A Trace Amount of the Human Pro-apoptotic Factor Bax Induces Bacterial Death Accompanied by Damage of DNA*

Sadamitsu Asoh, Kiyomi Nishimaki, Rika Nanbu-WakaoDagger , and Shigeo Ohta§

From the Department of Biochemistry and Cell Biology, Institute of Gerontology, Nippon Medical School, 1-396, Kosugi-cho, Nakahara-ku, Kawasaki-city, Kanagawa 211-0063, Japan

    ABSTRACT
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Abstract
Introduction
Materials & Methods
Results
Discussion
References

An amount of human pro-apoptotic Bax as low as 0.01% of total protein was sufficient to cause cell death in Escherichia coli. The bacterial cell death was examined using a viable bacteria-specific fluorescence indicator system and loss of colony formation ability. Co-expression of anti-apoptotic Bcl-xL showed a modest inhibitory effect on the cell death caused by Bax. The trace amount of Bax elongated E. coli and accumulated monounsaturated fatty acids, suggesting an unusual metabolism of redox in the host. In fact, an increase of KCN-dependent O2 consumption accompanied the expression of Bax. At the same time, a fluorescent pH indicator showed the apparent accumulation of protons outside the cell, suggesting that the membrane is intact. Bax increased the level of superoxide anion as measured by the expression of superoxide-dependent promoter. Nicked DNA was significantly generated, and the frequency of mutations resistant to rifampicin was increased by 30-fold, depending upon the expression of Bax. It is proposed that trace amounts of Bax increase oxygen consumption, triggering generation of superoxide, which affects DNA, leading to bacterial death.

    INTRODUCTION
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Abstract
Introduction
Materials & Methods
Results
Discussion
References

Apoptosis in multicellular organisms is an active cellular self-destruction that is directed by genes. It is not only a physiologically important process in tissue homeostasis and developmental elimination but also a final defense against viral infection and the emergence of cancer (1-5).

Bcl-2 protects cells from apoptosis induced by a wide variety of stimuli, including radiation, growth factor deprivation, free radicals, alterations in Ca2+, viral infection, chemotherapeutic drugs, and axotomy (6). Its related proteins, the Bcl-2 family, regulate apoptosis by interacting one with each other (7). Members of the Bcl-2 family are functionally classified into two groups (8, 9). The first group, including Bcl-2, Bcl-xL, Mcl-1, and A1, suppresses apoptosis. In contrast, the second group, including Bax, Bak, Bad, Bik, Bcl-xbeta , and Bcl-xS, promotes apoptosis.

Bax is a 21-kDa membrane protein with a membrane anchor sequence at the C terminus and promotes apoptosis (10). Bax has three conserved motifs, BH1, BH2 and BH3, which are conserved among several members of the Bcl-2 family (11, 12). Overexpression of Bax countered the death-protecting activity of Bcl-2 and accelerated apoptosis of pro-B cells induced by interleukin-3 withdrawal, whose rates were affected by the ratio of Bax to Bcl-2 (10). Bax forms a heterodimer with Bcl-2 (10). Yeast two-hybrid assays showed that Bax can also bind to the apoptosis-suppressing factors, Bcl-xL, Mcl-1, and A1 (13, 14). Reversely, Bcl-2 and Bcl-xL can bind to the apoptosis-accelerating factors, Bcl-xS (13, 14), Bak (15), Bik (11, 12), and Bad (13, 14). A set of complex and selective interactions among apoptosis-suppressing and apoptosis-accelerating factors appears to dictate the fate of the cell, survival or death following an apoptotic stimulus (14).

Bax expression in the budding yeast Saccharomyces cerevisiae caused cell death (13, 16). Dimerization and targeting to mitochondrial membrane appear to be essential for Bax to exert cytotoxicity in both yeast and mammalian cells (17). Recently Bak as well as Bax induced cell death when expressed in the fission yeast Schizosaccharomyces pombe (18). Co-expression of anti-apoptotic proteins Bcl-2, Bcl-xL, or Mcl-1 abolished the cytotoxicity of Bax or Bak in yeast cells (13, 16, 18, 19). Bax/Bak-induced cell death of yeast partially resembled Bax-induced apoptosis of mammalian cells regarding dead cell phenotype (18). Inducible expression of Bax in mammalian Jurkat T cells initiated apoptosis without an extra death stimulus (20). This process accompanied the generation of reactive oxygen species (ROS),1 and decrease of mitochondrial membrane potential (20). The cell-killing activity of Bax appears to function in biological systems ranging from eukaryotic unicellular organisms to mammalian cells.

We found that an Escherichia coli cell transformed with a prokaryote expression vector carrying mammalian bax or bak cDNAs grew poorly in solid and liquid media. To biochemically investigate the function(s) of Bax in detail, we have chosen this organism as a Bax-expressing host, because there is no report that E. coli has endogenous bcl-2-related genes for interaction with Bax. Here, we present that a trace expression of Bax kills E. coli cells and that this process includes many physiological changes with regard to monounsaturated fatty acid composition, dioxygen consumption, generation of reactive oxygen species, and nicked DNA.

    MATERIALS AND METHODS
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Abstract
Introduction
Materials & Methods
Results
Discussion
References

Bacterial Cells, Medium, and Culture-- E. coli strains DH5alpha MCR F- mcrA Delta (mrr-hsdRMS-mcrBC) phi 80dlacZDelta M15 Delta (lacZYA-argF)U169 endA1 recA1 deoR thi-1 supE44 lambda - gyrA96 relA1 (Life Technologies, Inc.), BL21(DE3) F- dcm ompT hsdS(rB- mB-) gal lambda (DE3) (Stratagene), and a SOD mutant QC774 F- Delta lac4169 rpsL Phi (sodA-lacZ)49 Phi (sodB-kan)1-Delta 2 Cmr Kmr (21), a kind gift from Dr. Yonei of Kyoto University, Faculty of Science, were used. Media used were as follows: L-broth containing 10 g of tryptone, 5 g of yeast extract, and 5 g of NaCl per liter; L-broth solidified by 1.5% Bacto agar (L-plate); M9CA medium containing 42 mM Na2HPO4, 22 mM KH2PO4, 9 mM NaCl, 19 mM NH4Cl, 2 mM MgSO4, 0.1 mM CaCl2, and 0.2% glucose, supplemented with 0.2% casamino acids. Ampicillin (Ap) and chloramphenicol were added at 50 and 25 µg/ml, respectively.

Cloning of Mammalian bax and bak cDNAs and Expression of Mammalian Apoptotic Factors in E. coli Cells-- Human bax cDNA was synthesized and amplified from poly(A)+ RNA (QuickPrep Micro mRNA purification kit, Amersham Pharmacia Biotech) of human B cell derivatives by PCR with a pair of primers, 5'-NNAGATCTNNCATATGGACGGGTCCGGGGAGCA-3' and 5'-CCGAATTCAGCCCATCTTCTTCCAGAT-3'. Mouse bak cDNA was synthesized and amplified from poly(A)+ RNA of mouse (BALB/c, 5 weeks old) thymus by PCR with a pair of primers, 5'-NNNGGATCCATATGGCTTCGGGGCAAGG-3' and 5'-NNNGAATTCATGATTTGAAGAATCTTC-3'. The PCR product of bax cDNA was digested with a combination of NdeI and EcoRI, or BglII and EcoRI, and cloned into the NdeI/EcoRI-digested pProEX-1 (histidine-tagged, Life Technologies, Inc.) or BamHI/EcoRI-digested pGEX-3X (glutathione S-transferase fusion, Amersham Pharmacia Biotech), respectively. For convenience, these vectors, pProEX-1 and pGEX-3X, are referred to as pHis and pGST, respectively, in this paper. The resultant constructs for expression of Bax were named pHis-bax and pGST-bax, respectively. The PCR product of bak cDNA was also digested with a combination of NdeI and EcoRI, or BamHI and EcoRI, and then cloned into NdeI/EcoRI-digested pHis or BamHI/EcoRI-digested pGST to give pHis-bak or pGST-bak, respectively. The amino acid sequence deduced from the cloned bax cDNA has one substitution of Leu59 to Pro59, compared with the published amino acid sequence (10). When this cDNA was introduced into mammalian cell FDC-P1, this version of Bax accelerated apoptosis induced by interleukin-3 withdrawal (22). The DNA sequence of the bak cDNA cloned was confirmed. A rat bcl-xL cDNA (23) was inserted into pHis to give pHis-bcl-x, like pHis-bax. The bcl-x cDNA was also tandemly inserted into the XhoI site downstream of the bax coding region in pHis-bax to give pHis-bax/bcl-x. In this construct, the bax and bcl-x coding regions should be transcribed in a polycistronic mRNA. To subclone the bax cDNA into the vector pACYC184 (24), pHis-bax was digested with SphI. A fragment containing the lacIq gene, the trc promoter, and the bax cDNA was inserted at the SphI site of pACYC184, which is located in the tetracycline resistance gene. The construct was named pACYC-bax. To express two mutant Bax versions as described by Simonian et al. (25), pACYC-baxGD67-68 and pACYC-baxDelta 63-71 were constructed by a two-step PCR mutagenesis method (26). Expression of Bcl-x with the C-terminal hydrophobic region deleted (Bcl-xG196) from a plasmid pROG196 was directed by the T7 RNA polymerase promoter as described by Aritomi et al. (27). Induction of the polymerase with IPTG in BL21(DE3) cells allows the expression of genes placed downstream of the T7 RNA polymerase promoter.

Plasmid Preparation-- Since the plasmid containing cDNA of bax was easily mutated after overgrowth of the host, the transformant was picked from a small colony, grown in a rich L-broth medium containing 20 mM glucose and harvested before a stationary state to prepare the plasmid.

Viability Assay-- DH5alpha MCR cells were transformed with the indicated plasmids and incubated on L-plates containing Ap for 16 h at 37 °C. After enumerating the colonies, Ap-resistant transformants on the plate were harvested and pooled in L-broth. To asses colony-forming ability, a number of cells was microscopically examined with a hemacytometer for bacteria. The cell suspensions were adequately diluted and spread on fresh L-plates with Ap and the number of colonies were counted on the following day. For the fluorescence analysis of viability, the cells in the pooled cell suspension were counted and treated with LIVE/DEAD BacLightTM bacterial viability kits (L-7012) according to the protocol provided by the supplier (Molecular Probes).

Detection of the Bax Protein-- DH5alpha MCR cells carrying the vector or pHis-bax were cultured in L-broth. The cells were harvested, washed, and disrupted by sonication in a solution containing 6 M urea and 2% SDS. Solubilized proteins were separated by SDS-polyacrylamide gel electrophoresis and transferred onto a polyvinylidene difluoride membrane. The membrane was treated with anti-Bax polyclonal antibody N-20 (Santa Cruz Biotechnology), then incubated with a peroxidase-conjugated anti-rabbit IgG (Cappel). Bax was visualized by a chemiluminescence method using RENAISSANCETM (NEN Life Science Products). To obtain the purified Bax protein as a standard, Bax with (His)6 tag was expressed in E. coli for 30 min by adding an inducer, IPTG, to 1 mM. The expressed Bax was purified by nickel column chromatography, followed by gel filtration. The purified protein was identified by Western blotting using the anti-Bax antibody. The Bax was eluated in the fractions corresponding to 50 kDa by gel filtration chromatography.

Scanning Electron Microscopy-- Scanning electron microscopy was performed by a conventional method. E. coli cell DH5alpha MCR cells harboring the vector or pHis-bax was cultured in L-broth. The cells were applied on isopore track-etched membrane filters (Millipore) at A600 = 0.3 (1.4 × 108 cells/ml). After washing with phosphate-buffered saline, the filters with cells were immersed in 2.5% glutaraldehyde. The cells were dried by a critical point drying method after dehydration with ethanol. The cells were coated with gold and observed with JSM-T20 (JEOL, Tokyo).

Fatty Acid Composition-- DH5alpha MCR cells carrying pHis-bax or the vector were cultured in L-broth for 2.5 h at 37 °C after cessation of growth. The washed cells were freeze-dried. According to a conventional method, fatty acid methyl esters were extracted by hexane following methanolysis (28). The extracts were analyzed with a gas-mass spectrometer GCMS QP5000 (Shimazu, Kyoto).

Oxygen Consumption-- DH5alpha MCR cells harboring the vector or pHis-bax were inoculated in L-broth containing Ap at A600 of 0.01 and grown with vigorous shaking at 37 °C. Aliquots of the culture were removed for measuring A600 and dioxygen (O2) consumption at various times. O2 consumption was determined by an oxygen electrode method using MD-1000 (Iijima Electronics Mfg. Co, Ltd., Tokyo) with a water jacket at 37 °C. In each experiment, the recorder was adjusted using a sodium sulfite solution and air-saturated water (Milli-Q, Millipore) at 37 °C. The decreasing rate of oxygen in the medium was normalized against bacterial number at each measuring point. A normalized value was represented as relative O2 consumption.

Measurement of pH Inside Cells by DCF-DA-- A membrane-permeable fluorescent dye, DCF-DA (LAMBDA, Graz, Austria) was applied to cells as follows. DH5alpha MCR cells harboring the vector or pHis-bax were cultured in a M9CA medium containing Ap with shaking at 37 °C. At A600 = 0.1, IPTG (30 µM) was added to induce Bax expression, and immediately an aliquot of the culture (1 ml) was removed (incubation time = 0). The remaining culture was further shaken with IPTG for 15, 30, 45, and 60 min, and at each incubation time, 1 ml of culture was removed. The 1-ml aliquot was added to DCF-DA (5 µM) and stood at 37 °C for 15 min. After being washed with phosphate-buffered saline twice, the cells were suspended in phosphate-buffered saline at A600 of 0.1 and analyzed with a fluorescence spectrophotometer F-3000 (Hitachi, Tokyo).

Detection of Superoxide by a sodA-lacZ Fusion Gene-- SOD mutant QC774sodA-lacZ sodB-kan cells containing pHis-bax were anaerobically cultured at 37 °C in the container used for O2 consumption experiments, while monitoring O2 levels. The cells were inoculated into L-broth supplemented with 50 mM glucose, 20 mM KNO3, and ampicillin at 0.004 of A600. The cell suspension was then blown with nitrogen gas to remove O2. Following a lag time of about 1 h, the cells grew with a doubling time of around 20 min until 0.08 of A600, during which O2 levels were undetectable. IPTG (10 µM) was added, and after 30 min, the cells (1 ml) were cooled, harvested, and washed. The cells were resuspended in 0.1 M potassium phosphate buffer, pH 7.8, containing 1 mM dithiothreitol. After addition of lysozyme, the cells were disrupted by freezing and thawing. Following DNase I treatment, the cell extracts (50 µl) were prepared by centrifugation to precipitate debris. Two microliters of 10- and 100-fold diluted cell extracts were subjected to Galacto-Light chemiluminescent assay for beta -galactosidase (Tropix, Bedford, MA) using a luminometer, Lumat LB9507 (Berthold). Under aerobic conditions, the cells with pHis-bax were grown in L-broth containing 10 mM glucose and ampicillin with vigorous shaking. IPTG (1 µM) was added at 0.2 of A600, followed by the same procedure mentioned above.

Detection of Nicked DNA-- DH5alpha MCR cells carrying pHis-bax or the vector were cultured in L-broth at 37 °C. The cells were incubated for indicated periods at the stationary phase. Harvested cells were lysed with 1 N NaOH. During incubation at room temperature, DNA was denatured, and DNA strands with nicks were separated from intact DNA by ultracentrifugation (100,000 × g, 1 h). Denatured single strands of DNA were precipitated by ethanol and dissolved in TE buffer. After RNase A treatment, DNA samples were precipitated with isopropyl alcohol and dissolved in TE buffer (10 mM Tris · Cl, pH 7.4, 1 mM EDTA, pH 8.0) (1 µl per 0.1 A600 unit). One microliter was subjected to alkaline-agarose gel electrophoresis followed by blotting to a nylon membrane Hybond-N+ (Amersham Pharmacia Biotech). A 32P-labeled probe was prepared by an oligo-random labeling kit (Amersham Pharmacia Biotech) using genomic DNA of DH5alpha MCR as a template. Hybridization was performed in a Rapid-hyb buffer (Amersham Pharmacia Biotech) at 65 °C. The membrane was washed twice with 0.1 × SSC containing 0.1% SDS at 65 °C and exposed to an imaging plate for analysis by a bioimaging analyzer BAS1500 (Fuji Film, Ltd., Tokyo). The image was visualized by Pictrography (Fuji Film, Ltd.).

Frequency of Rifampicin-resistant Mutants-- DH5alpha MCR cells were transformed with the vector or pHis-bax and plated on L-broth plates with Ap. After incubation for 16 h at 37 °C, the transformants from the Ap-resistant colonies were mixed. The cells (1 × 109 or 100) were spread on L-plates containing Ap with or without rifampicin (Rif; 50 µM), respectively. The frequency of Rif-resistant mutants was represented as the ratio of the number of colonies in the presence of Rif to that in the absence of Rif.

    RESULTS
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Abstract
Introduction
Materials & Methods
Results
Discussion
References

A Trace Amount of Bax Causes Cell Death in E. coli-- We constructed inducible expression plasmids to overexpress the mammalian apoptosis regulatory factors, Bax, Bak, and Bcl-xL in E. coli. During the studies, the cDNAs of bax and bak were found to make smaller colonies than the vectors alone, even in the absence of an inducer, IPTG in E. coli (Fig. 1A). On the other hand, the introduction of bcl-xL cDNA, the anti-apoptotic factor, resulted in the same sized colonies as transformants of vectors alone. Regardless of the expression vector, pHis (pProEX-1; see "Materials and Methods") or pGST (pGEX-3X; see "Materials and Methods"), the same results were obtained. These results indicate that small colonies are formed by the expression of the mammalian pro-apoptotic factors. Since the vector harbors the repressor lacIq gene, the expression should be limited in the absence of the inducer. It was difficult to maintain the transformants forming the small colony, because suppressor mutant cells easily appeared. Thus, in each experiment, the transformants were freshly obtained by introduction of each plasmid into competent cells.


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Fig. 1.   The mammalian pro-apoptotic factors Bax and Bak kill the host bacteria. A, colonies of transformants with various cDNAs of the bcl-2 family members. DH5alpha MCR E. coli cells were transformed with bacterial expression vectors pHis (His) and pGST (GST), and their derivatives (H- and G-) carrying cDNAs of the Bcl-2 family members, Bax, Bak, and Bcl-xL. The transformants on L-plates without any inducer were incubated for 16 h at 37 °C to form colonies. H-bak, H-bcl-x, H-bax, and His (left) indicate colonies of the transformants with pHis-bak, pHis-bcl-xL, pHis-bax, and the empty vector pHis, respectively. G- and GST (right) indicate colonies with the cDNAs inserted into pGST and the empty vector pGST, respectively. B, total and viable cell numbers of the transformants per colony. DH5alpha MCR was transformed with the vector pHis (control), pHis-bax (bax), or pHis-bax/bcl-x (bax/bcl-x) to obtain 100-200 Apr transformants per plate. After incubation for 16 h at 37 °C on the plate, cells from the colonies were pooled, and the total cell number was counted using a microscope in a hemacytometer of 0.02 mm in depth (left dotted bar = total cell number per colony). The cells were then diluted and spread on fresh plates with ampicillin to count viable cell numbers (right hatched bar = viable cell number per colony). C, profiles of fluorescence spectra of viable bacteria. The pooled cells harvested from the colonies in B were treated with fluorescent dyes from a LIVE/DEAD BacLightTM bacterial viability kit (Molecular Probe) to determine the population of living cells. Fluorescence intensity was normalized by each cell number. Control, bax and bax/bcl-x indicate transformants with empty vector pHis, pHis-bax, and pHis-bax/bcl-x. Dead cells (indicated as dead cell) were obtained by treatment of 70% propanol.

It was confirmed by two methods that the small colony size was due to cell death. The first method involved colony formation ability, the second, a viable bacteria specific fluorescent indicator system as an indicator of dead or living cells. An E. coli cell DH5alpha MCR was transformed with the vector or pHis-bax. Cells from these colonies were mixed and enumerated using a microscope. Diluted cell suspension was then plated on L-plates to determine the number of viable cells forming colonies. The total cell number per colony of the cells with pHis-bax was one-sixth of that of the cells with the empty vector, and counting of viable cell numbers on L-plate revealed that half of the cells with pHis-bax were not viable whereas almost all cells with the empty vector were viable (Fig. 1B). The transformants pooled from the mixed colonies were treated with fluorescent dyes of a LIVE/DEAD BacLightTM bacterial viability kit (Fig. 1C). The transformants with the empty vector gave strong fluorescence at 540 nm, which is specific to living cells, while dead cells, which were prepared by 70% propanol treatment, did not. The cells with pHis-bax gave moderate signals, indicating that half of the cells from the tiny colonies were dead. Co-expression of Bcl-xL with Bax partially inhibited the effect of Bax cytotoxicity (Fig. 1, B and C), where the bcl-xL and bax cDNAs were transcribed in a polycistronic manner. To assess the inhibitory effect of Bcl-xL, the bax cDNA was subcloned into pACYC184, which is compatible with pUC-derived vectors and a low copy number plasmid. BL21(DE3) cells carrying pROG196 encoding Bcl-xG196 lacking the C-terminal transmembrane region (27) or the empty vector were transformed with pACYC-bax. The expression level of Bcl-xG196 was expected to be higher than that of Bax by IPTG induction because of their copy numbers of the plasmids and of the stronger promoter system. The cells expressing both Bcl-xG196 and Bax formed colonies but the cells expressing only Bax did not (Fig. 2, top). Two BH3 mutant Bax proteins were examined, because Bax requires BH3 to form heterodimers with Bcl-xL (25). The first mutant BaxGD67-68 has two alanine substitutions of glycine 67 and aspartic acid 68 in BH3 and still maintains the ability to interact with Bcl-xL (25). The cytotoxicity due to this Bax mutant (BaxGD67-68) was antagonized by Bcl-xG196 (Fig. 2, middle). In contrast, the second mutant BaxDelta 63-71, which deletes amino acids 63 to 71 in BH3, cannot interact with Bcl-xL (25). BaxDelta 63-71 was shown to be cytotoxic to the cells, regardless of the expression of Bcl-xG196 (Fig. 2, bottom). Thus, Bcl-xL modestly inhibits the cell death by antagonizing Bax in bacterial cells as well as mammalian cells.


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Fig. 2.   Cytotoxicity caused by Bax was antagonized by Bcl-xL. Competent cells were prepared from BL21(DE3) harboring pROG196 encoding truncated Bcl-xL without the C-terminal hydrophobic region (Met1 to Gly196) (right = bcl-x/) or the empty vector (left = -/). These plasmids have an ampicillin-resistant gene and a DNA replication origin derived from a pUC vector. These cells were again transformed with pACYC184-derived constructs, which have a chloramphenicol-resistant gene and a p15A replication origin compatible with pUC-derived vectors. The transformants were incubated on L-plates containing glucose (10 mM), ampicillin, chloramphenicol, and IPTG (60 µM) as an inducer for 20 h with pACYC-bax (top) and for 17 h with the others (middle and bottom), respectively. Top, middle, and bottom pictures indicate colonies of transformants with pACYC-bax encoding wild-type Bax, pACYC-baxGD67-68, which have two alanine substitutions of Gly67 and Asp68 in BH3, and pACYC-baxDelta 63-71, which have a deletion in BH3 (amino acids 63-71), respectively.

When an E. coli cell, DH5alpha MCR, harboring pHis-bax was grown in L-broth aerobically at 37 °C, cell growth was stopped at 3 × 108 cells/ml, corresponding to A600 = 0.6 (a stationary phase) (Fig. 3A). The density of the bacteria was determined by direct counting under a microscope, while DH5alpha MCR carrying the empty vector stopped growth at 6 × 109 cells/ml. Again, when bcl-xL was tandemly located downstream of bax, co-expression of Bcl-xL somewhat inhibited the Bax cytotoxicity (Fig. 3A). A Western blot analysis revealed that the cells carrying pHis-bax expressed a trace of Bax before reaching the stationary phase (Fig. 3B), although these cells were not treated with IPTG to induce an expression of Bax. The amount of Bax expressed was calculated to be 0.01% of total E. coli protein by comparing the bands with those of the purified Bax protein. This content corresponds to approximately 1,000 molecules of Bax in one E. coli cell. These results showed that a trace of Bax is cytotoxic to E. coli cells, resulting in death.


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Fig. 3.   Growth curve of DH5alpha MCR cells harboring pHis-bax or pHis-bax/bcl-x and Bax expression. A, DH5alpha MCR cells harboring empty vector pHis (control), pHis-bax (bax), or pHis-bax/bcl-x (bax/bcl-x) were grown on L-plates at room temperature overnight, harvested, and inoculated into L-broth with Ap. The growth curve was taken with vigorous shaking at 37 °C. At each culture time, the cell number was counted under a microscope in a hemacytometer of 0.02 mm in depth. B, Western blotting of total proteins from the transformants at points marked as &cjs3485;, &cjs3486;, and &cjs3487; in A. The proteins (20 µg) were subjected to Western blot analysis using anti-Bax polyclonal antibody, and bands corresponding to Bax were visualized by a chemiluminescence method with a peroxidase-conjugated secondary antibody. In the right three lanes, indicated amounts of His-Bax purified by nickel-nitrilotriacetic acid resin and gel filtration were immunoblotted.

The morphology of the cells with pHis-bax at 1.4 × 108 cells/ml, corresponding to the &cjs3485; in Fig. 3A, were observed by scanning electron microscopy. The cells expressing the trace amount of Bax were unusually elongated compared with the control cells (Fig. 4).


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Fig. 4.   Morphology of E. coli expressing Bax. DH5alpha MCR cells were transformed with pHis (A) or pHis-bax (B) and cultured in L-broth. At 1.4 × 108 cells/ml (see Fig. 3), the cells were applied on isopore track-etched membrane filters and fixed by 2.5% glutaraldehyde. After coating the cells with gold, scanning electron microcopy was performed.

Fatty Acid Composition-- To explore the mechanism of cell death, fatty acid composition was examined. After a 2.5-h incubation at the stationary phase, the cells with pHis-bax or the vector were harvested. After hexane extracts of the cells following methanolysis, fatty acid methyl esters were analyzed by gas-mass spectrometry (Fig. 5). Fragmentation patterns of each compound separated by gas chromatography were searched in the National Institute of Standard and Technology reference data bases. The cells with pHis-bax increased C16 = 1 and C18 = 1 fatty acids by 8- and 4-fold, respectively, compared with those of the cells with the empty vector. Searches in the libraries identified C16 = 1 to be palmitoleic methyl ester, but C18 = 1 methyl ester is unknown with regard to the position of the double bond. On the whole, the Bax expression increased monounsaturated fatty acid composition by 6-fold from 6 to 36%. These findings suggest a specific change of the bacterial physiology was induced by the trace amount of Bax, probably due to the unusual reduction-oxidation system.


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Fig. 5.   Profiles of gass-mass spectra indicating fatty acid composition. DH5alpha MCR cells carrying pHis-bax (A, pHis-bax) or the empty vector (B, pHis(vector)) were cultured in L-broth for 2.5 h at 37 °C at the stationary phase. The washed cells were freeze-dried, and fatty acid methyl esters were extracted with hexane following methanolysis. The extracts were subjected to gas-mass spectrometry. Fragmentation patterns of each compound were searched in the National Institute of Standard and Technology reference data bases. C16 = 1 and C18 = 1 means monounsaturated fatty acids. Possible structures of C16 = 1 and C18 = 1 are drawn in the inset of A.

Increased Dioxygene Consumption by Bax Expression-- As the next step, oxygen consumption was examined during cell growth. The cells with pHis-bax showed that a relative increase in O2 consumption by 60% at the late log phase and then a rapid decrease just before entering the stationary phase (Fig. 6A). The cells with the empty vector consumed oxygen at a constant rate in the log phase, and this rate gradually decreased following entrance into the late log and stationary phases (Fig. 6B). O2 consumption was inhibited completely by addition of 1 mM KCN (data not shown), indicating that Bax activated an electron transport system directly or undirectly. To examine the effect by the activation of the electron transport system, a membrane-permeable fluorescent dye, DCF-DA (29, 30), was applied to the cells expressing Bax by IPTG induction. DCF-DA in cells is deacetylated and converted to DCF by esterase(s). DCF gives a strong fluorescence at 525 nm in a range of alkalic but not acidic pH. DH5alpha MCR with pHis-bax, which was incubated with IPTG for 15 min, expressed Bax at a detectable level, and the expression level of Bax increased to be maximized after a 45-min incubation with IPTG (Fig. 7A, inset). After IPTG treatment for indicated time, the cells were incubated with DCF-DA for 15 min. The relative fluorescence intensity of the cells at 525 nm became stronger depending on the expression levels of Bax (Fig. 7A). Under this condition, O2 consumption increased by 40-50% for an hour (data not shown). The cells carrying the empty vector did not give any increase of the fluorescent signal at 525 nm after the incubation with IPTG (Fig. 7B). These results indicated that the inside of the cells became more alkalic by the expression of Bax. A simple explanation for this is that Bax accelerated the electron transport system to pump protons out and that the membrane remained intact even on accumulation of unusual fatty acids.


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Fig. 6.   Increased dioxgen consumption by Bax expression. DH5alpha MCR cells were transformed with pHis-bax (A) or pHis (B) and cultured with vigorous shaking in L-broth at 37 °C. At each indicated culture time, 1 ml of culture was taken out to measure A at 600 nm and dioxgen consumption using an oxygen electrode. log, late log, and stationary indicate each growth phase as judged by the growth curve. The values were obtained from two independent experiments and represent an average of the rate of decrease in O2 levels in the medium normalized by the cell density.


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Fig. 7.   Fluorescence spectra indicating increased intracellular pH by Bax expression. DH5alpha MCR cells were transformed with pHis-bax (A) or pHis (B) and cultured in M9CA at 37 °C. After addition of IPTG (30 µM), the cells were incubated for 0 (trace c), 15 (trace d), 30 (trace e), 45 (trace f), and 60 (trace g) min. The IPTG-untreated cells (trace b) and IPTG-treated cells (traces c, d, e, f, and g) were then loaded with DCF-DA (5 µM) for 15 min. After washing, the cells were suspended at A600 = 0.1 and excited at 488 nm to take the fluorescence emission spectra. The cells that were not incubated with IPTG and DCF-DA were analyzed as a background (trace a). Inset in A, Western blot analysis of Bax expressed in the cells carrying pHis-bax for indicated periods after induction with IPTG (30 µM).

Increase of Superoxide Radicals by Bax Expression-- The increment of O2 consumption by Bax expression led us to speculate enhanced production of superoxide. Superoxide is converted to hydrogen peroxide by SOD (superoxide dismutase) in cells as the first step in protection cells from oxygen radicals. E. coli has two different genes responsible for SOD, sodA and sodB, which encode Mn-SOD and Fe-SOD, respectively. The sodA gene is inducible by superoxide (31, 32). A sodA sodB double mutant QC774 is completely devoid of SOD activity (21). Paraquat, a potential generator of superoxide, increases the sodA expression anaerobically when E. coli is cultured with nitrate as a terminal electron acceptor (33-35). QC774 has a mutation in the sodA gene where the endogenous promoter of the gene is fused with lacZ (21). QC774 cells harboring pHis-bax were anaerobically grown in L-broth supplied with glucose and potassium nitrate. beta -Galactosidase activity was enhanced 2-fold in cells treated with IPTG for 30 min compared with cells untreated with IPTG (Fig. 8A). Under aerobic conditions, induced Bax enhanced the promoter activity to some extent (Fig. 8B), probably because the background is relatively high. These results suggested that expression of Bax caused an increase of superoxide in cells.


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Fig. 8.   Increased generation of superoxide radicals by Bax expression. A, SOD mutant QC774sodA-lacZ sodB-kan cells containing pHis-bax were anaerobically cultured at 37 °C in L-broth supplemented with 50 mM glucose, 20 mM KNO3, and ampicillin and then IPTG was added to 10 µM. B, under aerobic condition, the cells were cultured in L-broth containing 10 mM glucose and ampicillin with vigorous shaking. IPTG was added to 1 µM. In each case, the cells were harvested after 30 min and disrupted by freezing and thawing. The crude extracts of the cells treated with or without IPTG were prepared by centrifugation to precipitate debris. Two microliters of 10- and 100-fold diluted cell extracts were subjected to chemiluminescent assays for beta -galactosidase as described under "Materials and Methods." The enzyme activities were normalized against the cell density.

Nicked DNAs and Mutants-- Generation of superoxide results in generation of other ROS. Damage of DNA was examined by two methods: by extent of degraded DNA and by the increase of the mutation frequency. The cells with pHis-bax or the empty vector were grown in L-broth. After various periods of incubation at the stationary phase, the cells were solubilized in a alkali solution. Denatured single-stranded DNAs were subjected to alkaline-agarose gel electrophoresis and detected by Southern blot analysis (Fig. 9). The cells with pHis-bax had markedly increased amounts of nicked DNA after 1 h in the stationary phase, while the cells with the empty vector did not. As the next criteria of damage of DNA, the frequency of mutations of the cells with pHis-bax was compared with that of the cells with the vector (Fig. 10). DH5alpha MCR cells carrying pHis-bax gave 63 rifampicin-resistant (Rifr) colonies per 1010 cells, while the cells harboring the empty vector gave 2.1 Rifr colonies per 1010 cells. Thus, Bax expression increased the frequency of DNA mutation by 30-fold. Taken together, trace amounts of Bax appear to kill bacteria by damaging the DNA.


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Fig. 9.   Increase in nicked DNAs by Bax expression. DH5alpha MCR cells were transformed with pHis-bax or pHis. After an overnight culture at room temperature on L-plates, the transformants were cultured in L-broth for 0, 30, and 60 min after reaching the stationary phase. The harvested cells were solubilized in 1 N NaOH. After ultracentrifugation at 100,000 × g for 1 h, denatured and short DNAs in the supernatants were recovered by ethanol precipitation and applied to an alkaline-agarose gel (1% gel). After blotting to a nylon membrane, single-stranded DNAs were detected by alpha -32P-labeled probe prepared by random priming using genomic DNA of E. coli as a template. Signals were visualized by an imaging analyzer, BAS 1500, and Pictrography.


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Fig. 10.   High frequency of mutagenesis by Bax expression. DH5alpha MCR cells were transformed with pHis-bax or pHis and cultured in L-plates with Ap at 37 °C for 16 h to obtain less than 200 colonies per L-plate. The pooled cells from the mixed colonies were spread on L-plate containing Ap with or without rifampicin (50 µM) after adequate dilution. The number of colonies on L-plates with or without Rif were counted. The frequency of Rifr mutants is represented as the number of Rifr colonies per 1 × 109 viable cells.

    DISCUSSION
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Abstract
Introduction
Materials & Methods
Results
Discussion
References

We reported here that a trace amount of the human Bax protein halted the growth and then caused the death of E. coli cells accompanied by some physiological changes, including increases in monounsaturated fatty acids, O2 consumption, superoxide radicals, nicked DNA, and the frequency of mutations. Bax easily mutated the host and plasmid DNA to give colonies of normal size. Therefore, so far, it might be difficult to find these phenomena.

It was shown that the Bax protein is lethal in S. cerevisiae and S. pombe (13, 16, 18). However, the amount of Bax expressed was not described. In the case of E. coli, a trace amount (0.01% of total protein) was sufficient to kill the host. Two criteria were applied to distinguish death from growth arrest: a viable bacteria-specific fluorescence dye system and a decrease of colony formation ability (Fig. 1). These results indicated that E. coli cells carrying pHis-bax are easily killed, and the process does not involve cell lysis. This death appears to be specifically caused by the mammalian pro-apoptotic factors, because Bcl-xL did not affect E. coli growth, unlike Bax and Bak. Bcl-xL had a modest inhibitory effect on Bax in E. coli. When Bcl-xL was expressed in excess of Bax, Bcl-xL effectively abolished the Bax cytotoxicity (Fig. 2). On the other hand, Bcl-xL antagonized the cytotoxicity to the less extent, when bcl-x was tandemly located downstream of bax (Figs. 1 and 3). In the latter, the expression of Bcl-xL was nearly the same as that of Bax and the trace amount (data not shown). Most of the Bax protein molecules in the cell could avoid association with Bcl-xL. Again, it was underscored that Bcl-xL inhibited the Bax cytotoxicity through an interaction with BH3 of Bax (Fig. 2) as shown in mammalian cells (25). In addition, we have recently identified the region of Bax lethal to E. coli and found that the region is responsible for inducing apoptosis (22).

During culture in L-broth, a trace of Bax protein was detected at 2 h before cessation of growth and the amount increased gradually with vigorous shaking (Fig. 3). At the point at which cell growth stopped, the amount of Bax expressed in a single cell corresponded to no more than 0.01% of total E. coli protein. It is well known that the depletion of glucose in medium elevates cAMP levels in cells to make a complex with a cAMP receptor protein. In turn, this complex can activate lac promoter. It is likely that depletion of glucose contained in yeast extract results in the expression of a trace amount of Bax protein.

Bax expression enhanced O2 consumption of E. coli cells by 60% for 45 min just before it completely stopped the growth (Fig. 6). Since KCN inhibited the O2 consumption, a respiratory chain was activated (data not shown). It is not likely that the Bax protein directly binds to oxygen to consume oxygen, because computer analysis showed that Bax does not share any motif with proteins which bind to dioxygene. It is unknown how Bax activates the respiratory chain. Enhanced generation of superoxide by Bax expression can be also explained by activation of the respiratory chain. Otherwise, a redox imbalance due to Fe2+ or NADPH depletion in cells may take place in response to Bax expression (36, 37).

Generation of superoxide results in high levels of ROS, including hydrogen peroxide and hydroxy radical, which are known to cause damage to DNA, proteins, and membranes. Enhanced conversion of superoxide to other ROS probably accounts for the increase of nicked DNA caused by Bax expression, although we could not detect any substantially damaged products such as 8-hydroxydeoxyguanosine and peroxidized lipid and any radicals by electron spin resonance spectrometry (data not shown).

It is very interesting that in cells expressing Bax, the composition of monounsaturated fatty acids increased 6-fold (Fig. 5). Some bacteria such as E. coli and Pseudomonas synthesize monounsaturated fatty acids via an anaerobic pathway, whereas in others, such as Bacillus and Corynebacterium, and in animals, synthesis is via an aerobic pathway (38). In the aerobic pathway, desaturase(s) uses oxygen molecules in a monooxygenase-type reaction. Bax expression may activate the enzymes involved in the synthesis of monounsaturated fatty acids in the anaerobic pathway. It is well known that the higher the content of unsaturated fatty acids, the more flexible the cell membrane. The cells expressing Bax were expected to be more sensitive to osmotic pressure. Scanning electron microscopy revealed that the cells expressing Bax enlarged along both axes (Fig. 4).

Recently the x-ray structures of renatured (39) and native (27) truncated Bcl-xL protein were resolved. The three-dimensional fold of Bcl-x is similar to that of the bacterial toxins diphtheria toxin and colicin A (27, 39). Like these bacterial toxins, Bcl-xL was also shown to form an ion channel in synthetic lipid membrane with selectivity for K+ and Na+ (40). These proteins appear to insert and be internalized into a membrane by a very similar multistep mechanism. Bax may insert into a membrane more easily than Bcl-xL, because Bax has a high sequence homology with Bcl-xL, and its expected hydrophobic cleft, formed by BH1, BH2 and BH3, is bigger than that of Bcl-xL (27). In addition, Bax structure lacks two hydrogen bonds stabilizing the central helices, suggesting that Bax possesses a greater potential for membrane insertion than either Bcl-2 or Bcl-xL (27). As expected, Bax has recently been shown to form an ion channel at neutral pH in synthetic lipid membrane, whose activity was inhibited by Bcl-2 (41). The results of DCF-DA should be interpreted with caution. One plausible explanation is as follows: Bax formed an ion channel and enhanced the transport of specific cations (not proton) or anions, which diminished the membrane potential as a result. To compensate the membrane potential, the respiratory chain may be activated to enhance the proton pumping activity, leading the inside of the cell to become alkaline. The activated respiration may lead to oxygen radical formation.

Bcl-2 inhibits the release of cytochrome c from mitochondria (42, 43) and the loss of mitochondrial membrane potential (44-46). It can be explained as that Bax associates with Bcl-2 and Bcl-xL to abolish their activities, resulting in cell death. It has been proposed that Bcl-2 functions as an inhibitor of the anti-oxidant pathway. This is also explained as that Bax generates superoxide and that Bcl-2 antagonizes Bax. In fact, Xiang et al. (20) reported that inducible expression of Bax causes apoptosis without the need for stimulus and increases ROS. Recently, we have isolated an E. coli mutant that suppresses cell death even on expression of Bax, in which the RNase E gene is split into 5'- and 3'-regions. The truncated RNase E also made cells resistant to paraquat, a generator of superoxide.2 Therefore, it is likely that Bax induces the oxygen radical in E. coli. We show the region lethal to bacteria is common to a region inducing apoptosis in mammalian cells (22). The findings described in this study offer a useful approach using E. coli for investigating the molecular mechanism of apoptosis.

    ACKNOWLEDGEMENTS

We thank Dr. Naomitsu Eguchi (Meiji College of Pharmacy, Tokyo) for his technical help with gas-mass spectrometry and Seiko Egawa (Institute of Gerontology, Nippon Medical School) for her technical assistance with scanning electron microscopy. We express thanks to Dr. S. Yonei (Kyoto University, Faculty of Science) for giving a SOD mutant QC774sodA-lacZ sodB-kan strain.

    FOOTNOTES

* The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Dagger Present address: Helix Research Institute Inc., Yana, Kisarazu-city, Chiba-ken 292-0812, Japan.

§ To whom correspondence should be addressed. Tel.: 81-44-733-9267; Fax: 81-44-733-1877; E-mail: ohta{at}nms.ac.jp.

1 The abbreviations used here are: ROS, reactive oxygen species; Ap, ampicillin; PCR, polymerase chain reaction; IPTG, isopropyl-beta -D-thiogalactopyranoside; Rif, rifampicin; DCF-DA, 2',7'-dichlorofluorescein diacetate; DCF, 2',7'-dichlorofluorescein; SOD, superoxide dismutase.

2 R. Nanbu-Wakao, S. Asoh, K. Nishimaki, Y. Ishibashi, R. Tanaka, and S. Ohta, submitted for publication.

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