Differential Recognition of Histone H10 by Monoclonal Antibodies during Cell Differentiation and the Arrest of Cell Proliferation*

Claude Gorka, Marie-Paule Brocard, Sandrine Curtet, and Saadi KhochbinDagger

From the Laboratoire de Biologie Moléculaire du Cycle Cellulaire, INSERM U309, Institut Albert Bonniot, Faculté de Médecine, Domaine de la Merci, 38706 La Tronche Cedex, France

    ABSTRACT
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Abstract
Introduction
Materials & Methods
Results
Discussion
References

Individual anti-H10 monoclonal antibodies were screened in an immunolocalization assay to isolate clones able to recognize H10 in a differentiation-dependent manner using a murine erythroleukemia cell line. Two clones were selected, one recognizing H10 only in differentiating cells (clone 27 antibody), and the other recognizing the protein constitutively (clone 34 antibody). Both antibodies recognized a restricted region of the protein located at the N-terminal part of the globular domain. Amino acids 24-30, essential for the recognition of the protein by the clone 27 antibody, are extremely conserved in all known H10-like proteins from sea urchin to human. Within these residues, proline 26, responsible for a bend in this region, plays a particularly important role in the epitope recognition. The region involved in the protein recognition by clone 34 antibody is larger and encompasses amino acids 20-30. However, proline 26 does not play an essential role in the structure of this epitope. Detailed analysis of the differential recognition of H10 in chromatin during cell differentiation and proliferation suggests that the modification of chromatin structure as well as that of H10 conformation can account for this effect. Indeed, in vitro study of H10-four-way junction DNA interaction showed that the N-terminal tail domain of the protein can influence the recognition of H10 by these antibodies when the protein interacts with DNA. The two monoclonal antibodies described here therefore seem to be valuable tools for investigating fine modulations in chromatin structure and the concomitant changes occurring in the conformation of the protein.

    INTRODUCTION
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Abstract
Introduction
Materials & Methods
Results
Discussion
References

Linker histone is an abundant basic protein present in almost all eukaryotes. The protein is involved in the formation of higher order structure in the chromatin (1) and the maintenance of the overall chromatin compaction (2). In general, linker histone has a tripartite structure: a central globular domain flanked by N- and C-terminal tail domains (3). The globular domain binds the linker DNA and interacts with the nucleosome where DNA enters and exits the nucleosome (4, 5). Unlike core histones, linker histones diverge significantly in sequence and structure (6, 7).

Numerous developmentally regulated variants of linker histone have been defined. These variants can be subdivided in three major groups in vertebrates as a function of their expression during development and cell differentiation (8). First, an embryonic form of linker histone is present during the oogenesis and the early development in amphibians. Replication-dependent types are present in all tissues during the life of the organism, and finally the differentiation-specific group accumulates in differentiating cells. Some members of this later group are tissue- and species-specific, like histones H5 and H1t. Others, like histone H10, are widely expressed in many tissues and in almost all vertebrates (9).

Previously, we have shown that there is a tight correlation between the type of linker histone expressed and the proliferative capacities of cells during early Xenopus development. Histone H10 appears relatively late and concomitant with a dramatic decrease in the cell proliferation during the tail bud-tadpole transition period (10). Therefore, crucial periods in development can be characterized by a transition in the linker-histone variants within chromatin. Nothing is known concerning the role of these variants in specific organization of the chromatin structure. Immunolocalization of these proteins using specific polyclonal and monoclonal antibodies provided interesting information concerning the distribution of a given linker histone variant in the nucleus (11-13). However, chromatin organization is extremely dynamic and is subject to permanent remodeling. One of the most striking examples of this phenomenon is early embryonic development. Indeed, transition periods have been defined during development that are characterized by the modification of both chromatin constituents and the proliferative capacities of cells (8). Moreover, later during development and in adult tissues, chromatin remodeling continues as adult type linker histones accumulate in cells (9). It is therefore of great importance to understand the nature of these remodeling processes and to evaluate their role in the expression of specific genetic programs.

The aim of this work was the identification of monoclonal antibodies raised against histone H10, showing specific abilities in recognizing this protein in chromatin. Individual anti-H10 monoclonal antibodies were screened in an immunolocalization assay to isolate clones able to recognize H10 in a differentiation-dependent manner. Antibodies characterized in this work appeared to be probes that are useful for monitoring chromatin structure modifications occurring concomitantly with regulatory events such as the onset of a differentiation program and the arrest of cell proliferation.

    MATERIALS AND METHODS
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Abstract
Introduction
Materials & Methods
Results
Discussion
References

Cell Culture-- Murine erythroleukemia (MEL)1 cells from clone G9, a subclone of F4NW0, were maintained in culture in minimum essential medium (Life Technologies, Inc.) containing 10% fetal calf serum (14). To induce differentiation, MEL cells in exponential growth were treated with hexamethylene-bis-acetamide (Sigma) as described previously (14). Clone 6 cells, a rat embryonic fibroblast cell line transformed by ras, were maintained in RPMI 1640 (Boehringer) supplemented with 5% fetal calf serum and glutamin 4 mM and grown in a humidified atmosphere of 95% air, 5% CO2 normally at 37 °C or shifted to 32 °C to induce the cell growth arrest (15).

Purification of Nuclei and Oligonucleosomes-- Nuclei were extracted from untreated or hexamethylene-bis-acetamide-treated MEL cells. Cells were collected and washed with phosphate-buffered saline. After centrifugation at 200 × g for 5 min, cells were lyzed in a lysis buffer containing 15 mM Tris-HCl, pH 7.4, 60 mM KCl, 15 mM NaCl, 0.65 mM spermidine, 2 mM EDTA, 0.5 mM EGTA, 0.34 M sucrose, 0.05% (v/v) Triton X-100, 1 mM dithiothreitol, 0.5 mM phenylmethylsulfonyl fluoride. After centrifugation at 1500 × g for 5 min, nuclei were rinsed with the same buffer lacking EDTA, EGTA, and Triton (buffer D).

To obtain chromatin, nuclei in buffer D were digested by micrococcal nuclease (Boehringer, 5 units/107 nuclei) for 7 min at 37 °C. Oligonucleosomes were fractionated on linear sucrose gradients in 1 mM phosphate buffer, pH 7, 80 mM NaCl, 0.2 mM EDTA.

Preparation of Digested and Recombinant Histone H10-- Mouse full-length histone H10 cDNA (16) or cDNAs corresponding to mutated H10 were cloned in pET expression vector (Novagen). All mutations and deletions were performed by polymerase chain reaction. Briefly, for N-terminal deletion mutants, oligonucleotides (33 bases) containing the desired sequence (removing an increasing number of amino acids from the N-terminal part of the protein, see Fig. 1) and an additional NdeI restriction site were used to amplify cDNAs by polymerase chain reaction. The 3' primer had the sequence of the stop codon region and an additional XhoI site. The proline-valine mutant as well as the 24-30 deletion mutant were produced according to the method described in Refs. 17 and 18. Polymerase chain reaction products were digested with NdeI and XhoI and cloned, and their sequences were verified.

The expression of the recombinant H10 was induced by 1 mM isopropyl-1-thio-beta -D-galactopyranoside, and the protein was extracted according to the standard protocol by 5% perchloric acid. Cyanogen bromide cleavage of histone H10 was performed as described by Dousson et al. (19).

Antibodies-- Anti-H10 antibodies were monoclonal antibodies produced in our laboratory as described previously (19). Antibodies used in this work were from clones 27E 8E10 (clone 27 antibody) and 34B10H4 (clone 34 antibody). For immunostaining, hybridoma supernatant was used, and for gel shift assays, Igs were purified as follows. Ascites were induced in BALB/c mice after the intraperitoneal injection of hybridoma cells (5 × 106 cells/mouse). Ascitic fluid was collected and centrifuged at 3000 × g for 10 min, and the supernatant was collected. Igs were then purified as described (20). Briefly, albumin and other non-Ig proteins were first precipitated with caprilyc acid. Then Igs were precipitated by ammonium sulfate.

Anti-H1 antibodies were elicited in rabbits. Primary injection and boost were performed using H1-yeast tRNA complex (3:1 w/w). Rabbits were subcutaneously injected at multiple sites with 100 µg of ox liver H1-1 and H1-2 (1 ml phosphate-buffered saline/Freund's adjuvant, v/v). Specific IgG was successively purified by protein A-Sepharose 4B chromatography and by affinity chromatography using H1-coupled cyanogen bromide-activated Sepharose 4B.

Protein Electrophoresis and Immunodetection-- H1 histones were analyzed by SDS-15% polyacrylamide gel electrophoresis (21). Proteins were transferred to a Hybond C extra membrane (Amersham Corp.) at 24 V (0.2 A) for 1 h with a semi-dry electrotransfer apparatus. The membrane was blocked in 50 mM Tris-HCl, pH 7.5, 150 mM NaCl (Tris-buffered saline) containing 3% bovine serum albumin. The membrane was incubated with specific antibodies and then with an horseradish peroxidase-linked sheep anti-IgG. Detection was performed by enhanced chemiluminescence kit (ECL, Amersham Corp.). Oligonucleosomes fractionated on sucrose gradient were dotted on Hybond C extra membrane (10 µg of chromatin for each fraction) and subjected to immunodetection as above.

Gel Shift Assays-- The four-way junction DNA was obtained by annealing four oligonucleotides synthesized according to the sequence published by Teo et al. (22). The four oligonucleotides were annealed in 10 mM Tris-HCl, 1 mM EDTA, and 50 mM NaCl, gel purified, and labeled by polynucleotide kinase and [gamma -32P]ATP.

Wild type or mutated H10 (1 µM) were incubated with labeled four-way junction DNA (75 nM) in 20 µl of binding buffer (10 mM Tris-HCl, pH 8, 15.6 mM NaCl, 5% Ficoll, and 50 µg/ml sonicated DNA from herring sperm) at room temperature for 30 min. DNA-protein interaction was analyzed in 4% polyacrylamide gel containing 50 mM Tris-base and 50 mM glycine, pH 8.9, that had been pre-electrophoresed at 4 °C (23). Antibody-H10-DNA interaction study was carried out as above, but after 15 min of incubation the antibody was added, and the incubation was carried out for an additional 15 min before analysis.

Total RNA Extraction and Northern Blot Analysis-- RNAs were extracted from cells and analyzed by Northern blot by methods described by Khochbin et al. (14).

Immunostaining-- Cells were collected and fixed with 3% paraformaldehyde in phosphate-buffered saline for 20 min at room temperature, permeabilized with 0.25% (v/v) Triton X-100 (Sigma), then incubated with monoclonal antibody against H10. The second antibody was a goat fluorescein isothiocyanate-conjugated F(ab')2 fragment against mouse IgG Fc fragment (Jackson Immunoresearch Lab). After immunolabeling, DNA was stained with DNA-specific fluorochrome Hoechst 33258 (Sigma). When immunostaining was carried out on nuclei, purified nuclei were obtained as described above, resuspended in 20 mM Tris, pH 7.4, 6 mM MgCl2 containing either 100 mM, 200 mM or 300 mM NaCl, at room temperature for 30 min then fixed with 3% paraformaldehyde in the same buffer for 1 h at +4 °C. Nuclei were then doubly stained according to the procedure described above.

Xenopus laevis embryos were taken at stage 36 of development, fixed with 4% paraformaldehyde in phosphate-buffered saline for 1 h at 4 °C, and embedded in Tissue Tek (Bayer-Diagnostic) according to published procedure (10). 10-µm cryosections were mounted and treated as described previously (10).

Analysis by Flow Cytofluorimetry-- The doubly stained cells were analyzed in a FACStar Plus (Becton Dickinson) using a dual laser configuration: the Hoechst fluorescence was excited at 340-360 nm by the first argon laser, and the fluorescein isothiocyanate fluorescence at 488 nm by the second argon laser. The fluorescence intensities were collected in a list mode. To determine the mean specific H10 fluorescence per cell we used ProCyt®, a computer program developed in our laboratory (available on request) (24).

    RESULTS
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Abstract
Introduction
Materials & Methods
Results
Discussion
References

Screening of Monoclonal Antibodies for H10 Recognition in Chromatin-- Previously, we have reported the preparation of monoclonal antibodies raised against histone H10 (19). In this work we undertook a screening of these antibodies for their ability to recognize the protein in chromatin. The first screening was performed using immunodetection of the protein in undifferentiated MEL cells. This work allowed us to define two clones: one (34B10H4) able to recognize H10 in chromatin and the second one (27E8E10) not able to bind the protein in this environment (both antibodies recognizing H10 in cellular or nuclear extracts with high specificity; data not shown). For simplicity, in the text we will refer to 34B10H4 and 27E8E10, as clone 34 and clone 27 antibodies, respectively. Preliminary mapping based on the recognition of peptides obtained by partial cleavage of H10 by cyanogen bromide (cleaving the protein at methionine 31) showed that the N-terminal part of the protein is essential for recognition; neither antibody recognized the protein fragment containing the amino acids 31-193 (Fig. 1A). We therefore focused our attention on the N-terminal part of histone H10. A series of experiments were planned to map precisely the epitopes recognized by these two antibodies and to elucidate the basis for the differential recognition of the protein in chromatin.


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Fig. 1.   Region of H10 involved in the recognition of the protein by monoclonal antibodies (clone 27E8E10 and 34B10H4 antibodies). A, partial cyanogen bromide cleavage of H10. Peptides were resolved on 15% SDS-polyacrylamide gel (Stain) and transferred to a membrane, and an immunodetection was carried out using the two antibodies (right panel). B, schematic representation of the bacterially expressed H10 bearing deletions and mutations (50 N-terminal AA are considered). The lines represent the N-terminal tail domains, and the boxes represent the globular domains. The two arrowheads in the Pro-Val mutant show the region where the mutation is placed. The gap in the delta 24-30 mutant represents the region deleted. C, the various mutants were analyzed on 15% SDS-polyacrylamide gel (Stain) and transferred to a membrane, and an immunodetection was carried out using the two antibodies and revealed by ECL system (27E8E10 and 34B10H4). WT means wild type mouse H10, and delta 10, delta 15, delta 20, delta 38, delta 41, and delta 44 stand for proteins having 10, 15, 20, 38, 41, and 44 N-terminal AA deleted respectively. Pro-Val (B) and P-V (C) mean a mutation converting proline 26 into valine, and delta 24-30 indicates a protein having a deletion covering the 24-30 AA region.

Precise Epitope Mapping-- Mouse H10 cDNAs encoding the wild type protein or proteins bearing mutations affecting the N-terminal tail and the globular domain were cloned into prokaryotic expression vectors to obtain purified recombinant proteins (Fig. 1B). The wild type recombinant protein was efficiently recognized by both antibodies, and moreover, the complete deletion of the N-terminal tail domain did not affect protein recognition (Fig. 1C, delta 20). However, the removal of 18 AA from the N-terminal part of the globular domain completely abolished the binding of these antibodies (Fig. 1C, delta 38). A portion of the protein covering the AA 20-38 region therefore plays an essential role in the recognition of the protein by both antibodies.

A more detailed analysis of the region recognized by these antibodies (AA 20-38 region) was performed. The comparison of the sequence covering this portion of H10 from vertebrate and H1delta from sea urchin (the adult type histone H1 in sea urchin, see Ref. 25) showed that in H1delta , the region homologous to the mouse H10 AA 25-32 portion (AA 33-40 in H1delta ) is absolutely conserved and is flanked by a nonconserved stretch of AA (Fig. 2A). This situation allowed us to more precisely map the epitopes recognized by these antibodies. We performed a Western blot with total H1 extracted from a mouse cell line (MEL cells), Xenopus, and adult sea urchin tissues and showed that only clone 27 antibody is able to recognize the protein in sea urchin, whereas both antibodies are able to recognize the protein in Xenopus and mouse (Fig. 2B). We concluded that this motif (AA 25-32) is sufficient for the recognition of the protein by clone 27 antibody. This experiment showed also that the AA 20-24 play an important role in the recognition of the protein by clone 34 antibody.


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Fig. 2.   Involvement of the AA 20-30 region in the recognition of the protein by the two antibodies. A, the sequences of the AA 21-39 region of H10 from human (34), mouse (16), rat (35), and Xenopus (36) were compared with the sequence of the corresponding region of the sea urchin H1delta (25). The identical AA are shaded. B, total H1 extracted from Xenopus and sea urchin tissues as well as from MEL cells were resolved on 15% SDS-polyacrylamide (Stain) and transferred into a membrane, and an immunodetection was carried out with the two antibodies (34B10H4 and 27E8E10, respectively). C, the scheme summarizes data presented in Fig. 1 and in A and B of this figure. The AA 20-30 and AA 24-30 regions appear to be essential for the recognition of the protein by the clone 34 antibody and the clone 27 antibody, respectively. N stands for N-terminal tail domain, and G stands for the globular domain.

To confirm the importance of AA 24-30 region, a H10 mutant was prepared containing a deletion that covers precisely the AA 24-30 region. This deletion completely abolished the recognition by the clone 27 and 34 antibodies (Fig. 1C, delta 24-30). This portion of the protein is therefore essential for recognition by both antibodies.

Considering the crystal structure of H5 (26), it is obvious that the proline 26 is involved in the formation of a bend in the unstructured part of the N-terminal region before the helix I. Moreover, this proline is one of the most conserved amino acids in all known H1s (not shown, see also Ref. 27). It was therefore important to study the influence of this residue on the recognition of the protein by these antibodies.

Using site-directed mutagenesis, we changed this proline into a valine that is supposed to destroy this bend. Interestingly, this mutation abolished almost completely the recognition of the protein by the clone 27 antibody, whereas the recognition of the protein by the clone 34 antibody is not affected (Fig. 1C, P-V).

These experiments therefore allowed establishment of a precise map of the motifs recognized by these antibodies. AA 20-30 play an important role in the recognition of the protein by clone 34 antibody, whereas the AA 24-30 are sufficient for recognition by the clone 27 antibody (Fig. 2C).

Interaction of H10 with Four-way Junction DNA and the Recognition of the Target Epitope by Clone 34 and 27 Antibodies-- The high affinity binding of H1 to four-way junction DNA (23, 28) allows the study of the specific aspects of H1-DNA interactions (29). We took advantage of this model to determine how the defined target epitopes are recognized by our antibodies when H10 interacts with DNA. Conditions for a complete shift of the labeled four-way junction DNA upon the addition of recombinant H10 (wild type or mutated) were determined, excesses of the clone 27 and 34 antibodies were added to the mixture, and the shift was examined. Upon the addition of the clone 34 antibody, three different cases were observed: 1) a fraction of DNA-H10 complex interacts with the antibody and is super-shifted (Fig. 3A, WT panels, lanes +H10+Ab); 2) a fraction of DNA-H10 complex is not recognized by the antibody; and 3) a fraction is dissociated as indicated by the release of free DNA.


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Fig. 3.   Binding of H10 to four-way junction DNA and the recognition of the complex by the clone 27 and 34 antibodies. A, 32P-labeled four-way junction DNA was incubated with wild type H10 (WT) or the indicated mutants (+H10 lane), and the indicated antibody is added (+H10+Ab lane). Complexes were analyzed in 4% polyacrylamide gel. Antibody used for the analysis is indicated above each panel. WT, -10, and -20 represent the wild type H10 and the delta 10 and delta 20 mutants. B, the same experiment as above was carried out except that the Pro-Val and the delta 24-30 mutant were used, and the ability of the antibodies to supershift and dissociate the complex was analyzed (+H10+Ab34 and +H10+Ab27, respectively).

To discover whether the N-terminal tail of the protein can influence the recognition and the dissociation of the H10-four-way junction DNA complex by these antibodies, we used H10 mutant lacking the 10 and 20 AA from the N-terminal end of the protein. The removal of the N-terminal 10 or 20 AA facilitated the dissociation of the H10-DNA complex by the clone 34 antibody without significantly increasing the amount of supershifted materials (Fig. 3A, 34B10H4, panels -10 and -20, lanes +H10+Ab). Conversely, these mutations affected the formation of the ternary complex by the clone 27 antibody. Indeed, a decrease in the amount of the super-shifted material is observed (Fig. 3A, 27E8E10, panels -10 and -20, lanes +H10+Ab). Moreover, the dissociation of the H10-DNA complex by this antibody is also less efficient. As a control, we show that when the proline-valine mutant is used, clone 27 antibody is not able to supershift the complex nor to dissociate it, whereas clone 34 antibody (which is able to recognize this protein) supershifts and dissociates the complex (Fig. 3B, panel Pro-Val, lanes +H10+Ab34 and +H10+Ab27). The delta 24-30 mutant is able to interact with the DNA, but the addition of the described antibodies does not affect the H10-DNA complex. The use of these mutants showed also that the supershifted materials observed upon the addition of antibodies is highly dependent on the nature of H10 and is not due to the association of DNA with the antibody or some other components present in the reaction. These observations suggest that the shortening of the N-terminal part of the protein, nonessential for the recognition of the free protein, renders the dissociation of the complex by the clone 34 antibody more efficient, although it does not significantly affect that mediated by the clone 27 antibody.

Differential Recognition of H10 within Chromatin during the Induced Differentiation of MEL Cells-- MEL cells are virus-transformed erythroid precursors able to undergo a differentiation program under the action of a large variety of chemical inducers (30). We used this differentiation model to monitor H10 recognition by our antibodies during cell differentiation. Uninduced MEL cells or cells treated with the inducer (4 mM hexamethylene-bis-acetamide) for 6, 8, 16, 24, 32, and 48 h were fixed, and the immunofluorescence was monitored by flow cytofluorimetry after immunostaining with clone 27 and 34 antibodies. In uninduced MEL cells, whereas H10 is efficiently recognized by the clone 34 antibody, the protein is not recognized by clone 27 antibody (Fig. 4A, 0 h). In these cells, clone 27 antibody-related immunofluorescence corresponds to the background fluorescence, which is observed when anti-H10 antibody is omitted (not shown).


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Fig. 4.   Flow cytofluorimetric analysis of the recognition of H10 by the two antibodies during the induced differentiation process in MEL cells. A, histograms show the clone 27 and 34 antibody-related immunofluorescence (upper and lower panels, respectively) recorded from uninduced cells (0 h) or cells induced for indicated times with 4 mM hexamethylene-bis-acetamide. Each histogram corresponds to the analysis of 10,000 cells (y axis). B, RNA samples prepared from cells taken at the indicated time after the induced differentiation were analyzed according to the Northern blot procedure. The blot was hybridized with alpha -globin and GAPDH probe, respectively. C, effect of the salt-induced modification of the chromatin structure on the recognition of H10 by the two antibodies. Nuclei were isolated from the uninduced cells and incubated for 30 min in a buffer containing the indicated concentration of NaCl. They were then subjected to immunostaining and analyzed as above.

Clone 34 antibody-related immunofluorescence intensity changes between 0 and 6 h after induction (Fig. 4A, 6 h; a broader distribution of the immunofluorescence is observed). An accumulation of the protein during this period (31) can contribute to this increase in immunofluorescence intensity. However, despite this accumulation of H10, clone 27 antibody is not able to detect the protein in chromatin after 6 h of induction (compare 0 and 6 h, Fig. 4A). An increase in clone 27 antibody-related immunofluorescence is visible after 8 h of induction characterized by a broader distribution of cells along the immunofluorescence axis. The onset of the differentiation program as judged by the initiation of alpha -globin mRNA accumulation is also observed after 8 h of induction (Fig. 4B). Another increase in the immunofluorescence intensity is observed between 32 and 48 h of induction, essentially visible for clone 27 antibody.

To know if the differential recognition of H10 by these antibodies described above is indicative of a modification of chromatin structure (a change of accessibility), we fixed nuclei isolated from uninduced MEL cells after incubation in a buffer containing increasing concentrations of NaCl and performed immunodetection of H10 as above. When nuclei were fixed after a treatment with 200 mM NaCl, a clear increase in the clone 34 antibody-related immunofluorescence is observed compared with nuclei fixed at 100 mM NaCl. Clone 27 antibody immunoreactivity did not change significantly in such conditions (Fig. 4C, 200 mM NaCl, note that the clone 34 and 27 antibody-related immunofluorescence was recorded at the basal level to better visualize the increase of the immunofluorescence intensity after the salt treatment). When the nuclei were prepared in the presence of 300 mM NaCl, the recognition of the protein by both antibodies is enhanced. These data indicate that the recognition of H10 in chromatin by clone 34 antibody is more sensitive to chromatin structure modification than that of the clone 27 antibody.

It would be interesting to know whether the differential recognition of the protein by these antibodies can also be observed on fractionated chromatin. Nuclei from both uninduced cells and cells induced for 48 h were digested by micrococcal nuclease, and chromatin fragments were fractionated on a sucrose gradient (Fig. 5A). A comparable amount of chromatin from each fraction was loaded on a filter in duplicate using a dot blot apparatus (Fig. 5B). One blot was incubated with clone 34 antibody, and the other was incubated with clone 27 antibody, and recognition of H10 was monitored by the ECL system. As a control, different amounts of purified H10 were also loaded on each filter (Fig. 5B, purified H10 panel). Fig. 5B shows that as expected the clone 27 antibody did not recognize the protein in chromatin of uninduced cells (27E8E10, 0 h lane), whereas the clone 34 antibody recognized the protein efficiently (34B10H4, 0 h lane). The purified protein was recognized with an equal efficiency by both antibodies (purified protein panel). Interestingly, 48 h after the induction of cell differentiation, clone 27 antibody was able to recognize H10 in the chromatin (27E8E10, 48 h lane). Signals corresponding to the recognition of the protein by clone 34 antibody is also more intense for this chromatin (34B10H4, compare the 48 h lane with the 0 h lane). The same blots were then washed, and the immunodetection of histone H1 was performed using polyclonal anti-H1 antibodies. Fig. 5B (anti-H1 panel) shows that histone H1 was recognized efficiently in each fraction and proved that a comparable amount of chromatin was loaded on the two blots.


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Fig. 5.   Differential recognition of H10 by the two antibodies in fractionated chromatin from undifferentiated MEL cells or cells induced to differentiate. A, chromatin obtained after the micrococcal nuclease digestion of the nuclei purified from MEL cells and cells induced for 48 h was fractionated on a sucrose gradient. Fractions were collected and DNA from each fraction was purified and analyzed on 1% agarose gels. B, equivalent amounts of oligonucleosomes (10 µg of chromatin) corresponding to the above fractions were dotted in duplicate, and an immunodetection using the two anti-H10 antibodies was carried out (anti-H10 panel). The same blots were then washed and another immunodetection was carried out using an anti-H1 antiserum (anti-H1 panel). As a control 5, 10, and 20 ng of purified H10 were loaded on the same membrane (purified H10 panel).

Modification of the H10 Recognition during the P53-mediated Arrest of Cell Proliferation-- Clone 6 cells are rat embryonic fibroblasts transformed by ras and a thermosensitive P53 mutant. At 37 °C, P53 is in a mutated conformation that is responsible for the appearance of a transformed phenotype. At 32 °C, P53 exhibits the property of the wild type protein and triggers an arrest of cell proliferation (15). We used this system to monitor H10 accessibility during this process. A flow cytofluorimetric analysis of H10 immunolabeling using clone 34 antibody was performed (Fig. 6A). H10 was detected by indirect immunofluorescence (y axis) and DNA by Hoechst fluorescence (x axis). DNA fluorescence reflects the position of cells in the cell cycle (G1 cells are around channel 60, G2 cells are found around channel 120, and S phase cells are in between). A general increase of H10 immunofluorescence is observed during the cell cycle indicating the normal doubling of cell constituents when cells accomplish DNA replication and enter the G2/M phases of the cell cycle (Fig. 6A, panel 37 °C). However, 8 h after the transfer of cells at 32 °C, a clear increase in the H10 immunofluorescence intensity was observed, specifically visible in the G2/M cell populations (32 °C panel, dot plot representation, compare 0 and 8 h). It is precisely in this phase of the cell cycle that the first accumulation of cells is observed (Fig. 6A, note the accumulation of cells in the G2/M phase of the cell cycle, 32 °C panel, 8 h histogram). After 16 h at 32 °C, these cells enter the G1 phase and stop proliferating. An increase in the H10 immunofluorescence is visible in these arrested cells (panel 32 °C, lane 16 h). After 24 h at 32 °C, almost all cells are in the G0/G1 phase of the cell cycle, and a clear increase of the H10 related immunofluorescence intensity is observed in these cells compared with the control cells kept at 37 °C (panel 32 °C, lane 24 h). Clone 27 antibody did not recognize H10 either in proliferating cells or in arrested cells (data not shown).


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Fig. 6.   Cell cycle-dependent modulation of the chromatin structure during the induced arrest of cell proliferation. Clone 6 cells expressing thermosensitive P53 were shifted to 32 °C for the indicated times (0, 8, 16, and 24 h), and the control cells were maintained at 37 °C during this period. A, flow cytofluorimetric analysis of the immunodetection of H10 was carried out as described in the legend of Fig. 4, except in this case cells are doubly stained for H10 by indirect immunofluorescence and for DNA with the DNA-specific dye Hoechst 33258. This method (dual analysis of cells by cytofluorimetry; dot plot representations shown in the left panel for each temperature) allows monitoring of H10 immunoreactivity as a function of the position of cells in the cell cycle. For each temperature, the modification of the cell cycle parameters as a function of time is visualized in histograms showed on the right side. These histograms represent the number of cells present at different positions in the cell cycle (DNA fluorescence). B and C, the induced arrest of cell proliferation is not associated with an increase in the amount of H10 encoding mRNA and protein. RNA prepared from cells maintained at 37 °C or shifted to 32 °C was analyzed according to the Northern blot procedure. The blot was probed with a H10, H4, or 28 S rRNA probe (B). Total H1 was extracted from proliferating cells (0 h) or after the shift of temperature (8, 16, and 24 h). Proteins were analyzed on SDS-15% polyacrylamide gels stained with Coomassie Blue and by Western blotting.

RNA was also prepared from these cells and used to obtain a Northern blot. The hybridization of the blot with a H10 probe showed that no significant variation in mRNA content can be observed during this process and that the hybridization with a H4 probe confirmed the kinetics of cell arrest at 32 °C observed by cytofluorimetric analysis (Fig. 6B).

The steady state level of H10 in proliferating cells (37 °C) or cells kept at 32 °C for different times did not show a significant variation (Fig. 6C), confirming the Northern blot data. The increase of the immunofluorescence observed is therefore essentially due to a modification of the immunoreactivity of H10 toward the clone 34 antibody during the arrest of cell proliferation.

Differential Pattern of H10 Immunolocalization by Clone 27 and Clone 34 Antibodies-- To know if the differential recognition of H10 by these antibodies correlates also with a specific pattern of immunodetection, we performed a microscopic analysis of immunolabeled nuclei. Xenopus embryos were first used in this experiment to examine the situation in an in vivo context. H10 accumulates relatively late during the Xenopus development, and the first detectable accumulation of the protein is tissue-specific, observed in the nervous tissue, somites, and the cement gland. Later during development, at tadpole stage, the accumulation of the protein was observed in many different tissues (10). The analysis of the immunolabeled cells observed on a section of the cement gland (for example, Fig. 7A, arrowhead) shows that nuclei are immunolabeled with both antibodies and that, moreover, foci could be observed in clone 27 antibody-immunolabeled nuclei (Fig. 7B, bottom left panel) in contrast to a relatively homogenous labeling for nuclei labeled by the clone 34 antibody. Nuclei of cells forming the neighboring tissue are negative for H10 detection (Fig. 7B, compare the anti-H10 column with the Hoechst column). The same pattern of immunofluorescence was observed when we examined the pattern of clone 27 and 34 antibody immunolabeling in nuclei of differentiated MEL (data not shown). These observations suggest that the recognition of H10 by clone 27 antibody occurs only on restricted regions that could be sites of specific chromatin remodeling.


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Fig. 7.   Immunostaining of H10 by the clone 27 and 34 antibodies in Xenopus embryos. A, Xenopus embryos were taken at the stage 36 of development and fixed, and cryosections were obtained. Two successive sections were subjected to immunostaining with the two anti-H10 antibodies and counterstained with Hoechst, which allows the detection of all nuclei (nuclei are shown from one section at low magnification). The white arrowhead shows the cement gland that is also shown at high magnification in B. B, consecutive 10-µm sections obtained from stage 36 embryos were used for the immunodetection of H10 by the clone 34 and 27 antibodies (left panels) and counterstained with the DNA-specific fluorochrome Hoechst 33258 (right panels).

    DISCUSSION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References

In this work we have precisely mapped a region of histone H10 located at the entry of the globular domain and involved in the recognition of the protein by two monoclonal antibodies. One of them, clone 34 antibody, recognizes the protein dependent on the AA 20-30 region. Recognition by the second antibody (clone 27 antibody) has been shown to be dependent on only 7 AA (AA 24-30) within this region. Moreover, an essential role of the proline 26 has been illustrated by site-directed mutagenesis. Indeed, the replacement of this proline by a valine completely abolished the recognition of the protein. These data suggest that the proline-mediated structure is important for the recognition of the protein by this antibody. Interestingly, this antibody does not recognize H10 within the chromatin of undifferentiated MEL cells. However, after the commitment in the differentiation program, H10 becomes recognizable. The AA 20-30-dependent recognition of the protein by clone 34 antibody is efficient in uninduced as well as in differentiated MEL cells.

Two explanations can be proposed for the differential recognition of H10 by the clone 27 antibody during cell differentiation. First, modification of the chromatin structure in differentiated cells can render H10 accessible to this antibody. However, clone 34 antibody, for which the recognition of H10 is also highly dependent on the AA 24-30 region, binds the protein in uninduced cells as well as in differentiated cells. Therefore, a simple modification of the accessibility of the 24-30 region cannot satisfactorily account for the differentiation-dependent reactivity of H10 toward the clone 27 antibody. The proline-valine replacement experiment suggests that recognition by clone 27 antibody could be dependent on a structure in the AA 24-30 region. Therefore, a modification of the structure of the N-terminal domain of H10 occurring during the induced differentiation of MEL cells could be a reason for the observed differential recognition by the clone 27 antibody.

The importance of the N-terminal tail of H10 in the recognition of the protein by our antibodies is also suggested by analyzing their ability to recognize H10-four-way junction DNA complex in vitro. At least two different kinds of H10-DNA complexes have been found. One is able to interact with the antibody and is supershifted in a gel retardation assay. In the rest of the population of H10-DNA complexes, the addition of the antibody creates a competition between the antibody and DNA for interaction with H10. This competition is accompanied with a release of DNA from the complex. The observed displacement of the DNA is enhanced when the N-terminal tail is shortened. The removal of 10 AA or the whole N-terminal tail domain (-20) facilitated greatly the displacement of DNA by the clone 34 antibody. This facilitated displacement could be due to a decrease in the strength of DNA-protein interaction or to a better recognition of the protein by the antibody. The first possibility is unlikely because the removal of 10 AA, although it dramatically increases the dissociation of the H10-DNA complex, does not eliminate any of the 58 lysine/arginine residues present in the protein or any of the conserved residues showed to be involved in the interaction of H1 with DNA (29). Moreover, the shortening of the N-terminal tail domain does not affect the clone 27 antibody-dependent dissociation of the complex. However, it influences the formation of the ternary complex.

These data suggest that the N-terminal tail domain of histone H10, which is nonessential for the recognition of the free protein by our antibodies, can influence the protein recognition when it interacts with DNA and strengthens the possibility of a differential recognition of the protein in chromatin due to a modification of the N-terminal tail conformation during critical stages of cell life.

A different pattern of the immunolabeling is also observed when we compared clone 34 and clone 27 antibody immunostained nuclei. Clone 27 antibody is able to reveal foci of immunoreactivity within the nuclei. Under the same conditions clone 34 antibody shows a more homogenous nuclear labeling. The appearance of foci after the immunolabeling by clone 27 antibody is observed in different Xenopus tissues, as well as in cells in culture (not shown). Because in MEL cells, labeling by clone 27 antibody is differentiation-dependent, one can assume that these foci of H10 immunolabeling correspond to sites of specific chromatin remodeling, rendering the N-terminal part of H10 recognizable by the clone 27 antibody.

The salt treatment experiment (Fig. 4C) showed that the recognition of H10 by clone 34 antibody is more sensitive to modification of chromatin structure than that of clone 27 antibody. Clone 34 antibody shows an enhanced H10 recognition after the P53-mediated arrest of cell proliferation, whereas in these cells (cycling or arrested), H10 is not recognized by clone 27 antibody. These observations suggest that chromatin remodeling events of a different nature are associated with cell arrest and differentiation.

Several reports described the use of monoclonal and polyclonal antibodies raised against different parts of histone H1, H5, and H10, as well as the use of immobilized proteases to investigate the accessibility of the linker histones in chromatin. The majority of these works showed a lower accessibility of the globular domain compared with the N- and C-terminal tail domains of linker histone in the chromatin (32, 33). Therefore, recognition of H1s by antibodies raised against the globular domain of the protein are expected to be much more sensitive to different chromatin remodeling events than that of antibodies raised against tail domains. The work presented here shows that modifications of the chromatin structure occur at precise periods during different important cellular events, such as the commitment of cells in a particular differentiation program or the arrest of cell proliferation. The clone 27 antibody can immunolabel H10 in MEL cells precisely at the onset of alpha -globin gene expression during the induced differentiation. This observation shows that a modification of the chromatin structure occurs concomitant with the reinitiation of erythropoiesis. The clone 34 antibody allowed us to show a modification of the chromatin structure occurring during a restricted period of the cell cycle before the arrest of cell proliferation. The described antibodies therefore seem to be valuable tools for monitoring precise timing of chromatin remodeling associated with different regulatory events controlling the cell fate and enable investigation of these modifications in more detail.

    ACKNOWLEDGEMENTS

We are grateful to Dr. Jean Jacques Lawrence, the head of INSERM U309, for supporting this work and to Drs. Stefan Dimitrov and Kym Duncliffe for critical reading of the manuscript. We are also grateful to Dr. C. Gache for providing us with sea urchins.

    FOOTNOTES

* The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Dagger To whom correspondence should be addressed. Tel.: 33-4-76-54-95-83; Fax: 33-4-76-54-95-95; E-mail: khochbin{at}ujf-grenoble.fr.

1 The abbreviations used are: MEL, murine erythroleukemia; AA, amino acid(s).

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Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References

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