Binding Interaction of the Heregulinbeta egf Domain with ErbB3 and ErbB4 Receptors Assessed by Alanine Scanning Mutagenesis*

Jennifer T. JonesDagger , Marcus D. Ballinger§, Paul I. PisacaneDagger , Julie A. LofgrenDagger , V. Danial FitzpatrickDagger parallel , Wayne J. Fairbrother§, James A. Wells§, and Mark X. SliwkowskiDagger **

From the Departments of Dagger  Protein Chemistry and § Protein Engineering, Genentech, Inc., South San Francisco, California 94080

    ABSTRACT
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Abstract
Introduction
Procedures
Results
Discussion
References

Individual residues of the heregulinbeta (HRG) egf domain were mutated to alanine and displayed monovalently on phagemid particles as gene III fusion proteins. Wild type HRGbeta egf domain displayed on phage was properly folded as evidenced by its ability to bind ErbB3 and ErbB4 receptor-IgG fusion proteins with affinities close to those measured for bacterially produced HRGbeta egf domain. Binding to ErbB3 and ErbB4 receptors was affected by mutation of residues throughout the egf domain; including the NH2 terminus (His2 and Leu3), the two beta -turns (Val15-Gly18 and Gly42-Gln46), and some discontinuous residues (including Leu3, Val4, Phe13, Val23, and Leu33) that form a patch on the major beta -sheet and the COOH-terminal region (Tyr48 and Met50-Phe53). Binding affinity was least changed by mutations throughout the Omega -loop and the second strand of the major beta -sheet. More mutants had greater affinity loss for ErbB3 compared with ErbB4 implying that it has more stringent binding requirements. Many residues important for HRG binding to its receptors correspond to critical residues for epidermal growth factor (EGF) and transforming growth factor alpha  binding to the EGF receptor. Specificity may be determined in part by bulky groups that prevent binding to the unwanted receptor. All of the mutants tested were able to induce phosphorylation and mitogen-activated protein kinase activation through ErbB4 receptors and were able to modulate a transphosphorylation signal from ErbB3 to ErbB2 in MCF7 cells. An understanding of binding similarities and differences among the EGF family of ligands may facilitate the development of egf-like analogs with broad or narrow specificity.

    INTRODUCTION
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Abstract
Introduction
Procedures
Results
Discussion
References

Members of the ErbB (also known as the human epidermal growth factor receptor or HER) family of receptor tyrosine kinases play a central role in embryonic development as evidenced by observations that mice lacking these receptors die in utero or soon after birth (1). Well defined experimental systems have shown that EGFR1 and ErbB4 ostensibly behave as fully functional ligand-binding and signaling receptors (2, 3). In contrast, ErbB2 is not activated directly by any known ligand whereas ErbB3 is devoid of intrinsic tyrosine kinase activity (4). Transactivation of ErbB2 is a common and perhaps obligatory step in ligand-activated processes involving EGFR, ErbB3, and ErbB4 (5). Importantly, human cancers of epithelial origin are especially prone to expressing dysregulated ErbB receptors with overexpression of EGFR or ErbB2 being the most common molecular alteration encountered (6, 7). These observations taken together with the combinatorial nature of the receptor-signaling pathways suggest that the relative levels of receptor expression and control of their activation are critical in maintaining normal homeostasis.

Neuregulins, also known as heregulins (HRGs) or neu differentiation factors, are a family of ligands that bind with low affinity to ErbB3 or ErbB4. In the presence of ErbB2 a high affinity heteromeric receptor complex is formed (8, 9). However, the mechanism of affinity site conversion and stoichiometry of oligomerization are uncertain. Many HRG isoforms have been identified and all are splice variants encoded by a single gene (10-12). The egf domain is necessary and sufficient to bind ErbB3 and ErbB4 and for all known biological activities of the HRGs (11). Two types of egf domains have been identified, alpha  and beta , which differ by four of eight residues between the 5th and 6th cysteine and in the region carboxyl-terminal to the 6th cysteine (11, 12).

The solution structure of the HRGalpha egf domain was recently solved to high resolution using NMR spectroscopy (13, 14). The molecule contains an NH2-terminal 3 stranded beta -sheet and a smaller 2 stranded beta -sheet near the COOH terminus. The relative orientation of the 2 sheets is well defined and stabilized by four hydrogen bonds (3 of which involve Arg44). The NH2- and COOH-terminal residues (1-2 and 50-63) and the Omega -loop (24-30) are disordered in the structure and have been shown to be highly flexible from 15N-relaxation measurements.2 Overall, the structure of the HRG egf domain is similar to EGF, although they share limited amino acid identity (14). Despite these strong structural similarities, the binding specificity of EGF and HRG are distinct and mutually exclusive. Substitution of a block of HRG residues (1-5) into EGF created a molecule capable of binding both EGF and ErbB2/ErbB3 in SKBR3 cells, indicating that the NH2 terminus is important for receptor specificity (15).

In this study, a comprehensive mutational analysis of the egf domain of HRGbeta was conducted to determine areas critical for binding receptors and initiating signal transduction. Individual amino acids of the HRGbeta egf domain were changed to alanine to identify loss of binding. To facilitate this, mutants were expressed monovalently on phagemids and analyzed for binding to ErbB3 and ErbB4 receptor-IgG fusion proteins in an ELISA format. Selected mutants were expressed in Escherichia coli as thioredoxin (Trx) fusion proteins for further characterization. We identified regions of the molecule critical for the preservation of binding to the receptors. Mutation of some residues had similar effects on binding to both receptors, while other changes had differential effects on ErbB3 and ErbB4 binding. Comparison of the HRG binding data and mutagenesis studies of EGF indicates that there are both similarities and differences in how these ligands interact with their receptors. We also characterized receptor binding and phosphorylation by many of the alanine mutants on cells expressing ErbB receptors. All of the mutants tested were able to induce phosphorylation and MAPK activation through ErbB4 receptors and were able to modulate a transphosphorylation signal from ErbB3 to ErbB2 in MCF7 cells.

    EXPERIMENTAL PROCEDURES
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Abstract
Introduction
Procedures
Results
Discussion
References

Reagents-- The egf domain of HRGbeta (177-244) was expressed in bacteria. This form of HRGbeta was radioiodinated as described previously (8). Preparation of receptor-IgGs was described by Fitzpatrick et al.3

Phagemid Construction, Kunkel Mutagenesis, and Phage Display-- Alanine mutants were generated by Kunkel mutagenesis (16) using the phagemid display vector pHRG2-g3 as a template (43). pHRG2-g3 contains residues 177-244 of the egf domain of HRGbeta (hereafter referred to as residues 1-68) attached to the COOH terminus of the pIII gene. Phagemids displaying HRGbeta mutants were produced by the addition of M13KO7 helper phage to XL1-Blue cells (Stratagene, Inc.) containing the mutated recombinant plasmid (17). Phagemid stocks were made by precipitating cell culture broths after 18-24 h growth with 20% PEG (8000), 2.5 M NaCl. Phagemids were resuspended in PBS (0.01 M sodium phosphate, 0.1 M NaCl, pH 7.5).

ELISA Measurement of Phagemid Affinities-- Microtiter plates (Nunc, Maxi-sorb 96-well) were coated overnight with 0.5 µg of rabbit anti-human IgG, Fc gamma  fragment-specific antibodies (Jackson Immunoresearch) in 100 µl of 0.05 M NaCO3, pH 9.6, at 4 °C. Plates were blocked with PBS + 0.1% BSA, washed with PBS + 0.05% Tween 20 (wash buffer), then wells were coated with 0.1 or 0.05 µg of ErbB receptor-IgG in PBS + 0.1% BSA + 0.05% Tween 20 (binding buffer) for 1 h and washed again. Serial dilutions of receptor-IgG (competitor) and a concentration of phage, predetermined to give 60% saturation without competitor, were added to wells in 100 µl of binding buffer and incubated for 2 h to overnight at room temperature. Following incubation, plates were washed thoroughly, incubated with 1:900 dilution of anti-M13 horseradish peroxidase conjugate (Pharmacia) for 20 min. The level of phagemid bound was assayed using o-phenylenediamine dihydrochloride substrate solution (Sigma). EC50 values were calculated with a 4-parameter fit equation and based on the concentration of soluble receptor-IgG needed to displace 50% of the phagemid from the plate. Assays on both receptors were carried out with the same phage preparation, on the same day. This served as a control of phage expression because numerous mutants showed little to no affinity for ErbB3, but good displacement curves could be generated for ErbB4 binding.

Trx-HRG Vector Preparation and Mutagenesis-- Selected HRG mutants were expressed in a soluble form as Trx fusion proteins. The parent vector, pET23a (Novagen), was digested with NdeI and HindIII and Trx (bases 2722-3180, pTrxFus vector, Invitrogen) was inserted. HRGbeta alanine mutants were initially generated by site-directed mutagenesis in the vector pRK5.gDhrgB1 (18). To facilitate cloning of these mutants into the Trx containing vector, a KpnI site was engineered into the pRK5.gDhrgB1 vector immediately upstream of the NdeI site at position 5407. The modified parental HRG was cleaved from this vector and inserted at the carboxyl terminus of Trx at the KpnI and BamHI cloning sites. Subsequently, additional mutants were generated in pRK5.gDhrgB1, digested with NdeI and BamHI, and the resultant 313-base pair fragment was ligated in-frame to the carboxyl terminus of Trx. The vector also contains an enterokinase protease recognition site (DDDDK) between Trx and HRG.

Expression and Purification of Trx-HRG Protein-- Trx-HRG expression was driven by an inducible T7 promoter. Cloning, cell growth, and expression were carried out as described in the Novagen pET system manual. Briefly, cloning was done in XL1-Blue cells and expression of soluble protein in BL21DE3 host cells. BL21DE3 cells containing the appropriate mutant plasmid were grown at 37 °C in LB medium until the OD550 reached 0.3-0.6, then protein was induced by 0.4 nM isopropyl-1-thio-beta -D-galactopyranoside and growth was allowed to continue for 2-4 h at 28 °C. Cells were collected by centrifugation, resuspended in 0.02 M Tris-HCl, 0.025 M EDTA, pH 7.5 (1/20 cell culture volume). Cells were lysed by freezing on dry ice, thawing at 37 °C, and vigorous sonication. The freeze, thaw, and sonication cycle was repeated 3 times. Protein was further solubilized in 6 M guanidine HCl, 0.1 M Tris-HCl, pH 8.8, then sulfitolized by the addition of 0.1 M Na2SO3 and 0.2 M Na2S4O6, and stirred at room temperature for 1.5 h. Protein was dialyzed into 0.05 M Tris-HCl, pH 7.5, 0.01 M methionine. After dialysis, the insoluble material was removed by centrifugation at 35,000 × g for 15 min. The supernatants were purified by Fast Flow Q Sepharose (Pharmacia) chromatography using a 15-ml column equilibrated with 0.01 M Tris-HCl, pH 7.5, and protein was eluted by a NaCl gradient. The Trx-HRG mutants eluted between 0.5 and 0.6 M NaCl. Trx-HRG was refolded overnight at room temperature after addition of 1 mM cysteine. Finally, the protein was dialyzed into 0.05 M Tris-HCl, pH 7.5. Each protein preparation was visualized on Coomassie-stained gels for purity and quantified by amino acid analysis.

Enterokinase Cleavage of Trx-HRG-- Trx-HRG protein was dialyzed into EKMax reaction buffer (Invitrogen, San Diego, CA). EKMax enzyme was added to a final ratio of 0.5 units per 20 µg of protein and incubated at 37 °C for 4 h. EKMax was inactivated with soybean trypsin inhibitor resin (Sigma) for 2 h at room temperature. The cleavage products were purified by reverse phase high performance liquid chromatography, then analyzed by mass spectrometry and protein sequence determination. One peak contained a product of approximately 9 kDa, this corresponded to a truncation at residue Lys55.

Affinity Measurement of Soluble Mutants for ErbB3 and ErbB4-- Receptor-IgGs were coated on plates (Maxisorp C break apart strip wells, Nunc) as described for phage ELISA. Assays were carried out with a constant amount of 125I-labeled HRGbeta 1 (residues 1-68) and varied concentrations of unlabeled Trx-HRG fusion protein. Following incubation, plates were washed and bound radiolabeled HRG was counted on a gamma -counter (Isodata). ErbB4-IgG assays were conducted in PBS, 1% BSA for blocking and fusion protein binding and PBS, 0.05% Tween 20 for washes. For the ErbB3-IgG assays, the wash buffer was TBST (0.025 M Tris-HCl, pH 7.5, 0.15 M NaCl, 0.02% Tween 20), the blocking buffer was TBST, 1% BSA, and the binding buffer (RPMI binding buffer) used was RPMI 1640 cell culture medium (Life Technologies, Inc.), 2 mM glutamine, 100 units/ml penicillin, 100 µg/ml streptomycin, 10 mM HEPES buffer, pH 7.2, 0.2% BSA.

ErbB4 Phosphorylation-- K562 cells (ATCC) were stabily transfected with ErbB4 and propagated as described previously (19). Cells were treated 4 h to overnight with 10 ng/ml phorbol 12-myristate 13-acetate (Calbiochem) prior to use. Cells (1 × 106/treatment) were stimulated with each HRG variant for 8 min. Cells were pelleted, supernatant withdrawn, and reaction stopped by addition of lysis buffer (0.025 M Tris-HCl, pH 7.5, 0.15 M NaCl, 10% glycerol, 1% Triton X-100, 1% CHAPS, 200 nM phenylmethylsulfonyl fluoride, 100 units of apoprotinin, 10 µM leupeptin, 100 µM sodium orthovanadate, 100 µM sodium pyrophosphate). ErbB4 protein was immunoprecipited from the lysate with a mixture of 5 µg each of anti-ErbB4 monoclonal antibodies, 1459 and 1461,4 and 20 µl of immobilized protein A/G (Ultralink Immobilized Protein A/G, Pierce). Following rotation at 4 °C overnight, the mixture was centrifuged, immobilized beads were washed with lysis buffer, spun again, and resuspended in reducing, SDS gel loading buffer. Material was boiled 5 min and the supernatant loaded on 4-12% Tris glycine gels (Novex). Protein was transferred from the gels to nitrocellulose and Western blotting done with chemiluminescence detection and following the manufacturer's instructions (ECD, Amersham). Blots were probed with anti-phosphotyrosine antibody conjugated to horseradish peroxidase (Transduction Laboratories) at a dilution of 1:1000.

ErbB3 and ErbB4 K562 Cell Binding-- Cells were cultured and pretreated with phorbol 12-myristate 13-acetate as described above. Cells were plated in 96-well plates at density of 125,000 cells/well in final volume of 250 µl of RPMI binding buffer. Cells were incubated with varied concentrations of unlabeled Trx-HRG and a constant amount (200 pM) of 125I-labeled HRGbeta . Following overnight incubation at 4 °C, cells were collected onto 0.45-µm polyvinylidene difluoride membranes (Multiscreen-HV Filtration Plate, Millipore), washed 2 times with TBST, allowed to dry and the amount of bound radioactivity was measured.

MAPK Activation Measurements-- ErbB4 transfected K562 cells were grown to stationary phase in RPMI medium containing 10% fetal bovine serum. Prior to stimulation, cells were placed in 0.1% fetal bovine serum containing medium. After 4 h, cells were washed with PBS, then stimulated with ligand for 12 min. Following stimulation, cells were lysed in reducing SDS-polyacrylamide gel electrophoresis running buffer. 2.5 × 105 cell equivalents were loaded per lane on 4-20% Tris glycine gels (Novex). Protein was transferred from the gels to nitrocellulose. Western blotting and detection were done following the manufacturer's instructions (ECD, Amersham). Activated MAPK was detected with an anti-active MAPK antibody (Promega) at a dilution of 1:20,000. The non-activated forms of ERK 1 and ERK 2 were detected with antibodies, each used at 1:2000 (Santa Cruz). Both proteins were detected with an anti-rabbit horseradish peroxidase-conjugated secondary antibody, used at 1:10,000 (Transduction Labs).

MCF7 KIRA-ELISA-- This assay was conducted as described previously (20).

    RESULTS
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Abstract
Introduction
Procedures
Results
Discussion
References

Residues Important for Binding ErbB3 and ErbB4 Are Located Throughout the egf Domain-- Every amino acid of the HRGbeta (residues 1-53) egf domain, except for 6 cysteines and 2 alanines, was mutated to alanine (Fig. 1) and displayed monovalently on filamentous phage. Each alanine mutant displayed on phage was analyzed for binding to ErbB3 and ErbB4-IgGs in an ELISA format. The affinity of the phage displayed HRGbeta was 13.6 ± 2.4 nM for ErbB3-IgG and 18.9 ± 5.4 nM for ErbB4-IgG, which was slightly weaker than HRGbeta (1-68) binding to the two receptors (8.2 ± 1.0 nM for ErbB3 and 14.8 ± 2.1 nM for ErbB4) under the same assay conditions.


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Fig. 1.   Ribbon diagram of HRG egf domain (1-53) derived from PDB coordinates of HRGalpha NMR structure (14). Residues depicted in gray and teal correspond to alanine mutants expressed on phage. Residues in teal were also expressed as Trx-HRG fusions. The 2 natural alanines are depicted in magenta and the 6 cysteines are shown in yellow. Below the figure is the amino acid sequence of the HRG egf domain with residues highlighted in the same colors as are shown on diagram, as well as the hEGF and hTGFalpha egf domain sequences. (Figure was drawn with the program MOLMOL (42).)

Overall, alanine substitutions in HRGbeta caused greater reduction in binding to ErbB3 than ErbB4 (Fig. 2). Notably when residues His2 and Leu3 were changed to alanine, binding affinity for ErbB3 was dramatically reduced, yet there was virtually wild type affinity for ErbB4. These residues lie in the first beta -strand of the major beta -sheet. There were disruptions in binding for residues mutated in the helical region, particularly at position Phe13. Binding to ErbB3 and ErbB4 receptors was reduced in the region including the type I' beta -turn (Val15-Gly18) and in the area of the type I beta -turn surrounding the 6th cysteine (Gly42-Cys45). Alanine substitutions throughout strand II of the major beta -sheet and the Omega -loop (Phe21-Ser30) showed the least change in affinity for either receptor. Mutant K35A caused a significant reduction in binding for ErbB3 and ErbB4; this residue lies between the 4th and 5th cysteines. Loss of affinity was greater for ErbB4 compared with ErbB3, for two residues, Ser52 and Phe53. No residues beyond Phe53 were mutated in this study, because NMR studies showed that the COOH-terminal residues of HRGalpha , Met51-Tyr63, are disordered and flexible.


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Fig. 2.   Alanine scan of HRG egf domain on ErbB3 and ErbB4. Histogram showing change in binding affinity of each alanine mutant measured on ErbB3 and ErbB4 IgGs. ErbB3 binding results are shown in black and ErbB4 in white. Binding was measured in a phage ELISA and the EC50 was calculated as the concentration of soluble receptor required to displace 50% of the total amount of phage bound to immobilized receptor. Ratios are calculated from the EC50 of mutant compared with wild type HRGbeta , also displayed on phage. Each bar is representative of a single assay. On this plot, a ratio of 100 is equivalent to no measurable displacement with receptor concentrations up to 1 µM and a ratio of one means that the affinity of the mutant is equivalent to wild type. To the right is a schematic showing the major structural features of the HRG egf domain structure based on the ribbon diagram shown in Fig. 1.

A structural representation of the alanine scanning mutagenesis data is shown in Fig. 3, A and B. Loss of function of residues for binding ErbB3 and ErbB4 lie on both faces of the molecule. The two beta -turns (Val15-Gly18 and Gly42-Gln46) were greatly affected by mutagenesis to alanine. There were affected hydrophobic residues, Leu3 and Val4, on the opposite surface from Arg44, as well as residues His2, Lys35, and Arg31.


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Fig. 3.   Alanine scan of HRG egf domain by phage display. Models are surface plots of HRGalpha egf domain defined by the NMR structure generated by Jacobsen et al. (14). The orientation of the models on the right of the figures are the same as in Fig. 1, while the models on the left are rotated 180°. Residues are color coded with respect to the degree of affinity loss when changed to alanine. A, HRGbeta binding to ErbB3: dark teal, residues with >10-fold loss in affinity; light teal, 5-10-fold loss; bright yellow, 2-5-fold; light yellow, <2-fold compared with wild type; white, Cys or Ala. B, HRGbeta binding to ErbB4: dark teal, residues with >5-fold loss in affinity; light teal, 2-5-fold loss; bright yellow, 1-2-fold loss; light yellow, equal or less than wild type; white, Cys or Ala. Figure drawn with Insight II Program (Molecular Simulations, Inc.).

Affinity of E. coli Expressed HRG Mutants Parallel Those Displayed on Phage-- Individual mutants that had relatively large effects on binding to one or both receptors were selected for further analysis and characterization. Mutants were expressed as Trx fusion proteins, containing an additional 31 amino acids of HRGbeta preceding the egf domain. There is an enterokinase cleavage site in the protein between Trx and HRG allowing for removal of the Trx fusion partner. Initial experiments showed that the fusion protein was able to bind to the receptors, although the affinity was somewhat reduced compared with HRGbeta (1-68) on ErbB3 (Table I).

                              
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Table I
Binding affinities for HRG egf domain forms

Binding data for the phage displayed and soluble mutants are shown in Table II. Mutants without significant loss of affinity compared with wild type were generally adequately measured in the phage format. If the loss in affinity was greater than 3-fold in the soluble format, it was often measured as a ratio of 100 (no detectable binding) in the phage system on ErbB3. While most mutant ratios were lower in the soluble format on ErbB3, F13A, V23A, F40A, R44A, and F53A, had a higher affinity ratio compared with the phage format. In particular, V23A gave inconsistent results when measured on phage, possibly due to inefficient expression (reviewed in Ref. 21). Overall, the binding results were more consistent between the soluble and phage displayed proteins for ErbB4 compared with ErbB3. Many of the soluble ratios (11 of 20) were higher than phage ratios on ErbB4. Conversion of Arg44 to alanine had the most impact on binding of any single mutant. No displacement was evident at 8 µM for either ErbB3 or ErbB4 binding.

                              
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Table II
Binding and phosphorylation analysis of HRG mutants

As an alternative means of assessing the overall structure of the alanine variants, we measured the ability of 3G11, a monoclonal antibody specific for the HRGbeta egf domain,4 to recognize the soluble mutants in a nonreducing Western blot (data not shown). The antibody detected all but 5 mutants with efficiency equal to its ability to recognize the Trx-HRG wild type protein, suggesting that for most mutants there were not large or global structural changes. The antibody did not recognize N16A, E39A, G42A, or Y48A and detected F40A at about 4% efficiency. With the exception of Gly42, these residues are proximal on the surface of HRG and are likely to be elements of the antibody-binding site, however, we cannot rule out the possibility that they are essential for structural integrity. Gly42 has unusual phi  and psi  angles (14) which would not easily be accommodated by alanine and the G42A mutation probably alters the protein backbone conformation. Residues Asn16 and presumably Glu39, which is a glycine in HRGalpha , also have positive phi  angles based on the structure of the HRGalpha egf domain.

Soluble Mutants Bind ErbB3 and ErbB4 Expressed on K562 Cells-- We wanted to assess binding of mutants to the receptors in the context of the natural plasma membrane. However, most cells express multiple members of the EGFR family and many have very low levels of ErbB4. Using K562 cells (a human erythroleukemia cell line that does not normally express any of the EGFR family members) transfected with either ErbB3 or ErbB4, we assessed binding to individual receptors (19). The affinities of HRG, Trx-HRG, and selected mutants were measured on each cell line. The relative binding affinity of selected mutants on cells was comparable to the data generated on the receptor-IgGs (Table III). There is some improvement of affinity on cells compared with IgGs seen not only with the thioredoxin fusion egf domains, but also with HRGbeta (177-244).

                              
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Table III
Binding affinities for HRG alanine mutants on ErbB3 and ErbB4 expressing K562 cells

ErbB4 Autophosphorylation Does Not Always Correlate with Binding Affinity for HRG Alanine Mutants-- To assess the receptor activation by each mutant, we measured ErbB4 phosphorylation, the first step in the signal transduction pathway. Stimulation of cells with HRGbeta and Trx-HRG(wt) resulted in a 1.6-2-fold increase in ErbB4 phosphorylation. Each Trx-HRG mutant was tested at two concentrations, corresponding to their measured EC50 (1 ×) on ErbB4-IgG and 10 times the EC50 (10 ×). A representative blot is shown in Fig. 4. About half of the mutants were able to achieve a level of phosphorylation equal to that obtained by treatment with either HRGbeta or Trx-HRG (Table II). There was little or no additional stimulation at 10 × concentration. Some mutants induced ErbB4 phosphorylation, but did not reach the fold increase seen with HRGbeta or Trx-HRG. Some mutants did not phosphorylate as well as expected based exclusively on their binding affinity and others phosphorylated despite poor binding affinity. Thus, phosphorylation does not always correlate with the binding affinity of the mutant. For instance, mutant R44A, which had no measurable affinity for the IgG receptors or on K562 cells, could induce a phosphorylation of ErbB4 in the K562 cells. It is likely that the affinity of R44A is too low to be detected in our assay formats.


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Fig. 4.   ErbB4 phosphorylation by alanine mutants. Representative anti-phosphotyrosine Western blot. ErbB4 transfected K562 cells were stimulated for 8 min with ligand. Cells were lysed and ErbB4 protein was immunoprecipitated. Blots were probed with an anti-phosphotyrosine antibody. Protein immunoprecipitated from approximately 7.5 × 105 cells was loaded in each lane. Cells were given no stimulation (lane 1), stimulated with HRGbeta at 100 nM (lane 2), 10 nM (lane 3), or 0.5 nM (lane 4), Trx-HRG at 200 nM (lane 5), 20 nM (lane 6), mutant H2A 400 nM (lane 7), 40 nM (lane 8), or mutant L3A 700 nM (lane 9), 70 nM (lane 10). All soluble mutants were tested for their ability to phosphorylate ErbB4, results are summarized in Table II.

ErbB4 Mediates MAPK Activation in K562 Cells Treated with HRG Mutants-- ErbB4 signal transduction proceeds through association with SHC (22) ultimately resulting in stimulation of MAPK activation. Under some conditions, other pathways of signaling are recruited (23). We assessed the ability of the mutants to activate MAPK. Similar to the ErbB4 tyrosine phosphorylation response, all of the mutants were able to induce MAPK (Fig. 5, and Table II). R44A effected the least response of any mutant, although MAPK activation was still about half the response of HRGbeta . All mutants were tested at a concentration equal to their EC50 on ErbB4-IgGs, except for Arg44 which was tested at 5 µM.


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Fig. 5.   Activation of MAPK by alanine mutants in ErbB4-transfected K562 cells. Representative anti-active MAPK and Erk 1 and Erk 2 Western blots. Cells were stimulated for 12 min with the indicated ligand. Cells were lysed, electrophoresed, and blots were probed with antibodies against the activated form of MAPK (A) or the non-activated Erk 1 and Erk 2 proteins (B). Protein from approximately 2.5 × 105 cells was loaded in each lane. Each stimulation was done in duplicate, as shown. Cells were given no stimulation, 15 nM HRGbeta , 30 nM P29A mutant, 25 nM R31A mutant, 700 nM N16A mutant, or 100 nM G17A mutant. Assays were conducted for all soluble mutants, results are summarized in Table II.

HRG Mutants Phosphorylate ErbB2 in MCF7 Cells-- Since ErbB3 is a weak or dead kinase (4), we could not directly monitor the phosphorylation of ErbB3. Instead we measured phosphorylation of ErbB2 in MCF7 cells upon stimulation with the mutants in a KIRA-ELISA (20). MCF7 cells contain normal levels of ErbB2 and ErbB3. They have very low levels of ErbB4. All of the mutants were able to stimulate phosphorylation of ErbB2 (Table II, Fig. 6). The EC50 values for HRGbeta (1-68) and for the Trx-HRG fusion protein were 0.36 (± 0.07) and 2.25 (± 0.41) nM, respectively, thus each showed higher affinity binding, as expected for ErbB3-ErbB2 interactions. It appears that many of the same residues are required for binding to the low affinity ErbB3 homomeric binding site and to the ErbB2/ErbB3 heteromeric site. In two cases, G42A and R44A, the ratio for the MCF7 KIRA was over 2-fold higher than that for the IgG binding. For other mutants, the ratios were lower in the MCF7 KIRA, these included F13A, N16A, V23A, R31A, and F40A.


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Fig. 6.   Phosphorylation of ErbB2 in MCF7 cells upon stimulation with HRG mutants. Absorbance measured correlates to the level of ErbB2 phosphorylation. EC50 values were calculated from a 4-P fit of the data. Cells were stimulated for 30 min with ligand at the indicated concentrations. Filled circles, HRGbeta (1-68); open squares, Trx-HRG wt; filled triangles, mutant P29A; open circles, mutant R31A; filled squares, mutant G42A, open triangles, mutant R44A.

All mutants, except for R44A, were able to recapitulate the maximal ErbB2 phosphorylation response at high concentrations. In MCF7 cells, the preferred receptor partners for HRG ligand binding are ErbB3 and ErbB2. In the absence of ErbB3 binding it is possible that ErbB2 phosphorylation would be mediated by ErbB4. To address this question, we blocked HRG-binding sites on ErbB4 receptors prior to stimulation with Trx-HRG mutants. Two different ErbB4 blocking antibodies4 were used in separate experiments. The level of ErbB2 phosphorylation in the presence of either antibody was virtually identical to the level with no antibody pretreatment. Preincubation with an anti-ErbB2 antibody, 2C4 (24), resulted in approximately 10% of the maximal phosphorylation level (data not shown), confirming that the response seen in the MCF7 cells with the mutants is a consequence of the interaction of ligand, ErbB2, and ErbB3.

    DISCUSSION
Top
Abstract
Introduction
Procedures
Results
Discussion
References

Conserved Residues in the HRG egf Domain Are Important for Binding to Both ErbB3 and ErbB4-- All ligands that bind members of the ErbB family of receptor tyrosine kinases do so through egf-like domains. This motif is defined by common six cysteine residues and a consensus protein fold. There is limited conservation of noncysteine residues and only three additional residues Gly18, Gly42, and Arg44 in the HRG egf domain are conserved in all members of the EGF family. Mutation of each of these conserved residues had a significant effect on HRG binding to either ErbB3 or ErbB4 (Fig. 2). In particular, the R44A mutant had the lowest affinity of any of the alanine mutants for binding to either ErbB3 or ErbB4 receptors. In HRG, Arg44 is situated in a type I beta -turn between the 2 strands of the minor beta -sheet and it acts as a hydrogen bond donor for Thr12-Phe13 and as a hydrogen bond acceptor for Val15 (Fig. 1). These hydrogen bonding interactions together with favorable hydrophobic interactions between Arg44, Phe13, and Val15 presumably stabilize the relative orientation of the two beta -sheet subdomains of HRG (14). The equivalent arginine residue is absolutely required for EGF or TGFalpha binding to EGFR (25, 26).

Initially, we were concerned that the overall structure of the R44A mutant would be disrupted, however, several experimental observations suggest that this was not the case. First, this mutant was detected with a monoclonal antibody, 3G11, whose binding epitope to HRG is proximal to Arg44. Second, apparently the R44A mutant had very low affinity for the receptors (>4 µM), since it induced receptor phosphorylation and MAPK activation. Thus, it appears that despite the low affinity of R44A for ErbB3 and ErbB4, it can still initiate signal transduction.

Many other residues throughout the molecule also resulted in loss of binding affinity when changed to alanine, which may suggest a large surface area for binding. For some of these residues it is difficult to ascribe their role as specific receptor contacts. Notably, significant loss of affinity upon alanine mutagenesis occurred in proximity of the 2 beta -turns, comprising residues Val15-Gly18 and Gly42-Gln46. These turns form the interface between the major and minor beta -sheet subdomains and are hydrogen bonded (Val15 HN to Arg44 O and N16Hdelta 21 to Cys45 O) (14). The Q46A mutant caused a major binding loss in both receptors, this residue forms a beta  bulge at the NH2 terminus of the last beta  strand in the molecule.

Few residues were identified in the region between Phe21 and Lys35 that affected HRG binding. This region consists of the second and third strands of the major beta -sheet and the Omega -loop connecting them and is a primary determinant for EGF and TGFalpha binding (27). Substitution of hydrophobic residues in EGF disrupted binding (28) and peptides of only this region of EGF have binding activity on EGFR (29, 30). In HRG, the Omega -loop is three residues longer than in EGF and TGFalpha . Removal of three residues from HRG in the Omega -loop has little effect on ErbB3 and ErbB4 binding (43). Conversely, insertion of this region from HRG into EGF greatly diminishes binding to the EGF receptor (15, 31). Thus, this loop does not seem to be involved in HRG binding, yet it is important for EGF and TGFalpha binding to their receptors. Addition of "extra" residues in this loop may prevent HRG binding to the EGF receptor.

Although the three disulfide bonds hold the egf domain in a consistent overall structure, many residues may play a role in defining subtle aspects of the molecular interaction. Jacobsen et al. (14) described two regions of hydrophobic and charged amino acids, each on one face of the major beta -sheet. They consist of Leu3, Phe21, Val23, and Leu33 on one side and Val4, Phe13, Met22, and Tyr32 on the other. In this study, Leu3, Val4, Phe13, Val23, and Leu33 had reduced affinity. Also the basic residue Arg31, which contacts Val23 had reduced affinity. In agreement with these findings, Hommel et al. (32) postulated that residues Phe13, Leu15, and His16 of EGF and the corresponding residues in TGFalpha constitute a binding patch.

Some Residues Appear to Direct Binding to Specific ErbB Receptors-- The alanine scanning mutagenesis of the HRGbeta egf domain reported here is the first detailed functional study of this growth factor with regard to its binding properties to its individual receptors ErbB3 and ErbB4. No naturally occurring ligand has been identified that binds to both EGFR and ErbB3. Such a bifunctional ligand, biregulin, has been created synthetically by Barbacci et al. (15). This fusion peptide was made by substituting the first five amino acids of EGF (NSDSE) with the corresponding residues from the HRG egf domain (SHLVK). However, a peptide consisting of only the NH2-terminal five amino acids of HRG had no binding affinity for the cells, suggesting that other regions of the egf domain are also important for binding. In agreement with these findings, we note that His2 and Leu3 result in the greatest loss of function when changed to alanine and the effect is more pronounced for ErbB3 than ErbB4. Leucine at position 3 is found only in the HRGs while histidine at position 2 is also present in hBTC, hTGFalpha , neuregulin-2alpha and neuregulin-2beta (33, 34), and neuregulin-3 (19). The first five amino acids of the HRG egf-like domain form a well defined beta -strand (14), while this region is poorly defined or disordered in hTGFalpha (35) and hEGF (32), respectively. Although the affinity of HRGbeta for ErbB3 and ErbB4 is similar, there are clearly differences in binding. Seven of the soluble mutants tested lost at least 2-fold affinity on ErbB3 compared with ErbB4. Conversely, only 3 mutants lost more than 2-fold affinity on ErbB4 compared with ErbB3. These data taken in conjunction with the known binding specificities of the "natural" ligands further suggest that ErbB3 has more stringent requirements for binding than ErbB4.

Lys35, located between the third disulfide bond formed by Cys34 and Cys36, had a significant affect on binding to ErbB3 when changed to alanine. In TGFalpha -like ligands, the analogous residue is a hydrophobe such as valine found in TGFalpha , while in EGF-like ligands, the requirement is for a residue capable of being a hydrogen bond donor. Replacement of this residue in TGFalpha with asparagine as found in EGF, or lysine such as in HRG or amphiregulin, resulted in loss of affinity (36). The presence of a hydrogen bond donor here may prevent binding to the wrong receptor.

HRGalpha and HRGbeta sequences diverge significantly past the 6th cysteine (Cys45). In the NMR structure of HRGalpha , the region from 50 to 63 was highly disordered and flexible, which is consistent with the fact that binding affinity of HRG to SKBR3 cells is improved by cleaving back to residue 50. Cleavage before Met50 in HRGbeta or Pro50 in HRGalpha results in significantly lower affinity (15). In this study, changing Met50 of HRGbeta to alanine had a moderate effect on binding. There appears to be a requirement for a hydrophobic residue in this region for all EGF family members (14). In EGF the corresponding residue, a leucine, is important for activity (37). Affinity for ErbB3 was reduced to a greater extent than for ErbB4 when Tyr48 was changed to alanine. Residues in the equivalent position in EGF (Arg) and TGFalpha (Ala) confer receptor specificity. Substitution of alanine for arginine in EGF converted it to a high affinity binder to chicken EGFR, similar to TGFalpha (38).

All of the mutants were able to induce phosphorylation and MAPK activation through ErbB4 receptors and were able to modulate a transphosphorylation signal from ErbB3 to ErbB2 in MCF7 cells. For most mutants, activation of signaling molecules correlated well with binding affinity. Some mutants had somewhat decreased ability to phosphorylate ErbB4 compared with their binding affinity. Triggering signal transduction via receptor ligand interactions requires not only that the ligand binds to the receptor, but that the percent receptor occupation and length of occupation is sufficient. Estimates suggest that less than 10% of EGF receptors need be occupied to get a full response (39).

In summary, binding of HRG to ErbB3 and ErbB4 receptors is affected by residues throughout its egf domain: including the NH2 terminus (His2-Leu3), the two beta -turns (Val15-Gly18 and Gly42-Gln46), some discontinuous residues that form a patch on the major beta -sheet and the COOH-terminal residues (Tyr48 and Met50-Phe53). The beta -turn region is important for binding both receptors equally, whereas others, such as His2 and Leu3 are differential determinants. Overall, these data correlate well with what is already known about EGF and TGFalpha , suggesting that they use similar parts of their surface to bind to their respective receptors. Many residues critical for HRG binding are in corresponding positions to critical residues in EGF and TGFalpha . Specificity may be determined in part by bulky groups that prevent binding to the unwanted receptor. For instance, EGF with a HRG-like three residue insertion in the Omega -loop has reduced affinity for EGFR (15, 31). Similarly, substitution of valine with lysine between the fourth and fifth cysteines in TGFalpha results in a 100-fold drop in affinity on chicken fibroblasts, but has no effect on EGF binding to EGFR (36). Relatively little is known about the structure of receptors in the EGFR family. While many receptors signal as dimers, there is evidence suggesting a higher order of ErbB receptor association or lateral signaling involving 3 different ErbB receptors (40). Recent data also suggest that EGF saturates the EGFR as a 2:2 complex (41). In HRG, residues encompassing both NH2 and COOH termini affect binding and suggest two binding sites. Knowledge of the receptor-binding site or sites would facilitate our understanding of how HRG binds to its receptors and development of new HRG receptor selective agonists and possibly antagonists.

    ACKNOWLEDGEMENTS

We thank our colleagues at Genentech, Inc.: Robert Akita for providing ErbB3 and ErbB4 transfected K562 cells and Shaily Jaini for conducting the MCF7 KIRA assays.

    FOOTNOTES

* The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Present address: Chiron Corp., Dept. of Biological Chemistry, 4560 Horton St., Emeryville, CA 94608.

parallel Present address: Pharmacopeia, Inc., Dept. of Biology, 3000 East Park Blvd., Cranbury, NJ 08512.

** To whom correspondence should be addressed: Genentech, Inc. MS 63, South San Francisco, CA 94080. Tel.: 650-225-1247; Fax: 650-225-5945; E-mail: marks{at}gene.com.

1 The abbreviations used are: EGFR, epidermal growth factor receptor; HRG, heregulin; ELISA, enzyme-linked immunosorbent assay; Trx, thioredoxin; PBS, phosphate-buffered saline; BSA, bovine serum albumin; TGFalpha , transforming growth factor alpha ; CHAPS, 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonic acid; MAPK, mitogen-activated protein kinase.

2 Fairbrother, W. J., Liu, J., Pisacane, P. I., Sliwkowski, M. X., and Palmer, A. J., III (1998) J. Mol. Biol., in press.

4 L. Bald, personal communication.

3 V. D. Fitzpatrick, P. I. Pisacane, R. L. Vandlen, and M. X. Sliwkowski, manuscript in preparation.

5 P. Osheroff, personal communication.

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Top
Abstract
Introduction
Procedures
Results
Discussion
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