCR product of primers
ESH1 + ESH2a was mixed with a piece of gel containing the PCR product
of primers ESH3a + ESH4 in order to generate the
a-h6.1 construct.
In a similar fashion, the PCR product of primers ESH1 + ESH2b was mixed
with PCR product of ESH4 + ESH3b to make the
b-h6.1 construct.
During the second PCR, after denaturation at 94 °C for 1 min, the
annealing temperature was dropped to 42 °C for 1 min to allow the
complementary ends of the first round PCR products to anneal so that a
hybrid product containing the desired deletion was created upon raising the temperature to 72 °C for 1.5 min. This product was then
subjected to a further PCR using primers ESH1 and ESH4. After
purification on an agarose gel the mutated 5' regions were then
inserted into to pSVsport-h6.1 using XhoI (in h6.1 sequence)
and BamHI (in the pSVsport multiple cloning site and in
primer ESH1 sequence) restriction sites, replacing the unmodified
region. The sequences of the resultant constructs were then confirmed.
Generation of the
b-pde46 Mutant--
The deletion
b (Fig.
1), encompassing amino acids 313-320 inclusive, of HSPDE4A4B (pde46)
(19) was generated by site-directed mutagenesis using the
QuickChangeTM Mutagenesis system (Stratagene Ltd., Cambridge, UK)
according to the manufacturer's instructions. This employed the
plasmid pSV.SPORT-h46 (12) together with the complementary
oligonucleotide primers GSdb1, 5'-CGAGAAAAACAGCAACCGCCCCCG-3' (sense)
and GSdb2, 5'-CGGGGGCGGTTGCTGTTTTTCTCG-3' (antisense) in a PCR
reaction. Upon completion, the reaction mix was treated with the
restriction enzyme DpnI, and digested samples were
transformed into competent Escherichia coli strain XL1-Blue.
This generated the plasmid pSV.hPDE46-
b. Confirmation of the
mutation was obtained by sequencing of miniprep DNA.
Generation of a GST Fusion Protein of a VSV Epitope-tagged Form
of the Human LR2 Region--
PCR was used to generate the LR2 region
(3) (Fig. 1) of pde46 with a C-terminal VSV epitope tag using
the synthetic oligonucleotide primers GS-h46-LR2
5'-GCGGGATCCATGCCATCACCCACG-3' (sense) and GS-h46-LR2
5'-TGCTCTAGATTACTTTCCCAGCCTGTTCATCTCTATATCGGTGTACTGTAAGTGTGGTAC-3' (antisense) and pde46 as template DNA. The PCR fragment generated was treated with BamHI and XbaI, and the digested
fragment was purified before ligation into the
BamHI/XbaI sites of the plasmid pcDNA3,
yielding the plasmid pcDNA-LR2-VSV. This was used as a template for
PCR with the following oligonucleotide primers: h46 pGEX 5',
5'-CGCGGATCCCATCACCCACG-3', and h46 pGEX 3',
5'-CGGCTCGAGTTACTTTCCCAGCC-3'. The resultant PCR fragment was
digested with BamHI and XhoI; the fragment was
gel-purified and ligated into BamHI, XhoI cut
pGEX-5X-1 (Amersham Pharmacia Biotech) to form an in-frame fusion with
the GST gene. The resultant plasmid was designated pGEX-LR2-VSV.
Sequences of all constructs were confirmed.
Preparation and Generation of SH3 Domain Fusion
Proteins--
GST fusion proteins of the various SH3 domains employed
in this study were generated as described previously by us (24) with
the exception of those of c-Abl (kind gift from Dr. D. Baltimore, MIT,
Cambridge, MA) and c-Crk (kind gift from Dr. S. Fischer, INSERM, Paris,
France). The procedures used to grow transformed E. coli and
then to induce, isolate, and purify various GST fusion proteins were
done as described in detail by us before (24).
Pull-down Assays with GST Fusion Proteins--
This was
performed using a modification of a procedure described previously by
us (24). Volumes of slurry containing 400 µg of fusion protein
immobilized on glutathione-agarose were pelleted, and the supernatants
were discarded. Within each assay, volumes taken were equalized with
washed beads. The pellets were resuspended in 100 µg of crude cytosol
of COS7 cells transiently transfected to express the PDE4A form,
diluted to a final volume of 200 µl in KHEM buffer (50 mM
KCl, 50 mM HEPES-KOH, pH 7.2, l0 mM EGTA, 1.92 mM MgCl2) containing 1 mM
dithiothreitol and protease inhibitor mixture. The immobilized fusion
protein and cytosol were incubated together for 10-min
"end-over-end" at 4 °C. The beads were then collected by
centrifugation for 5 s at high speed in a benchtop centrifuge, and
the supernatant was retained as the unbound fraction. The beads were
held on ice and washed three times with 400 µl of KHEM containing 1 mM dithiothreitol and protease inhibitor mixture over a
15-min period. These washes were pooled along with the unbound fraction
and aliquots taken for PDE assay and Western blotting. Bound PDE was
eluted from the beads by incubating three times in 100 µl of elution
buffer (10 mM glutathione, 50 mM Tris-HCl, pH
8.0), for 10 min at 4 °C. The eluted fractions were pooled and
aliquots taken for PDE assay and Western blotting.
Binding of PDE4 Species to SH3 Fusion Proteins Prior to Kinetic
Analyses--
COS7 cells were transfected with either native or the
indicated mutant forms of pde46 and h6.1. They were lysed in KHEM
buffer, and the high speed supernatant fraction was divided into
100-µl aliquots, each of which contained typically 180-200 µg of
protein. In these experiments each 100-µl aliquot of the COS7 cell
high speed supernatant fraction was incubated with 200 µg of the
indicated SH3 domain-GST fusion protein that had been purified from
bacterial extracts and immobilized on glutathione-agarose. The
immobilized fusion protein and indicated PDE form were incubated
end-over-end at 4 °C for 10 min. The beads were washed 3 times in
KHEM buffer over a 15-min period and eluted by 3× 100-µl washes in
ice-cold elution buffer (see above). The eluted fractions were then
pooled and taken for immediate analysis of PDE activity. In some
instances an additional 200 µg of SH3 domain GST fusion protein was
added to the eluted fraction. Over the time of the PDE assay >95% of each of the PDE forms remained bound to the SH3 (LYN/FYN/SRC) fusion
proteins. No binding occurred to GST alone, and GST addition to PDE
assays did not elicit any change in rolipram inhibition of the PDEs
analyzed herein.
Transfection and Subcellular Fractionation of COS7
Cells--
Cells were grown and transfected as described before by us
in some detail (12). Disruption of COS7 cells was done as described previously by us in some detail (9, 12). This procedure routinely yielded (14, 25) a P1 pellet (1,000 × gav
for 5 min) and P2 pellet (60 min at 100,000 × gav) as well as a high speed supernatant (sn).
The homogenization procedure was complete in that there was no
detectable latent lactate dehydrogenase activity present in either of
the pellet fractions, indicating the absence of cytosolic proteins and
>98% disruption. The high speed supernatant, P1 and P2 fractions,
contained 34 ± 3, 25 ± 2, and 41 ± 2% of the total protein, respectively (means ± S.D.; n = 8 experiments).
SDS-PAGE and Western Blotting--
Samples of cellular fractions
(2-50 mg of protein) were boiled for 5 min after being resuspended in
Laemmli (26) buffer and were separated on 10% acrylamide gels. Gels
were routinely run at 40 mA/gel for 4-5 h with cooling. Transfected
PDE was detected by Western blotting with human PDE4A-specific antisera
(12) following transfer to nitrocellulose. Immunoreactive bands were identified by using anti-rabbit peroxidase-linked IgG and the Amersham
Pharmacia Biotech ECL detection system as described before by us
(12).
Immunoprecipitation of Fusion Proteins--
The GST fusion
protein GST-LR2-VSV (25 µg) was diluted to 500 µl in
immunoprecipitation buffer (50 mM Tris-HCl, pH 8.0, 100 mM NaCl, 1 mM EDTA, 0.02% Triton X-100)
containing an equal amount of GST or LYN-SH3 GST fusion protein. Fusion
protein mixtures were incubated for 1 h at 4 °C with anti-VSV
antiserum (1:50 v/v) or mouse IgG (1:50 v/v) after which protein
A-agarose beads (1:50 v/v) were added. After incubation for an
additional hour, immune complexes were pelleted by centrifugation at
14,000 × gav and washed three times in
immunoprecipitation buffer. Following washing, immunoprecipitates were
subjected to SDS-PAGE and Western blotting with anti-GST antiserum
(1:5,000 v/v). Labeled bands were identified by using anti-rabbit
peroxidase-linked IgG (1:10,000 v/v) and visualized with the Amersham
Pharmacia Biotech ECL protocol.
Co-immunoprecipitation of pde46 with LYN--
COS7 and COS1
cells were transfected with 10 µg of plasmid pcDNA3 containing a
cDNA of full-length pde46 by the DEAE-Dextran transfection method.
Seventy two hours post-transfection cells were harvested in RIPA buffer
(55 mM Tris-HCl, pH 7.4, 132 mM NaCl, 22 mM sodium fluoride, 11 mM sodium pyrophosphate,
1.1 mM EDTA, 5.5 mM EGTA) and then lysed with 8 strokes of a 261/2-gauge needle attached to a disposable
syringe. Unbroken cells were removed by centrifugation at 1,000 × gav for 5 min. The resulting supernatant was
centrifuged at 100,000 × gav for 45 min at
4 °C to yield a high speed supernatant fraction (S2) and a high
speed pellet fraction (P2). 500 µg of S2 was mixed with 30 µl of
pre-equilibrated protein A-agarose and incubated for 30 min at 4 °C.
Beads were removed by centrifugation at 2,000 × gav for 5 min, and the cleared lysates were
incubated with 4 µg/ml anti-LYN antisera in the presence of protein
A-agarose beads for 3 h at 4 °C. Beads were collected by
centrifugation (2,000 × gav for 5 min) and
washed three times with lysis buffer. 0.2 mg (protein) of the high
speed (P2) pellet fraction was treated with 500 µl of lysis buffer
containing 0.5% Nonidet P-40. They were then incubated for 30 min at
4 °C and then centrifuged at 100,000 × gav for 45 min at 4 °C. The resulting supernatant was mixed with 30 µl of pre-equilibrated protein
A-agarose and incubated for 30 min at 4 °C. Beads were removed by
centrifugation at 2,000 × gav for 5 min,
and the cleared supernatant was incubated with 4 µg/ml anti-LYN
antiserum in the presence of protein A-agarose beads for 3 h at
4 °C. Beads were collected by centrifugation (2,000 ×gav for 5 min) and washed three times with
lysis buffer. Co-immunoprecipitation of pde46 with LYN was analyzed by
immunoblotting with anti-human PDE4A antiserum (12) and a LYN mAb.
LYN SH3 Binding to Protein Kinase A-phosphorylated
pde46--
The cytosolic fraction of pde46 from transfected COS7
cells, containing 8 pmol/min/µl enzyme, and the equivalent amount of cytosol (50 µg) from mock-transfected cells were each made up to 200 µl in PKA assay buffer (0.2 mM ATP, 0.1 mM
[32P]ATP, 10 mM MgCl2, 30 mM
-mercaptoethanol, 10% glycerol, 100 mM
Tris-HCl, pH 7.5) and incubated in the presence of 2 units of PKA for
30 min at room temperature. The sample was then divided into two equal
aliquots, one of which was incubated in the presence of a LYN SH3-GST
(100 µg) fusion protein, and the other was incubated in the presence
of GST (100 µg) alone. After a 30-min incubation on ice, 50 µl of
glutathione beads were added to each aliquot and incubated end-over-end
for 30 min at 4 °C. The beads were then washed 3 times in 0.5 ml of
phosphate-buffered saline containing protease inhibitors to remove any
unbound proteins before being washed 3 times (5 s centrifugation at
10,000 × gav) in 100 µl of elution
buffer (5 mM glutathione, 50 mM Tris-HCl, pH 8)
to release the GST, the LYN SH3-GST fusion protein, and any proteins that may have bound to them. The eluates were then incubated for 30 min
on ice with an antiserum specific for the unique C terminus of human
PDE4A (12). Antibody-antigen complexes were then precipitated using
protein A beads and washed 3 times in 0.5 ml of phosphate-buffered saline. The resultant pellets were boiled in Laemmli sample buffer (26)
and applied to the lanes of an 8% polyacrylamide gel. After running
the gel, the proteins were transferred to nitro-cellulose, and
radioactive bands were detected using x-ray film and PhosphorImager plates.
Binding of h6.1 to P1 Pellet Fraction and Competition with
GST-LR2-VSV--
Using procedures described by us before (27, 28) h6.1
was synthesized in vitro using the coupled, single tube STP3
T7 transcription/translation system (Novagen) according to the
manufacturer's instructions. Briefly, 1 µg/reaction of pSVsport-h6.1
DNA template was added to STP3 Transcription Mix (10 µl total
reaction volume) and incubated at 30 °C for 15 min. Following the
transcription step, 30 µl of STP3 Translation Mix and 40 µCi of
[35S]methionine was added to the reaction tube. The
reaction volume was made to 50 µl with nuclease-free water, and then
the tube was incubated at 30 °C for 60 min. This was used in binding
experiments as described before by us (27, 28). Here, 5 µl of
in vitro synthesized h6.1 was incubated for 10 min at
4 °C with 10 µg of P1 pellet fraction, and the indicated amount of
either GST-LR2-VSV fusion protein or GST (control) in a total volume of
500 µl of binding buffer (55 mM Tris-HCl, pH 7.4, 132 mM NaCl, 22 mM sodium fluoride, 11 mM sodium pyrophosphate, 1.1 mM EDTA, 5.5 mM EGTA) containing protease inhibitor mixture. Pellets
were then collected by centrifugation (2,000 × gav, 5 min, 4 °C), washed 3 times with binding buffer, subjected to SDS-PAGE, and Western-blotted. Radioactive bands were identified by PhosphorImager analysis.
Immunofluorescence Analyses--
48 h after transfection cells
were transferred onto coverslips (18 × 18 mm) at about 40%
confluency. They were grown for a further 24 h and then fixed for
30 min in 4% paraformaldehyde in Tris-buffered saline (TBS). Cells
were permeabilized with 3 changes of 0.2% Triton in TBS for 15 min,
and, following four 5-min blocking incubations with 20% goat serum and
4% bovine serum albumin, were labeled for 2 h with polyclonal
antibodies raised against specific peptide sequences of the C-terminal
region of PDE 4A4B (12) or RNPDE4A5 (10, 11). Alternatively a
monoclonal anti-PDE4A antibody, also raised against the C-terminal
region of PDE4A4B, was used. Labeling was detected using a tetramethyl rhodamine isothiocyanate-conjugated goat anti-rabbit IgG or Alexa 594-conjugated goat anti-mouse IgG for 1 h. Co-staining of cells was achieved using a monoclonal mouse anti-LYN antibody at a dilution of 1:100 and a polyclonal antibody raised to a specific peptide sequence of the Gs
subunit of GTP-binding protein.
Localization of proteins was visualized using FITC-conjugated goat
anti-mouse or anti-rabbit IgG. All incubations were performed at room
temperature. Cells were visualized using a laser-scanning confocal
microscope using an Axiovert 100 microscope with a X63/1.4NA plan
apochromat lens, as described previously (12).
PDE Assay--
cAMP PDE activity was assessed at 30 °C by a
modification of the two-step procedure of Thompson and Appleman (29) as
described previously by us (30). Initial rates were taken from linear time courses of activity. Mock transfections, with vector only, as
described before (12, 13), did not alter the endogenous COS cell PDE
activity. As a routine we subtracted the residual COS cell PDE
activities done in parallel experiments from those activities found in
PDE-transfected cells. Protein was measured by the method of Bradford
(31) using bovine serum albumin as a standard. Dose-effect inhibitor
analyses were done with 1 µM cAMP as a substrate. Racemic
rolipram was dissolved in 100% Me2SO as a 10 mM stock and diluted in 20 mM Tris-HCl, pH 7.4, 10 mM MgCl2 buffer for dilution in the assay.
Residual Me2SO did not affect PDE activity over the ranges
used here. Inhibitor studies were analyzed using KaleidaGraph (Synergy
Software, Reading, PA). To define Km values, data
from PDE assays were done over a range of cAMP substrate concentrations
and then analyzed by fitting to the hyperbolic form of the
Michaelis-Menten equation using an iterative least squares procedure
(Ultrafit; with Marquardt algorithm, robust fit, experimental errors
supplied; Biosoft, Cambridge, UK) (12, 25).
 |
RESULTS AND DISCUSSION |
Through alternative mRNA splicing each of the four
PDE4 genes generates a number of isoenzymes that have unique
N-terminal regions (3, 6, 7, 19, 32). Such splicing, however, occurs at
two distinct splice junctions that generate so-called "short" and
"long" PDE4 isoenzymes. The long forms are characterized by the
presence of two regions that provide a unique signature for members of
the PDE4 multigene family (19), namely the so-called UCR1 and UCR2
regions (Fig. 1). These are located
between the unique N-terminal region of each isoenzyme and their
catalytic unit. The region that connects UCR1 and UCR2 has been called
(3) linker region 1 (LR1) and that region which connects UCR2 to the catalytic region has been called linker region 2 (LR2). These linker
regions vary dramatically in sequence between the different PDE4
families, with the most profound differences seen for the LR2 region
(3). In contrast to the long PDE4 isoenzymes, however, the short
isoenzymes lack a UCR1 region.

View larger version (24K):
[in this window]
[in a new window]
|
Fig. 1.
Domain structure of PDE4A. This
schematic shows the putative domain structure of pde46 (HSPDE4A4B) (19)
and the N-terminal truncated species h6.1 (22). Identified features are
the unique N-terminal alternatively spliced region of pde46 and which
contains three putative SH3 binding motifs starting at
Pro3, Pro37, and Pro61; the
upstream conserved regions UCR1 and UCR2 which are unique to PDE4
family members and start at Ser140 and Gln228,
respectively; the linker region LR1, which connects UCR1 and UCR2 and
starts at Phe195; linker region LR2 which starts at
Met305 and connects UCR2 to the putative catalytic unit
which starts at Met332; two other putative SH3 binding
regions, at Pro684 and Pro819, found toward the
C-terminal region of the protein which start at Glu701.
h6.1 has 9 non-native amino acids at its N terminus. The form of the
a and b mutants, which have deletions within the LR2 region, is
shown together with a comparison of the sequences of the human and rat
LR2 regions so as to indicate the absence of the PRPRP region in the
rat LR2 and the differences in the human PPPPP region with that seen. A
putative SH3 binding motif of the form RXXPXXP
can be identified in the human, but not the rat, LR2 region as
R315PRPSQP.
|
|
Interactions between SH3 domains and putative target proteins have been
investigated in a number of laboratories by using specific SH3 domains
expressed as in-frame fusion proteins with GST (20, 21). We have used
such an approach to demonstrate (24) that the long rat PDE4A isoenzyme,
rpde6, can interact with the SH3 domains from a variety of proteins,
showing an apparent preference for interaction with the SH3 domains of
SRC family tyrosyl kinases. This interaction was mediated exclusively
by the extreme N-terminal alternatively spliced region of 112 residues, as both a different long rat PDE4 isoenzyme (rpde39) and an engineered rat PDE4A species (Met26-RD1), which lacks all N-terminal
sequence up from UCR2, failed to bind to the SH3 domains of SRC family
tyrosyl kinases. Within the N-terminal alternatively spliced region of
rpde6 are three motifs of the form that might be predicted to interact
with SH3 domain-containing proteins, including those of SRC family
tyrosyl kinases. These consist of a "core" PXXP motif
together with a closely associated arginine residue, yielding a motif
of the general form either PXXPXXR or
RXXPXXP. Three similar motifs are found (Fig. 1)
in the N-terminal region of pde46, the human homologue of rpde6. We
show here (Table I and Fig.
2) that pde46 was able to bind to GST
fusion proteins expressing the SH3 domains of the tyrosyl kinases LYN
and SRC. There is an apparent specificity in this interaction. Relative
to the binding of pde46 to SRC SH3 (set at unity) both LYN SH3
(4.9 ± 0.5 times as effective) and FYN SH3 (4.4 ± 0.3 times) bound more effectively, whereas ABL SH3 bound similarly
(0.7 ± 0.2 times), and CRK SH3 (0.05 ± 0.03 times) and LCK
SH3 (0.04 ± 0.02 times) showed little if any interaction (data
are means ± S.D. for n = 3 separate experiments;
analyses done by Western blotting of pull-down assays as in Fig. 2; 100 µg of COS cell lysate used plus 2× 200 µg of fusion proteins as described in detail under "Experimental Procedures".
View this table:
[in this window]
[in a new window]
|
Table I
Association of pde46 and h6.1 with GST fusion proteins of SH3
domains
Pull-down assays were performed, as described under "Experimental
Procedures," to determine the association of full-length (pde46) and
N-terminally truncated (h6.1) human PDE4A forms with the SH3 domains of
LYN and SRC expressed as GST fusion proteins. The association of PDE4A
species was detected either by assaying PDE activity (1 µM cAMP as substrate) or by immunoblotting with a
PDE4A-specific antiserum raised against a C-terminal peptide. Binding
is expressed as a percentage of the total activity/immunoreactivity
present in the incubation mixture prior to pull down of the GST fusion
proteins on glutathione-agarose. Native GST was used as a control.
pde46 immunoreactivity was quantified as described in detail before by
us (12) where a series of dilutions of pde46-transfected COS-7 cell
extracts (5-100 µg of protein), as well as bound and unbound
fractions, were analyzed by Western blotting with densitometric
determinations done over linear ranges. In these experiments 200 µg
protein of COS-7 cell lysate was used together with 2× 200 µg of the
various GST fusion proteins as described under "Experimental
Procedures." These data show means ± S.D. of three separate
experiments.
|
|

View larger version (30K):
[in this window]
[in a new window]
|
Fig. 2.
Binding of pde46 and h6.1 to a LYN SH3 GST
fusion protein. Panels A-C show immunoblots of HSPDE4A
species analyzed using an HSPDE4A-specific antisera. Data are typical
of "pull-down" experiments done on three separate occasions and
performed as described under "Experimental Procedures" using 500 µg protein of cell extracts and 20 µg protein of the various fusion
proteins. Panel A shows the pellet
(tracks a and c) and supernatant
(tracks b and d) fractions for an
experiment to assess the association of PDE46 with either GST itself
(tracks a and b) or LYN SH3-GST
(tracks c and d). Panel B
shows the pellet (tracks b, d,
f, and h) and supernatant (tracks
a, c, e, and g) fractions
for experiments to determine the association of either h6.1
(tracks e f, inclusive) or a-h6.1
(tracks a d) inclusive with either GST
(tracks c, d, g, and
h) or LYN SH3-GST (tracks a,
b, e, and f). Panel C shows
the pellet (tracks a and d) and
supernatant (tracks b and c) fractions
in experiments to determine the association of b-h6.1 with either
GST (tracks a and b) or LYN SH3-GST
(tracks c and d). Panel D
demonstrates PhosphorImager data showing that immunoprecipitated pde46
becomes labeled through [32P]ATP phosphorylation in the
presence of protein kinase A. Panel E shows
PhosphorImager data indicating that LYN SH3 is able to bind labeled
pde46 after phosphorylation by PKA and [32P]ATP. The
identity of this labeled band was confirmed using immunoblotting with
PDE4A-specific antisera. Panel F shows that LYN SH3-GST (4 µg of protein) was able to pull down all of the immunoreactive pde46
in a cytosol/high speed supernatant fraction from forskolin-treated
COS7 cells (100 µg of protein).
|
|
Previously, we have shown (24) that an N-terminal truncated rodent
PDE4A form called Met26-RD1, was unable to bind to the SH3
domain of SRC. In marked contrast to this, however, we noted in this
study that a cognate human PDE4A N-terminal truncate, exemplified by
the form h6.1 (Fig. 1), was still able to bind to the SH3 domains of
LYN and SRC (Table I and Fig. 2). The PDE4A homologues, pde46 (human)
and rpde6 (rat), are extremely similar proteins, particularly regarding their alternatively spliced N-terminal regions and core catalytic unit.
However, there are certain differences in their primary structure (3,
19) which appear to be highly localized. The most obvious differences
relate to insertions in pde46 found both toward its C terminus and
within its LR2 region (3). Indeed, the sequence of the exon 8-encoded
LR2 region appears to be hypervariable not only between the various
PDE4 families but also between cognate PDE4A isoenzymes from different
mammals (3, 32). This latter point is clearly evident upon comparison
of the sequence of the LR2 region from human and rat PDE4A species
(Fig. 1 and Ref. 32). Inspection of this region shows that the human,
but not the rat, LR2 region (Fig. 1) is characterized by the presence
of an RXXPXXP motif contained within a highly
proline- and arginine-rich stretch of sequence. As such, the human
PDE4A LR2 region is of a form that might be expected to be able to
interact with SH3 domains. This difference between the rat and human
LR2 regions (51) might then offer an explanation as to why the human
truncate, h6.1 (Fig. 2), but not the rat truncate Met26-D1
(24), was able to bind to SH3 domains of SRC and LYN. In order to
evaluate this, we made two h6.1 mutants. In
a-h6.1 the entire
proline- and arginine-rich region found within human PDE4A-LR2 was
deleted (Fig. 1). In the
b-deletion mutant a stretch of sequence found uniquely within the human, but not the rat, PDE4A LR2 region was
removed (Fig. 1). This region contained the "PRPRP" repeat sequence
whose deletion served also to destroy the RXXPXXP
motif found within human LR2. Expressed transiently in COS7 cells, both of these deletion mutants were found as active species exhibiting Km values for cAMP of 2.7 ± 0.4 and 2.3 ± 0.5 µM for the
a-h6.1 and
b-h6.1 mutants,
respectively (mean ± S.D.; n = 3). Their
activities were inhibited by the PDE4-selective inhibitor rolipram in a
dose-dependent fashion, with IC50 values that
were similarly both to each other and to h6.1 (Table
II). However, neither of these deletion
mutants was able to bind to the SH3 domains of either LYN (Fig. 2) or
SRC (data not shown), and each was found exclusively in the high speed
supernatant (cytosol) fraction of these cells (Table
III). In addition to the putative SH3
binding motifs found in the extreme N-terminal region of pde46 and
within the LR2 region, two other possible SH3 binding motifs are
evident toward the C terminus of the protein (Fig. 1). However, we
believe it unlikely that these are capable of interacting with the SH3
domains of LYN, FYN, and SRC because similar motifs are evident in the
rodent PDE4A isoenzyme, rpde39, and the N-terminal PDE4A truncate,
Met26-RD1, both of which failed to interact with SH3
domains (24). Consistent with this, we show here (Fig. 2) that both the
human
a-h6.1 and
b-h6.1 mutants, each of which exhibits the
C-terminal PXXPXXR motifs (Fig. 1), failed to
bind to SH3 domains. We thus propose that the sites of interaction of
SRC family tyrosyl kinase SH3 domains with PDE4A species are limited to
the N-terminal alternatively spliced regions found in common in the
human and rat homologues, pde46 and rpde6, together with an additional
site found uniquely in the LR2 region of the human PDE4A isoenzyme,
pde46.
View this table:
[in this window]
[in a new window]
|
Table II
Inhibition of PDE4A species by rolipram
Data show IC50 values given as means ± S.D. for
n = 3 separate experiments in each instance. Values are
expressed in µM rolipram and were obtained from
dose-effect studies performed as described under "Experimental
Procedures." Assays were done with 1 µM cAMP as
substrate. No differences in the Km values using
cAMP as substrate were noted for the various species bound to SH3
fusion proteins compared with those values found for the corresponding
enzyme expressed in the various subcellular fractions (<5% change;
n = 3). Similarly, the various mutants showed similar
Km cAMP values compared with the parent species. The
form of the Dixon plot is indicated as linear (L) or nonlinear (NL),
namely parabolic with, given in parentheses (n), the degree
of nonlinearity (cooperativity) as assessed by fitting Dixon plot data
to the equation y = mxn + C, where n
is equivalent to the Hill coefficient and is equal to unity for an
enzyme obeying simple Michaelian kinetics of inhibition. Data are given
for enzymes expressed in COS-7 unless stated otherwise. PDE activities
(nmol/min/mg protein) of enzymes are given in parentheses for the
source of enzyme assayed. In experiments utilizing complexes of PDE
enzymes and SH3 domains then, 200 µg of protein COS-7 cell lysate was
used together with 2× 200 µg of the various GST fusion proteins as
described under "Experimental Procedures."
|
|
View this table:
[in this window]
[in a new window]
|
Table III
Subcellular distribution of PDE4A species in transfected COS cells
COS cells were transfected, harvested, disrupted, and subjected to
differential centrifugation as described under "Experimental
Procedures" to give a low speed P1 pellet fraction, a high speed P2
pellet fraction, and a high speed supernatant (s/n) fraction. Data are
from three separate experiments. Distribution is given as a percentage
of the immunoreactive species found in each fraction using antisera
specific for either human or rat PDE4A isoenzymes. Unless stated
otherwise, COS-7 cells were used.
|
|
In order to define whether the LR2 region of human PDE4A would indeed
interact with an SRC family tyrosyl kinase SH3 domain, we generated a
VSV epitope-tagged version of LR2 as a GST fusion protein. This species
migrated as a single, 33-kDa species on SDS-PAGE (Fig.
3A; track h) when
detected using a polyclonal antibody specific for GST (12). The GST
fusion protein of LYN SH3 was similarly detected and migrated as a
single, 36-kDa species on SDS-PAGE (Fig. 3A, track
i). Using a mAb specific for VSV we were able to immunoprecipitate
the VSV epitope-tagged LR2-GST fusion protein (Fig. 3A,
track c) but not the GST fusion protein of LYN SH3 (Fig.
3A, track e). However, after mixing
these two chimeras together, we were then able to co-immunoprecipitate
them both, indicated by the doublet evident on SDS-PAGE (Fig.
3A, track g), using the VSV-specific mAb but not
by using a nonspecific mAb (Fig. 3A, track f).
Indeed, a nonspecific mAb was ineffective in causing
immunoprecipitation of either chimera added alone or in combination
(Fig. 3, tracks b, d, and
f). These experiments demonstrate that the proline- and
arginine-rich LR2 region that will be found within all human PDE4A
isoenzymes (32) can indeed interact with the LYN SH3 domain. Indeed, as
purified LYN SH3-GST and LR2-VSV-GST proteins were used in this study,
this indicates that SH3 domain interaction with the human PDE4A LR2
region was direct and did not involve any intermediary protein or any
post-translational modification.

View larger version (19K):
[in this window]
[in a new window]
|
Fig. 3.
Interaction of the LR2 region of HSPDE4A with
LYN SH3. Panel A shows pull-down assays were done as
described under "Experimental Procedures." An epitope (VSV)-tagged
version of LR2 was generated as a GST fusion protein and analyzed for
interaction with both GST and a LYN SH3-GST fusion protein. The
experiment shown is typical of one done on three separate occasions and
reflects an immunoblot probed using an antiserum specific for GST. GST
(track a), GST-LYN SH3 (track i), and GST-LR2-VSV
(track h) are shown to migrate as single immunoreactive
species on SDS-PAGE with molecular masses of 28, 36, and 33 kDa,
respectively. In some instances a VSV-specific mAb was used for
immunoprecipitation. Thus indicated in the row labeled, VSV ippt
mAb, the symbol + indicates the use of the specific anti-VSV mAB,
the symbol if no immunoprecipitation was performed, and the
letter c if a control mAb was employed. Probes of
immunoprecipitates showed that the use of nonspecific antibody failed
to immunoprecipitate either GST-LR2-VSV (track b) or GST-LYN
SH3 (track d) or a mixture of both of these proteins
(track f). Use of an anti-VSV mAb immunoprecipitated
GST-LR2-VSV (track c) but did not immunoprecipitate GST-LYN
SH3 (track e) when these species were alone exposed to this
antibody (labeled as +). However, using a mixture of GST-LR2
versus plus GST-LYN SH3 then anti-VSV antibody
immunoprecipitated both species (track g) as indicated by a
doublet detected using the anti-GST antibody. Panel B shows
the binding of [35S]methionine-labeled h6.1, generated in
a TNT-coupled transcription-translation system, to the P1 fraction of
COS7 cell membranes as detected by PhosphorImager analysis. No binding
to the P2 membrane fraction was detected (data not shown). Track
a demonstrates h6.1 binding when h6.1 was incubated alone with
membranes; track b indicates the abrogation of
binding when incubations were done with h6.1 in the presence of 100 nM of the human PDE4A-LR2 region expressed as a GST fusion
protein; and panel c reflects binding of h6.1 occurring with
incubation done in the presence of 100 nM GST. This is a
typical experiment of one done on two separate occasions. Details are
given under "Experimental Procedures."
|
|
We have previously maintained that h6.1 (12, 22), like the rodent
N-terminal truncate Met26-RD1 (9, 10), was an entirely
cytosolic species. However, in those studies we only analyzed the high
speed (P2) pellet and the supernatant fraction. Given the ability of
h6.1 to interact with SH3 domains, we have re-investigated the
intracellular localization of these two species in this study. This
analysis (Table III) served to confirm that h6.1 was located in the
cytosol and not in the P2 fraction. However, we were also able to show
(Table III) that ~23% of the total h6.1 immunoreactivity was
associated with the P1 particulate fraction. In marked contrast to this
the rat truncate, Met26-RD1 was exclusively located within
the high speed supernatant fraction (Table III). This difference in
association of h6.1 and Met26-RD1 with the P1 particulate
fraction may explain the previously reported differences in
intracellular distribution of these two species inferred from
immunofluorescence analyses done using laser scanning confocal
microscopy (10, 12). In these studies the immunofluorescence of
Met26-RD1 was evenly spread throughout the cell, indicative
of a solely cytosolic distribution (9), whereas h6.1 showed a
nonuniform distribution through the cell interior, with an increased
labeling associated with the perinuclear cytoskeleton (12). This would be consistent with the association of h6.1 with a nuclear/cytoskeletal P1 subcellular fraction in addition to the high speed
supernatant/cytosol fraction. In order to determine if association of
h6.1 with the P1 pellet fraction was attributable to its proline- and
arginine-rich LR2 region, we analyzed (Table III) the intracellular
distribution of the LR2 region deletion mutants,
a-h6.1 and
b-h6.1 (Fig. 1). Such mutants were, like Met26-RD1,
found exclusively in the high speed supernatant (cytosol) fraction
(Table III). This suggests that the association of h6.1 found with the
P1 particulate fraction involves an interaction between its LR2 region
and an SH3 domain-containing protein. Consistent with this we were able
to demonstrate (Fig. 3B) that the VSV-LR2-GST fusion protein
was able to prevent in vitro synthesized h6.1 from binding
to a P1 pellet isolated from untransfected COS7 cells. As a control we
were able to demonstrate that GST was ineffective in this regard (Fig.
3B). This provides further support to the notion that h6.1
associates with the P1 pellet fraction through an interaction involving
its LR2 domain.
Although an interaction involving the proline- and arginine-rich
sequences in LR2 may account for the association of h6.1 with the P1
fraction, it cannot fully account for the association of full-length
pde46 with the P1 fraction. For the
b-pde46 mutant, whose LR2 domain
has been modified to ablate binding to SH3 domains, was still found
associated, albeit at a reduced level, with the P1 fraction (Table
III). Similarly, the rodent PDE4A isoenzyme, rpde6, which lacks the
proline- and arginine-rich insert seen in the human LR2 region, was
also found associated with the P1 fraction (Table III). These data
suggest that the N-terminal portion of these long PDE4A isoenzymes is
also involved in the targeting of these isoenzymes to components found
within the P1 fraction.
Immunoblotting COS7 cells (Fig.
4A) with a mAb specific for
the SRC family tyrosyl kinase, LYN, identified two immunoreactive components of 56 ± 1 and 53 ± 2 kDa. These reflect the
sizes of the two known splice variants of LYN (33). Subcellular
fractionation studies showed that this kinase was located within both
the P1 and P2 particulate fractions of COS7 cells and was not found
expressed in the cytosol (Fig. 4A). We have previously shown
(12) that particulate pde46 could not be solubilized using either high
salt concentrations or the non-ionic detergent Triton X-100, indicating that it is likely to be associated with the cytoskeleton. Similarly, under identical conditions of either high [NaCl] or with Triton X-100
or a combination of both, we were unable to release LYN from
particulate fractions (Fig. 4B). This suggests that pde46 and LYN may both be similarly associated with the particulate fractions. However, using an RIPA/Nonidet P-40 extraction method, which
other investigators (see e.g. Ref. 34) have used to extract SRC family tyrosyl kinases from cells and determine associated proteins
through immunoprecipitation, then we were able to achieve the
solubilization of both pde46 and LYN. This allowed us to demonstrate that solubilized pde46 and LYN could be co-immunoprecipitated using an
anti-LYN antiserum (Fig. 5A),
whereas a nonspecific antiserum was ineffective (Fig. 5A).
The pde46 that was co-immunoprecipitated with LYN was catalytically
active. As noted for pde46 bound to LYN SH3 (see below), the activity
of LYN-bound pde46 was similar (96 ± 12%; mean ± S.D.;
n = 3) to that of pde46 found in the cytosol of
transfected COS7 cells (100%; 1 µM cAMP as substrate).
The amount of pde46 that could be co-immunoprecipitated with LYN was variable, being in the range of 32-54% (n = 3). This,
undoubtedly, reflects the fact that complexes are likely to be
disrupted by varying extents during the lysis, extraction, and
immunoprecipitation procedures. Nevertheless, this procedure clearly
identified an interaction occurring between these two proteins. In
contrast to this, however, we were unable to co-immunoprecipitate LYN
and pde46 from the high speed supernatant (cytosol fraction) of COS7 cells (Fig. 5A, left-hand panel).

View larger version (24K):
[in this window]
[in a new window]
|
Fig. 4.
Expression of LYN in COS7 cells.
Panel A shows an immunoblot using a mAb specific for LYN
probing the P1, P2, and high speed supernatant (s/n)
fractions of COS7 cells (25 µg of protein per lane). A doublet of 56 and 53 kDa was seen in both the P1 and P2 fractions, but no
immunoreactivity was observed in the cytosol fraction. Panel
B shows the P2 pellet fraction treated with either buffer, 2 M NaCl, 5% Triton X-100, or NaCl + Triton X-100, and then
the residual pellet (p) and supernatant (s) were
separated and immunoblotted for LYN (25 µg of protein per
lane).
|
|

View larger version (28K):
[in this window]
[in a new window]
|
Fig. 5.
Interaction of pde46 and LYN in COS7
cells. Panel A, the P2 pellet fraction (500 µg of
protein) from both COS7 and COS1 cells that had been transiently
transfected with a plasmid encoding pde46 was solubilized using RIPA
buffer and then subjected to immunoprecipitation using either an
anti-LYN polyclonal antiserum or a control antiserum. The
immunoprecipitate was then subjected to SDS-PAGE and immunoblotting. In
the upper panel immunoblots were developed using an
antiserum specific for PDE4A and in the lower panel a mAb
specific for LYN. Cytosol (500 µg of protein) from pde46-transfected
COS1 and COS7 cells (as indicated) was subjected to immunoprecipitation
using polyclonal antisera specific for either LYN or SRC as well as a
nonspecific antisera (control). Blots were then developed using an
antibody specific for PDE4A. Panel B, COS7 cells were
analyzed using a laser scanning confocal microscope. The upper set of
pictures relates to cells transfected to express pde46. A series of
0.25-µm optical sections were analyzed for the co-localization
studies. Here we show an optical section taken through the center of
the cell that has been probed with a PDE4A-specific antiserum (detected
with goat anti-rabbit IgG labeled with FITC; rhodamine red), and also
with a specific LYN mAb (detected with a goat anti-mouse IgG labeled
with FITC; fluorescein green). The pde46 "image" (pde46,
red) and LYN image (LYN, green) are given
together with a combined (superimposed) image (pde46 + LYN
combined) plus a combined image of another cell (pde46 + LYN
combined (2)). The pattern of immunofluorescence of both LYN and
pde46 in all optical sections (~30 at 0.25 nM) taken
through these cells was very similar and in each instance yielded a
uniform yellow image indicative of a high degree of co-localization
seen in three different transfection studies. Analyses were also done to compare the
distribution of pde46 with Gs and LYN with the rat short
form PDE4A, RD1. In the pde46 analysis with Gs a PDE4A
mAb was employed, and anti-mouse IgG was labeled with ALEXA594
(red) and used for its detection, whereas Gs
was probed with a specific rabbit polyclonal antibody with detection
using an anti-rabbit IgG labeled with FITC (green). In the
RD1 analysis with LYN, a PDE4A-specific antiserum was used to probe RD1
with detection using goat anti-rabbit IgG labeled with FITC
(red) and LYN was probed using a specific mAb with detection
using a goat anti-mouse IgG labeled with FITC (green).
Analyses were repeated using different combinations of fluorescent
labeled antisera with similar results.
|
|
In order to address further the possibility that pde46 and LYN interact
in intact COS7 cells, we utilized a confocal scanning microscopy
approach. Immunofluorescence analyses of COS7 cells was done (Fig.
5B) using an antiserum specific for pde46 (rhodamine; red) and mAb specific for LYN (fluorescein;
green). We noted (Fig. 5B) that pde46
immunofluorescence was evident both at discrete cortical regions of the
cell periphery and also in a filamentous network surrounding the
nucleus that reflects the major cytoskeletal arrangement in these cells
(12). The distribution of LYN immunofluorescence (Fig. 5B)
was remarkably similar to that of pde46 and, indeed, overlay of the
images yielded an essentially uniform "yellow" image,
suggesting that both LYN and pde46 were highly co-localized in COS7
cells. In contrast to analyses with pde46, it is clear that the
distribution of the short rat PDE4A isoenzyme, RD1, in these cells was
entirely different from that of LYN and could be clearly distinguished
(Fig. 5B). In addition the plasma membrane-located guanine
nucleotide regulatory protein, Gs
, was shown to have a
punctate location at the cell plasma membrane which was readily differentiated from that of pde46 (Fig. 5B). Such data
provide independent evidence in support of an interaction between LYN and pde46 occurring in the particulate fraction of COS7 cells. Our
confocal analyses might also imply that in intact COS7 cells the major
fraction of pde46 is essentially particulate/LYN-associated. It is thus
possible that cellular disruption may lead to the release of a fraction
of pde46, but not LYN, which is subsequently found in the high speed
supernatant (cytosol) fraction.
Within the sequence of pde46 are consensus motifs for protein kinase A
to elicit phosphorylation. We have thus attempted to ascertain whether
pde46 would still be able to interact with LYN SH3 under conditions of
elevated cAMP where protein kinase A might be expected to be activated
and pde46 could possibly become phosphorylated. We show here (Fig.
2D) that whereas pde46 can indeed be phosphorylated by PKA
in vitro, this phosphorylated species is still capable of
binding to LYN SH3 (Fig. 2E). We also noted that pde46
obtained from COS7 cells treated with the adenylyl cyclase activator,
forskolin, and the nonspecific PDE inhibitor,
isobutylmethylxanthine, in order to increase intracellular cAMP
levels, did not alter the ability of pde46 to complex LYN SH3 (Fig.
2F). Under the conditions of such an experiment it is not
known to what extent pde46 might have become phosphorylated by PKA;
nevertheless, the entire soluble pde46 component could be bound to LYN
SH3 (Fig. 2F). Such data indicate that under conditions of
elevated cAMP levels pde46 can still associate with the LYN SH3 domain.
PDE4-selective inhibitors serve as potent anti-inflammatory agents of
potential therapeutic use (15-18). Of these, rolipram has served as
the paradigm. However, an enigma associated with this particular
compound is its apparent ability to discriminate between two
conformational states of PDE4 isoenzymes that exhibit different
affinities for inhibition by rolipram (15, 16). The molecular basis
underlying these two proposed conformational states, at least as
regards PDE4A isoenzymes, is unknown. Of particular interest then was
our striking observation (12) that, expressed transiently in COS7
cells, the particulate form of pde46 was found to be profoundly more
sensitive to inhibition by rolipram than the cytosolic form of pde46.
Not only this, but the kinetic mechanism of rolipram inhibition of
particulate-associated pde46 appeared to be altered in a fashion that
implied that the enzyme in this fraction had undergone a conformational
change (12). Here we evaluated the ability of rolipram to inhibit pde46
when complexed with the SH3 domains of both LYN (Fig.
6A and Table II) and FYN (Table II) provided as GST fusion proteins. These data clearly demonstrated that SH3-bound pde46 exhibited a profound increase in its
sensitivity to inhibition by rolipram. Indeed, the IC50 values for inhibition of LYN SH3- and FYN SH3-associated pde46 were
~17- and ~3-fold lower, respectively, than those observed for
cytosolic pde46 expressed in COS7 cells (Table II). Such differences were of a similar magnitude (~13-fold) to that reported previously by
us (12) for particulate-associated pde46 (IC50 = 0.2 µM) compared with cytosolic pde46 (IC50 = 2.6 µM) expressed in transiently transfected COS7 cells. We
determined, as a control, that the addition of purified GST to
cytosolic pde46 did not affect the sensitivity of this enzyme to
inhibition by rolipram (Table II). In a further control we attempted to
determine whether complex formation per se would alter the
sensitivity of pde46 to rolipram by analyzing cytosolic pde46 which had
been immunoprecipitated with an antiserum specific to PDE4A. This
immobilized form of pde46 did not show any change in the sensitivity
and kinetics of inhibition by rolipram (Table II). Thus particulate
pde46 did not show an altered sensitivity to rolipram inhibition merely on the basis that it was immobilized; rather, the specific interaction of an appropriate SH3 domain with its LR2 region was required.

View larger version (23K):
[in this window]
[in a new window]
|
Fig. 6.
Rolipram inhibition of LYN SH3-bound
pde46. Panel A shows the dose-dependent
inhibition, by rolipram, of soluble cytosolic pde46 ( ) and of LYN
SH3-bound pde46 ( ); panel B shows the Dixon
plot transform of the reciprocal of the PDE activity against
[rolipram] for cytosolic pde46 ( ) and LYN-SH3 bound pde46 ( );
panel C shows the dose-dependent inhibition, by
rolipram, of b-pde46 found in the soluble cytosolic fraction ( ),
the P2 fraction ( ), and when LYN SH3 bound ( ); panel D
shows the Dixon plot transform for particulate-bound b-pde46 ( )
and LYN SH3-bound b-pde46 ( ). PDE4 enzymes were all expressed in
COS7 cells. Where appropriate, in these experiments 200 µg of protein
of COS7 cell lysate was used together with 2× 200 µg of the various
GST fusion proteins as described underr "Experimental Procedures."
Assays were done at 1 µM cAMP substrate using
preparations with activities shown in Table II. Data are mean ± S.D. for n = 3 separate experiments.
|
|
Dixon plots of the reciprocal of reaction velocity versus
rolipram concentration have been shown to be linear for the cytosolic form of pde46 but parabolic for the particulate enzyme expressed in
COS7 cells (12). Such a profound change is indicative of an altered
kinetic status of the particulate form of pde46. This has been
interpreted (12) as being due to a conformation-induced change in the
particulate enzyme that altered the kinetics of inhibition from simple
competitive to partial competitive in nature. Although two alternative
possibilities have been suggested (3), namely that the particulate
fraction of COS7 cells might contain pde46 as either a mixture of two
conformational states with different affinities for rolipram or one
exhibiting negatively cooperative kinetics of inhibition, in both
instances SH3 domain interaction would have to achieve a conformational
change in pde46 which led to altered kinetics of rolipram inhibition.
In a similar fashion to that seen for particulate-associated pde46, we
see here that Dixon replots (Fig. 6B) for rolipram
inhibition of LYN SH3-bound pde46 were both parabolic with similar Hill
coefficients that were strikingly less than unity (Table II).
Similarly, analyzing the N-terminal truncate h6.1 bound to the SH3
domains of both LYN and FYN, we also observed a profound increase in
sensitivity to inhibition by rolipram compared with the soluble enzyme
(Fig. 7A and Table II) as well
as parabolic Dixon plots compared with the linear ones seen for the
cytosolic form of h6.1 expressed in COS7 cells (Fig. 7B and
Table II). Furthermore, we show here that, as with pde46, the
particulate (P1) associated form of h6.1 also exhibited an enhanced
sensitivity to inhibition by rolipram and parabolic Dixon replots,
compared with its soluble (cytosolic) form (Table II and Fig. 7,
panels A and B).

View larger version (17K):
[in this window]
[in a new window]
|
Fig. 7.
Rolipram inhibition of LYN SH3-bound
h6.1. Panel A shows the dose-dependent
inhibition of h6.1 found in the cytosol ( ) compared with that found
in the P1 fraction ( ) and when bound to LYN SH3 ( );
panel B shows the Dixon transform of the
reciprocal of the PDE activity against [rolipram] for cytosolic h6.1
( ), P1 fraction pellet-associated h6.1 ( ), and h6.1 bound to LYN
SH3 ( ). PDE4 enzymes were expressed in COS7 cells. Where
appropriate, in these experiments 200 µg of protein of COS7 cell
lysate was used together with 2× 200 µg of the various GST fusion
proteins as described under "Experimental Procedures." Data show
means ± S.D. for n = 3 separate experiments.
Assays were done at 1 µM cAMP substrate using
preparations with activities shown in Table II.
|
|
We would like then to suggest that it is SH3 domain binding to the LR2
region that is responsible for triggering a conformational change in
the catalytic unit of the particulate bound forms of pde46 and h6.1 and
that is detected by a profound alteration in the kinetics of rolipram
inhibition of these enzymes. As indicated by the studies described
above, it would seem that the particulate, but not soluble (cytosolic),
form of pde46 is associated with LYN in COS7 cells. We thus propose
that it is the interaction between the LR2 region of pde46 and h6.1
with the LYN SH3 domain that underpins the altered kinetics of rolipram
inhibition seen for the particulate forms of both these enzymes (Table
II). In order to try and gauge this we analyzed (Fig. 6, panels
C and D) the kinetics of rolipram inhibition of
b-pde46. This mutant, although expected to interact with LYN SH3
through its N-terminal region, has a disrupted LR2 region (Fig. 1)
which, on the basis of studies done using
b-h6.1 (Fig. 2), will be
unable to interact with the SH3 domain of LYN. Analyses were done
comparing the soluble, cytosolic form of
b-pde46 with both this form
bound to LYN SH3 and the
b-pde46 form expressed in the particulate
fraction of transfected COS7 cells (Table II and Fig. 6 panels
C and D). As distinct from native pde46, the
b-pde46
mutant exhibited dose-effect curves for rolipram inhibition that were
similar in form for both the cytosolic, the particulate, and the LYN
SH3-bound states (Fig. 6, panels C and D).
Additionally, Dixon plots of the reciprocal of PDE activity against
rolipram concentration were also linear for both the LYN SH3-bound and
the particulate-bound forms of
b-pde46 (Fig. 6, D), as
well as those for
b-h6.1 (Table II). Interestingly, the
IC50 values derived for inhibition of
b-pde46 by
rolipram in these various states mirrored that exhibited by the
cytosolic form of pde46 (Table II), indicating that this deletion "traps" the enzyme in the low affinity state for rolipram
inhibition. Additional evidence that it is essential to have an LR2
region able to interact with SH3 domains to elicit a heightened
sensitivity to inhibition by rolipram can also be demonstrated by
analysis of rpde6, the rodent homologue of pde46. We have shown
previously (11) that particulate rpde6 did not exhibit any increase in sensitivity to rolipram inhibition compared with its cytosol form, and
we confirm this observation here (Table II). In addition, we show here
that association of cytosolic rpde6 with LYN SH3 did not engender any
change in sensitivity to inhibition by rolipram (Table II) and,
furthermore, Dixon analyses of rolipram inhibition of
particulate-associated rpde6 were linear and indicative of kinetics of
simple competitive inhibition by rolipram (Table II and data not
shown), unlike those for particulate pde46 (12). Such data are all
consistent with the importance of the proline- and arginine-rich
sequences found in the human PDE4A LR2 region for the SH3- and
particulate association-mediated change in rolipram kinetics of the
human PDE4A enzyme, pde46.
While rolipram serves as the paradigm for a PDE4-selective inhibitor
that can discriminate between the two proposed conformational states of
PDE4 isoenzymes, it has also been suggested that certain other
selective PDE4 inhibitors are not able to be similarly discriminatory (15, 16). Thus the PDE4-selective inhibitor SB207499 (Fig. 8A) has been demonstrated (35)
to inhibit similarly the two conformational "states" that PDE4
enzymes(s) adopt and that can be discriminated by rolipram. On this
basis, if SH3 interaction with the LR2 region of pde46 offered a means
of "switching" PDE4 conformation, one might predict that such an
interaction would not affect inhibition of pde46 by SB207499. Indeed
this seems to be the case (Fig. 8B) as the IC50
values for SB207499 of the cytosolic, particulate (P2), and LYN
SH3-bound forms of pde46 were very similar at 0.12 ± 0.02, 0.10 ± 0.02, and 0.15 ± 0.04 µM, respectively
(n = 3 separate experiments; means ± S.D.).
RP73401 (Fig. 8A) has been shown (36) to be unable to
discriminate between the two conformational states of PDE4 detected by
altered rolipram inhibition. We observed here that RP73401 inhibited
the cytosolic, P2 particulate and LYN SH3-associated forms of pde46
similarly (Fig. 8C) with IC50 values of 1.0 ± 0.2, 1.5 ± 0.3, and 0.9 ± 0.4 nM,
respectively (n = 3 separate experiments). Thus the
particulate and LYN SH3-bound forms of pde46 appear to reflect a
distinct conformational state of the enzyme that is detectable by
increased sensitivity to inhibition by rolipram. As pde46 is expressed
in many cell types (6), it is possible that such a conformer may provide at least a fraction of the high affinity rolipram-inhibited fraction reported by many investigators in crude cell systems (3, 16,
37-39).

View larger version (20K):
[in this window]
[in a new window]
|
Fig. 8.
Inhibition of pde46 by the PDE4-selective
inhibitors RP73401 and SB207499. Panel A,
structure of rolipram, RP73401, and SB207499; panel
B, SB207499 dose inhibition data for the inhibition of pde46
activity from transiently transfected COS7 cells using the high speed
supernatant/cytosol (s/n) fraction ( ), the particulate
(P2) pellet fraction ( ), and the cytosol fraction bound
to LYN SH3 ( ); panel C, RP73401 dose
inhibition data for the inhibition of pde46 activity from transiently
transfected COS7 cells using the high speed supernatant/cytosol
(s/n) fraction ( ), the particulate (P2) pellet
fraction ( ), and the cytosol fraction bound to LYN SH3 ( ). Where
appropriate, in these experiments 200 µg of protein of COS7 cell
lysate was used together with 2× 200 µg of the various GST fusion
proteins as described under "Experimental Procedures." The
dose-effect data represent the average of three separate experiments
using different cell transfections. Assays were done at 1 µM cAMP substrate using preparations with activities
shown in Table II.
|
|
It is thus likely that pde46 expressed in different cell types may
exhibit markedly different sensitivities to inhibition by rolipram,
dependent upon whether its LR2 region is interacting with an SH3
domain-containing protein or not. Indeed, the magnitude of any
alteration in rolipram IC50 value may reflect the nature of
the interacting SH3 domain containing protein, as pde46 association with LYN SH3 and FYN SH3 yielded bound enzymes that exhibited rather
different IC50 values for inhibition by rolipram (Table II). The putative interaction between human PDE4A isoenzymes and SH3-containing proteins might not only be expected to occur in cell
particulate fractions but also with cytosolic SH3 containing proteins
in a cell type-specific fashion. This may provide an explanation for
observations indicating that pde46 and h-pde1, a species equivalent to
h6.1, expressed in different systems from the COS7 cells used in this
study, yielded parabolic Dixon plots for rolipram inhibition (36, 40,
41). Intriguingly, both of these groups showed that apparently normal
kinetics of rolipram inhibition ensued when grossly N-terminal
truncated species, which lacked the LR2 region, were used (36, 41).
Certainly, if soluble pde46, expressed in COS1 cells (41), and soluble
h6.1 (h-pde1), expressed in Saccharomyces
cerevisiae (36, 40), were able to interact with a cytosolic,
SH3 domain-containing protein then such truncation, which served to
remove the LR2 domain, would be expected to convert the complex
kinetics of rolipram inhibition to a simple Michaelian state. As the
COS1 cell system was experimentally accessible to us, we took this as a
model system to evaluate our proposal. We were able to confirm the
observations of Owens et al. (41) that, unlike expression in
the cytosol of COS7 cells (Table II), pde46 expressed in the cytosol of
COS1 cells yielded parabolic Dixon plots for rolipram inhibition (Table
II). Additionally, we also expressed h6.1 in COS1 cells and found (Fig.
9), again in dramatic contrast to
expression in COS7 cells, nonlinear Dixon plots for rolipram inhibition
(Fig. 9 and Table II). In both these instances the cytosolic forms of
these enzymes expressed in COS1 cells were considerably more sensitive
to inhibition by rolipram than when they were expressed in COS7 cells
(Table II). However, we were also able to demonstrate that
b-h6.1,
the mutant whose crippled LR2 region was unable to interact with SH3
domains (Fig. 2), exhibited normal Michaelian kinetics of rolipram
inhibition when expressed in COS1 cells (Fig. 9 and Table II). This
mutant was also similarly sensitive to inhibition by rolipram when it was expressed in both COS1 and COS7 cells (Table II). Furthermore, when
rpde6, the rat homologue of pde46, was expressed in COS1 cells, the
cytosolic form of this enzyme exhibited normal Michaelian kinetics of
inhibition by rolipram (Table II) as did the cytosolic rat N-terminal
PDE4A truncate, Met26-RD1 (Fig. 9). Such observations
indicate the importance of an intact human PDE4A LR2 domain in allowing
cytosolic PDE4A species expressed in COS1 cells, rather than COS7
cells, to exhibit non-Michaelian kinetics of rolipram inhibition. We
suggest that in COS1 cells, as distinct from COS7 cells, cytosolic
pde46 may be interacting through its LR2 domain with an SH3-containing
protein, and it is this interaction that is responsible for switching
its conformation and thus altering its kinetics of inhibition by
rolipram. To investigate this possibility, we examined whether pde46
could be co-immunoprecipitated with an SRC family tyrosyl kinase from
the cytosol of COS1 cells. Although we were unable to
co-immunoprecipitate pde46 from the cytosol of either COS1 or COS7
cells with LYN (Fig. 5A), we discovered that pde46 could be
immunoprecipitated with SRC itself from the high speed supernatant
fraction of COS1 cells but not from COS7 cells (Fig. 5A).
The pde46 enzyme that was co-immunoprecipitated with SRC kinase from
the high speed supernatant fraction of COS1 cells exhibited a similar
(102 ± 18%; mean ± S.D.; n = 3) activity to that of pde46 (100%; 1 µM cAMP substrate) expressed
in the high speed supernatant fraction of COS7 cells, where it was not associated with SRC kinase (Fig. 5A). This is consistent
with the lack of change in the PDE activity of pde46 we observed upon its association with SRC SH3 (see below). The amount of pde46 that
could be immunoprecipitated with SRC kinase from the high speed
supernatant fraction of COS1 cells varied in a range of 20-38%
(range; n = 3) of the total pde46 in the fraction. This may indicate that either not all of the pde46 is bound to SRC kinase in
the cytosol of COS1 cells or that complexes have been disrupted during
the processes of cell lysis, fractionation, and immunoprecipitation.
Nevertheless, such data clearly indicate that such an interaction does
occur in the high speed supernatant analyzed. This suggests that PDE
assays done on this fraction will possibly monitor two populations of
pde46, one which is bound to SRC kinase and one which is not. That
population bound to SRC kinase will exhibit an increased sensitivity to
inhibition by rolipram. Thus the presence of two enzyme populations of
pde46, found in the high speed supernatant fraction of COS1 cells, with very different sensitivities to inhibition by rolipram will in itself
serve to exacerbate the nonlinear, parabolic nature of Dixon replots
(3). Thus the association of cytosolic pde46 with SRC kinase in COS1
cells, but not COS7 cells, may provide the molecular basis of the
differences in kinetics of rolipram inhibition of this human PDE4A
enzyme expressed in these two different cell backgrounds.

View larger version (14K):
[in this window]
[in a new window]
|
Fig. 9.
Inhibition of h6.1 transiently expressed in
COS1 cells. Dixon replot analyses are shown for rolipram
inhibition of cytosol/high speed supernatant fractions of COS1 cells
transfected to express either h6.1 ( ), b-h6.1 ( ), or
Met26-RD1 ( ). These data are typical of experiments done
on three separate occasions using different cell transfections. Assays
were done at 1 µM cAMP substrate using preparations with
activities shown in Table II.
|
|
Catalytic activity toward cAMP did not appear to alter subsequent to
the interaction of pde46, expressed in the cytosol of COS7 cells, with
LYN SH3. Thus the free enzyme exhibited a Km value
of 2.6 ± 0.6 µM, whereas that complexed to LYN SH3
exhibited a Km value of 2.9 ± 0.5 µM (mean ± S.D.; n = 3 separate experiments). In addition there was little change in the
Vmax value of the LYN SH3-bound enzyme, which
was 97 ± 18% (n = 3) that of the enzyme found in
the high speed supernatant (100%). Similar data were found for rpde6,
with Km values of 2.4 ± 0.7 and 3.2 ± 0.4 (mean ± S.D.; n = 3 separate experiments) for
the free and LYN SH3-bound enzymes, respectively. Additionally the
Vmax value of the LYN SH3-complexed enzyme was
96 ± 8% (mean ± S.D.; n = 3 separate
experiments) that of the free enzyme, indicating that no change in
activity occurred.
 |
CONCLUSION |
We would like to suggest that pde46 and, indeed, presumably all
human PDE4A isoenzymes will be able to undergo a conformational change
in their catalytic unit that is controlled by a "switch" located in
their exon 8-encoded (32) LR2 region. This can be operated by
interaction with the SH3 domains of certain proteins, with a propensity
for the involvement of those of SRC family tyrosyl kinases. Such an
interaction may be of relevance in that tyrosyl protein kinases, such
as LYN, are of crucial importance in controlling the function of a
variety of cell types, including T-cells (42) and monocytes (43), where
PDE4-selective inhibitors can potently inhibit cell function and exert
anti-inflammatory effects (15). The switch region in human PDE4A
enzymes is located within LR2. It appears to be critically dependent
upon an insert that is found in human but not in rat PDE4A forms (32).
This contains the five residue repeat PRPRP (residues 314-318) that is
required to create a putative SH3 binding motif of the form,
RXXPXXP. There is a precedent for conformational
changes in proteins that are subject to interaction with SH3 domain
containing proteins in that the binding of FYN SH3 to the HIV-1 Nef
protein causes a change in the conformation of the proline-rich helical
region in Nef (44). PDE4 enzymes are multidomain proteins, and it is possible that an SH3 domain-induced change in the structure of the LR2
region could trigger an alteration in the conformation of the catalytic
unit that is detected by altered inhibition by the competitive
inhibitor, rolipram. Certainly there is a precedent for this in that
Conti and co-workers (45, 46) have shown that protein kinase A-mediated
phosphorylation within the UCR1 region of HSPDE4D3 can activate this
isoenzyme. Such a modification also appears to increase the sensitivity
of PDE4D3 to inhibition by rolipram through a conformational change
which is distinct from that which leads to enzyme activation (47). Such
data indicate that conformational changes in PDE4 N-terminal regions
are able to alter the conformation and functioning of the catalytic
unit. The suggestion has been made (16, 39) that PDE4 enzymes may be
able to adopt distinct conformations that are reflected by different
susceptibilities to inhibition by rolipram. The PKA-mediated phosphorylation of HSPDE4D3 may present one possible route for this to
be achieved (47, 48). Here we suggest that an additional route may be
provided by human PDE4A isoenzymes when they interact through their LR2
region with appropriate SH3 domain-containing proteins. That this
interaction causes such a profound change in the sensitivity of these
enzymes to inhibition by rolipram might be expected to have
consequences for the development of PDE4 inhibitors. For example, the
same PDE4A isoenzyme may exhibit very different sensitivities to
inhibition by certain PDE4-selective inhibitors in different cells,
subcellular fractions, and changes in the conditions of cell
activation. The identification of such a molecular switch also offers
the possibility of developing agents able to interact with the human
PDE4A LR2 domain which either mimic or ablate the action triggered by
SH3 binding and thus may either enhance or depress the ability of PDE4A
enzymes to be inhibited by compounds akin to rolipram.
There is considerable similarity between the sequences of the catalytic
regions of various PDE family members (3, 6, 7). Colicelli and
co-workers (49, 50) have devised an ingenious means of identifying
residues within PDE4 which are essential for selective inhibition by
rolipram. These all map within a discrete region of ~70 residues
which encompasses part of the C-terminal end of the catalytic unit and
part of the C-terminal region itself (Fig. 1). This "inhibitor
selectivity" region is encoded within a single exon (exon 15) that is
unique to the PDE4 family (32). It is thus tempting to suggest that if
this inhibitor selectivity region defines specificity for rolipram
inhibition, then the binding of SH3 domains to the LR2 region of human
PDE4A isoenzymes may trigger conformational changes within the
inhibitor selectivity region. Intriguingly, it has been noted (51) that
certain mutations in the inhibitor selectivity region, while exerting
severe effects on inhibition of the enzyme by rolipram, have little
effect on inhibition by RP73401. This indicates that there are binding
interactions within the inhibitor selectivity region that are specific
for each of these PDE4-selective inhibitors. Indeed, structural
differences between rolipram and RP73401 (Fig. 8A) would
indicate that this might be expected. The conformational change
elicited by the interaction of an SRC family tyrosyl kinase SH3 domain
with the LR2 region of human PDE4A may then extend to specific regions
at the C-terminal end of the catalytic unit that are probed by rolipram
and not by RP73401. Thus subtle and localized changes ensue through
this interaction. The precise nature of such changes will require
delineation subsequent to three-dimensional structural analyses of a
human PDE4A which includes the LR2 domain.
We suggest that the particulate form of pde46 expressed in COS7 cells
interacts with the tyrosyl kinase LYN. The basis of such a contention
lies upon our observations that (i) these species can be
co-immunoprecipitated, (ii) they were shown to co-localize in
immunofluorescence studies, (iii) they are both found in the P1 and P2
pellet fractions of COS7 cells where they are similarly resistant to
release by Triton X-100 and high [NaCl], and (iv) that the functional
change in rolipram inhibition seen for the particulate form of pde46,
compared with its cytosolic form, can be mimicked upon the binding of
the cytosolic form to a LYN SH3. We localize the site of interaction of
LYN SH3 which leads to altered rolipram inhibition to the LR2 region of
pde46 using both a deletion strategy, comparison with rat homologues,
and by demonstrating the interaction of a chimeric LR2 region with a
chimeric LYN SH3 region. Although a diverse range of proteins exhibit
SH3 domains, the number of proteins that have been identified as being
able to bind them is still relatively small. This study identifies a
possible contender and points to the SH3 domain interaction triggering
a conformational change in the multi-domain PDE4A enzyme. Notwithstanding this, the putative physiological role of an interaction between the LR2 region of pde46 and an SH3-containing protein remains
to be ascertained.
 |
FOOTNOTES |
*
This work was supported by a grant from the Medical Research
Council (United Kingdom) and also by equipment grants from the Wellcome
Trust.The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
We dedicate this work to Grant Scotland, Ph.D., who died tragically in
a climbing accident in Glencoe, Scotland, on September 20, 1998.
Both authors contributed equally to this study.
§
Deceased.
¶
To whom correspondence and reprint requested should be
addressed. Tel.: 44-141-330-5903; Fax: 44-141-330-4365; E-mail:
M.Houslay{at}bio.gla.ac.uk.
 |
ABBREVIATIONS |
The abbreviations used are:
PDE, cyclic
nucleotide phosphodiesterase;
PDE4, cAMP-specific family 4 PDE;
UCR, upstream conserved region;
LR, linker region;
pde46, a human PDE4
isoenzyme known formally as HSPDE4A4B;
h6.1, an N-terminally truncated
form of pde46 known formally as HSPDE4A4C (GenBankTM
accession number U18087) and also as clone h-PDE1 (HSPDE4A4A;
M37744), rpde6, rat homologue of pde46 and known formally as RNPDE4A5
(GenBankTM accession number L27057);
rpde39, rat PDE4A
isoenzyme (RNPDE4A8;
L36467), rolipram,
4-{3-(cyclopentoxyl)-4-methoxyphenyl}-2-pyrrolidone;
RP73401, [N-(3,5-dichloropyrid-4-yl)-3-cyclopentyloxy-4-methoxy-benzamide];
mAb, monoclonal antibody;
SB207499 (Ariflo), [c-4-cyano-4-(3-cyclopentyloxy-4-methoxyphenyl)-r-1-cyclohexanecarboxylic
acid];
PKA, protein kinase A;
VSV, vesicular stomatitis virus.
 |
REFERENCES |
-
Rubin, C. S.
(1994)
Biochim. Biophys. Acta
1224,
467-479[Medline]
[Order article via Infotrieve]
-
Houslay, M. D.,
and Milligan, G.
(1997)
Trends Biochem. Sci.
22,
217-224[CrossRef][Medline]
[Order article via Infotrieve]
-
Houslay, M. D.,
Sullivan, M.,
and Bolger, G. B.
(1997)
Adv. Pharmacol.
44,
225-342
-
Faux, M. C.,
and Scott, J. D.
(1996)
Trends Biochem. Sci.
21,
312-318[CrossRef][Medline]
[Order article via Infotrieve]
-
Beavo, J. A.
(1995)
Physiol. Rev.
75,
725-748[Abstract/Free Full Text]
-
Bolger, G.
(1994)
Cell. Signalling
6,
851-859[CrossRef][Medline]
[Order article via Infotrieve]
-
Conti, M.,
Nemoz, G.,
Sette, C.,
and Vicini, E.
(1995)
Endocr. Rev.
16,
370-389[Medline]
[Order article via Infotrieve]
-
Juilfs, D.,
Fulle, H. J.,
Zhao, A. Z.,
Houslay, M. D.,
Garbers, D.,
and Beavo, J. A.
(1997)
Proc. Natl. Acad. Sci. U. S. A.
94,
3388-3395[Abstract/Free Full Text]
-
Shakur, Y.,
Pryde, J. G.,
and Houslay, M. D.
(1993)
Biochem. J.
292,
677-686[Medline]
[Order article via Infotrieve]
-
Shakur, Y.,
Wilson, M.,
Pooley, L.,
Lobban, M.,
Griffiths, S. L.,
Campbell, A. M.,
Beattie, J.,
Daly, C.,
and Houslay, M. D.
(1995)
Biochem. J.
306,
801-809[Medline]
[Order article via Infotrieve]
-
McPhee, I.,
Pooley, L.,
Lobban, M.,
Bolger, G.,
and Houslay, M. D.
(1995)
Biochem. J.
310,
965-974[Medline]
[Order article via Infotrieve]
-
Huston, E.,
Pooley, L.,
Julien, J.,
Scotland, G.,
McPhee, I.,
Sullivan, M.,
Bolger, G.,
and Houslay, M. D.
(1996)
J. Biol. Chem.
271,
31334-31344[Abstract/Free Full Text]
-
Bolger, G. B.,
McPhee, I.,
and Houslay, M. D.
(1996)
J. Biol. Chem.
271,
1065-1071[Abstract/Free Full Text]
-
Bolger, G. B.,
Erdogan, S.,
Jones, R. E.,
Loughney, K.,
Scotland, G.,
Hoffmann, R.,
Wilkinson, I.,
Farrell, C.,
and Houslay, M. D.
(1997)
Biochem. J.
328,
539-548[Medline]
[Order article via Infotrieve]
-
Torphy, T. J.,
Barnette, M. S.,
Hay, D. W. P.,
and Underwood, D. C.
(1994)
Env. Health Perspect.
102,
79-84
-
Souness, J. E.,
and Rao, S.
(1997)
Cell. Signalling
9,
227-236[CrossRef][Medline]
[Order article via Infotrieve]
-
Giembycz, M. A.
(1996)
Trends Pharmacol. Sci.
17,
331-336[CrossRef][Medline]
[Order article via Infotrieve]
-
Schudt, C.,
Tenor, H.,
and Hatzelmann, A.
(1995)
Eur. Respir. J.
8,
1179-1183[Abstract/Free Full Text]
-
Bolger, G.,
Michaeli, T.,
Martins, T.,
St John, T.,
Steiner, B.,
Rodgers, L.,
Riggs, M.,
Wigler, M.,
and Ferguson, K.
(1993)
Mol. Cell. Biol.
13,
6558-6571[Abstract]
-
Pawson, T.
(1995)
Nature
373,
573-580[CrossRef][Medline]
[Order article via Infotrieve]
-
Saksela, K.,
Cheng, G.,
and Baltimore, D.
(1995)
EMBO J.
14,
484-491[Abstract]
-
Sullivan, M.,
Egerton, M.,
Shakur, Y.,
Marquardson, A.,
and Houslay, M. D.
(1994)
Cell. Signalling
6,
793-812[CrossRef][Medline]
[Order article via Infotrieve]
-
Wilson, M.,
Sullivan, M.,
Brown, N.,
and Houslay, M. D.
(1994)
Biochem.l J.
304,
407-415
-
O'Connell, J. C.,
McCallum, J. F.,
McPhee, I.,
Wakefield, J.,
Houslay, E. S.,
Wishart, W.,
Bolger, G.,
Frame, M.,
and Houslay, M. D.
(1996)
Biochem. J.
318,
255-262[Medline]
[Order article via Infotrieve]
-
Huston, E.,
Lumb, S.,
Russell, A.,
Catterall, C.,
Ross, A. H.,
Steele, M. R.,
Bolger, G. B.,
Perry, M.,
Owens, R.,
and Houslay, M. D.
(1997)
Biochem. J.
328,
549-558[Medline]
[Order article via Infotrieve]
-
Laemmli, U. K.
(1970)
Nature
222,
680-685
-
Scotland, G.,
and Houslay, M. D.
(1995)
Biochem. J.
308,
673-681[Medline]
[Order article via Infotrieve]
-
Smith, K. J.,
Scotland, G.,
Beattie, J.,
Trayer, I. P.,
and Houslay, M. D.
(1996)
J. Biol. Chem.
271,
16703-16711[Abstract/Free Full Text]
-
Thompson, W. J.,
and Appleman, M. M.
(1971)
Biochemistry
10,
311-316[Medline]
[Order article via Infotrieve]
-
Marchmont, R. J.,
and Houslay, M. D.
(1980)
Biochem. J.
187,
381-392[Medline]
[Order article via Infotrieve]
-
Bradford, M. M.
(1976)
Anal. Biochem.
72,
248-254[CrossRef][Medline]
[Order article via Infotrieve]
-
Sullivan, M.,
Rena, G.,
Begg, F.,
Gordon, L.,
Olsen, A. S.,
and Houslay, M. D.
(1998)
Biochem. J.
333,
693-703[Medline]
[Order article via Infotrieve]
-
Yi, T.,
Bolen, J. B.,
and Ihle, J. N.
(1991)
Mol. Cell. Biol.
11,
2391-2398[Medline]
[Order article via Infotrieve]
-
Chang, B. Y.,
Conroy, K. B.,
Machleder, E. M.,
and Cartwright, C. A.
(1998)
Mol. Cell. Biol.
18,
3245-3256[Abstract/Free Full Text]
-
Barnette, M. S.,
Christensen, S. B.,
Essayan, D. M.,
Grous, M.,
Prabhakar, U.,
Rush, J. A.,
Kagey-Sobotka, A.,
and Torphy, T. J.
(1998)
J. Pharmacol. Exp. Ther.
284,
420-426[Abstract/Free Full Text]
-
Jacobitz, S.,
McLaughlin, M. M.,
Livi, G. P.,
Burman, M.,
and Torphy, T. J.
(1996)
Mol. Pharmacol.
50,
891-899[Abstract]
-
Souness, J. E.,
Carter, C. M.,
Diocee, B. K.,
Hassall, G. A.,
Wood, L. J.,
and Turner, N. C.
(1991)
Biochem. Pharmacol.
42,
937-945[CrossRef][Medline]
[Order article via Infotrieve]
-
Souness, J. E.,
and Scott, L. C.
(1993)
Biochem. J.
291,
389-395[Medline]
[Order article via Infotrieve]
-
Torphy, T. J.,
Dewolf, W.,
Green, D. W.,
and Livi, G. P.
(1993)
Agents Actions
43,
51-71
-
Torphy, T. J.,
Stadel, J. M.,
Burman, M.,
Cieslinski, L. B.,
McLaughlin, M. M.,
White, J. R.,
and Livi, G. P.
(1992)
J. Biol. Chem.
267,
1798-1804[Abstract/Free Full Text]
-
Owens, R. J.,
Catterall, C.,
Batty, D.,
Jappy, J.,
Russell, A.,
Smith, B.,
O'Connell, J.,
and Perry, M.
(1997)
Biochem. J.
9,
575-585
-
Erpel, T.,
and Courtneidge, S. A.
(1995)
Curr. Opin. Cell Biol.
7,
176-182[CrossRef][Medline]
[Order article via Infotrieve]
-
Herrera-Velit, P. R. N. E.
(1157)
J. Immunol.
156,
1157-1165[Abstract]
-
Arold, S.,
Franken, P.,
Strub, M.-S.,
Hoh, F.,
Benichou, S.,
Benarous, R.,
and Dumas, C.
(1997)
Structure
5,
1361-1372[Medline]
[Order article via Infotrieve]
-
Alvarez, R.,
Sette, C.,
Yang, D.,
Eglen, R. M.,
Wilhelm, R.,
Shelton, E. R.,
and Conti, M.
(1995)
Mol. Pharmacol.
48,
616-622[Abstract]
-
Sette, C.,
Iona, S.,
and Conti, M.
(1994)
J. Biol. Chem.
269,
9245-9252[Abstract/Free Full Text]
-
Hoffmann, R.,
Wilkinson, I. R.,
McCallum, J. F.,
Engels, P.,
and Houslay, M. D.
(1998)
Biochem. J.
333,
139-149[Medline]
[Order article via Infotrieve]
-
Sette, C.,
and Conti, M.
(1996)
J. Biol. Chem.
271,
16526-16534[Abstract/Free Full Text]
-
Pillai, R.,
Kytle, K.,
Reyes, A.,
and Colicelli, J.
(1993)
Proc. Natl. Acad. Sci. U. S. A.
90,
11970-11974[Abstract]
-
Pillai, R.,
Staub, S. F.,
and Colicelli, J.
(1994)
J. Biol. Chem.
269,
30676-30681[Abstract/Free Full Text]
-
Atienza, J. M.,
Susanto, D.,
Huang, C.,
McCarty, A. S.,
and Colicelli, J.
(1999)
J. Biol. Chem.
274,
4839-4847[Abstract/Free Full Text]
Copyright © 1999 by The American Society for Biochemistry and Molecular Biology, Inc.