The Novel Fibronectin-binding Motif and Key Residues of Mycobacteria*

Mariko NaitoDagger , Naoya Ohara, Sohkichi Matsumoto, and Takeshi Yamada

From the Department of Oral Bacteriology, Nagasaki University School of Dentistry, 1-7-1 Sakamoto, Nagasaki 852, Japan

    ABSTRACT
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Abstract
Introduction
Procedures
Results
Discussion
References

The binding motifs of the immunodominant antigen (Ag) alpha -Ag (Ag 85 complex B) of Mycobacterium kansasii for human fibronectin were examined using digested fragments. We defined two fibronectin-binding epitopes on 27 amino acids from 84 to 110 and on 20 amino acids from 211 to 230. The epitopes were almost conserved in the closely related Ag 85 complex of other mycobacteria species. Inhibition of fibronectin binding to intact alpha -Ag molecules was observed with peptide-(84-110), but not with peptide-(211-230). Peptide-(84-110) could also inhibit fibronectin binding to all components of the Ag 85 complex of Bacillus Calmette-Guérin (Ag 85A, Ag 85B, and Ag 85C). Further study with synthetic peptides defined 11 residues from 98 to 108 as the minimum motif. Six residues (98FEWYYQ103) were critical for interacting with fibronectin. The motif revealed no homology to other known prokaryotic and eukaryotic fibronectin-binding proteins. The defined motif of alpha -Ag is novel and unique for mycobacteria.

    INTRODUCTION
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Abstract
Introduction
Procedures
Results
Discussion
References

In recent years, there has been a dramatic increase in mycobacterial disease even in some developed countries (1). The incidence has been associated with an increase in the number of individuals infected with human immunodeficiency virus-1 or patients whose immune systems have been compromised by immunosuppressive agents used to treat other diseases (2). Mycobacterium tuberculosis, Mycobacterium avium-intracellulare complex and Mycobacterium kansasii are the most frequently isolated mycobacteria from AIDS patients (3), and disseminated infection due to M. kansasii is a well established feature of immunocompromised patients (4, 5). Furthermore, M. kansasii has been implicated in pulmonary disease and has been reported as a cause of cutaneous infections and osteomyelitis (6, 7).

The elucidation of the mechanism of these infections and interactions with host immune systems is needed. We have been particularly interested in proteins secreted by mycobacteria. These proteins may play important roles not only in the establishment, progress, and continuation of the infection, but also in the host defense system since live mycobacteria can provoke protective immunity against tuberculosis, but killed organisms cannot (8). alpha -Antigen (Ag),1 also known as Ag 85B (9), Ag 6 (10), and MPT59 (11), is one of the most dominant secretary proteins (12) and is a major stimulant of cellular and humoral immunity (11, 13-15). It is widely distributed among M. tuberculosis, Bacillus Calmette-Guérin (BCG) isolated from Mycobacterium bovis, and atypical mycobacteria (16). This Ag belongs to the Ag 85 complex, which consists of three structurally related components, Ag 85A, Ag 85B (alpha -Ag), and Ag 85C. The complex is characterized by the ability to bind to human fibronectin (FN) (9) and has recently been defined as a mycolyltransferase, which is an important enzyme for unique mycobacterial cell wall synthesis (17). alpha -Ag induces interferon-gamma synthesis (18, 19) and protective immunity against M. tuberculosis infection (20-22) and mediates attachment of whole bacteria to FN-coated surfaces (23-26). It has been suggested that binding to FN may represent the first step in the attachment and entry of mycobacteria into host cells. alpha -Ag has been regarded as an important molecule for BCG-mediated antitumor activity in the treatment of superficial bladder carcinoma (23). Interestingly, this Ag is a stimulus for human monocytes to induce tumor necrosis factor-alpha and this stimulatory effect may be mediated through plasma FN (27). We have cloned and sequenced the genes encoding alpha -Ag of BCG (28), M. kansasii (29), M. avium (30), M. intracellulare (31), and Mycobacterium scrofulaceum (32). As a continuation of this work, we attempted to delineate the specificity of the interaction of alpha -Ag and FN molecules. The novel motif required for FN binding and the contribution of the individual residues were investigated.

    EXPERIMENTAL PROCEDURES
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Abstract
Introduction
Procedures
Results
Discussion
References

Bacterial Strain-- BCG substrain Tokyo was used in this study. It was grown at 37 °C in Sauton medium (33). Transformed BCG was maintained with kanamycin (20 µg/ml).

Media and Reagents-- Peroxidase-conjugated swine anti-rabbit immunoglobulins was purchased from Dako A/S Co. (Glostrup, Denmark). FN was purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan). Trypsin, which was modified by reductive alkylation and treated with tosylphenylalanyl chloromethyl ketone, was purchased from Promega (Madison, WI). Reagents used for synthesis and analysis were reagent-grade. Amino acid derivatives were purchased from Watanabe Chemical (Hiroshima, Japan).

Antigens-- M. kansasii alpha -Ag was purified from culture filtrate (CF) of transformed BCG harboring plasmid pIJK-1, which contains the gene encoding M. kansasii alpha -Ag (34). BCG alpha -Ag (Ag 85B), Ag 85A, Ag 85C, and MPB51 (35) were purified from CF derived from BCG. The procedure to purify antigens was developed on the basis of the purification technique for MPT59 as described previously (36).

Antibodies-- Rabbit antibodies raised against FN were prepared as described previously (24).

Digestion of M. kansasii alpha -Ag-- Purified M. kansasii alpha -Ag (1 mg/ml) was digested by overnight incubation at room temperature with CNBr (10 mg/ml) in 70% formic acid. The reaction mixture was dried under a stream of N2. M. kansasii alpha -Ag (125 µg/ml) was also digested with trypsin (5 µg/ml) at 37 °C for 36 h. The digested mixture was precipitated with 10% (w/v) trichloroacetic acid. These digests were stored at -20 °C.

Binding of FN to CF Proteins and Digested Fragments of M. kansasii alpha -Ag-- The CF proteins (40 µg) were separated by two-dimensional gel electrophoresis as described previously (37). The digested fragments were separated by Tricine (N-tris(hydroxymethyl)methyl glycine/SDS-polyacrylamide gel electrophoresis (38) and two-dimensional gel electrophoresis. Gels were stained with Coomassie Brilliant Blue or transblotted onto Immobilon membranes (Millipore Corp., Bedford, MA). The membranes were blocked with 3% bovine serum albumin in phosphate-buffered saline (BSA/PBS) for 1 h at 37 °C and probed with FN at 10 µg/ml in BSA/PBS for 1 h at 37 °C. Membranes were washed with 0.05% Tween 20 in PBS at 37 °C, and bound FN was detected with anti-FN antibodies followed by peroxidase-conjugated swine anti-rabbit immunoglobulins. Enzyme activity was visualized with 3,3'-diaminobenzidine and hydrogen peroxide in 0.05 M Tris-HCl, pH 7.5.

Protein Sequencing-- The blotted membranes were stained with Coomassie Brilliant Blue. The stained bands and spots were cut out and applied to an Applied Biosystems 477A gas-phase protein sequencer (Applied Biosystems, Foster, CA). Then, the sequence of the five N-terminal amino acid residues of each sample was determined.

Synthesis of Peptides-- The peptides were synthesized using standard Fmoc (N-(9-fluorenyl)methoxycarbonyl) chemistry (39). The synthesized peptides were purified by high pressure liquid chromatography with a RESOURCE RPC reversed-phase column (6.4 × 30 mm, 1 ml; Pharmacia Biotech, Inc., Uppsala, Sweden). Elution was carried out with a linear gradient of 16-32% acetonitrile in 0.1% NH4HCO3, pH 8.3, for 20 min and was monitored at 220 nm. For purification of only peptide-(211-230), 0.1% trifluoroacetic acid was used as buffer. The final products were identified by amino acid analysis. The peptides were lyophilized, and the concentrations were defined by weight.

Enzyme-linked Immunosorbent Assay (ELISA) for FN Binding-- The FN binding to proteins was examined by solid-phase ELISA. SUMILON 96-well ELISA plates (Sumitomo Bakelite Co., Ltd. Tokyo, Japan) were coated for 2 h at 37 °C with 0.5 µg of proteins/well in carbonate buffer, pH 9.6. Nonspecific sites were blocked by incubation with BSA/PBS. After washing, the plates were incubated with 2 µg of FN/well in BSA/PBS for 1 h at 37 °C. Bound FN was determined by rabbit anti-FN antibodies and peroxidase-conjugated swine anti-rabbit immunoglobulins and was subsequently developed with o-phenylendiamine dihydrochloride. The abilities of synthetic peptides to bind to FN were determined as follows. SUMILON 96-well ELISA plates were coated with 100 µl of 6.28 µM peptides in carbonate buffer, pH 9.6, for 24 h at 37 °C. After blocking nonspecific sites with BSA/PBS, the quantity of FN (2 µg/well in BSA/PBS) bound after 1 h of incubation at 37 °C was assayed as described above.

Peptide Inhibition Assay: FN and alpha -Ag-- The capacity of synthetic peptides to interfere with protein binding to FN was examined. SUMILON 96-well ELISA plates were coated for 2 h at 37 °C with 0.5 µg of proteins/well in PBS, pH 7.2. Then, nonspecific sites were blocked by incubation with BSA/PBS as described above. FN in BSA/PBS (20 µg/ml) was preincubated with the peptide at 15 µM for 1 h at 37 °C. Then, 100 µl of FN/peptide mixture was added to the wells. FN bound to solid-phase proteins was then assayed as described above.

Sequence Data Analysis-- The programs FASTA, TFASTA, and BLAST in DDBJ (Shizuoka, Japan) were used to search amino acid sequence homologies in the DDBJ, EMBL, GenBankTM, PIR, and SWISS-PROT data bases. The deduced amino acid sequence alignment was performed using the program ODEN in DDBJ.

    RESULTS
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Abstract
Introduction
Procedures
Results
Discussion
References

FN Binding to CF Proteins-- Fig. 1A shows the two-dimensional gel electrophoresis of CF proteins derived from BCG. The labeled spots were identified as described previously (35). FN bound not only to the Ag 85 complex, but also to MPB51. There were some additional spots around the Ag 85 complex. These spots might be due to streaking of the Ag 85 complex occurring in the first dimension.


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Fig. 1.   Binding of FN to CF proteins and digested M. kansasii alpha -Ag fragments. The CF proteins (40 µg) were separated by two-dimensional gel electrophoresis (A and B). The digested M. kansasii alpha -Ag fragments were separated by Tricine/SDS-polyacrylamide gel electrophoresis (C) or two-dimensional gel electrophoresis (D and E). The gels were stained with Coomassie Brilliant Blue (A, C (lanes 1 and 2), and D) and blotted onto Immobilon membranes. The membranes were probed with FN (B, C (lanes 3 and 4), and E). C: lanes 1 and 3, CNBr-digested M. kansasii alpha -Ag; lanes 2 and 4, trypsin-digested M. kansasii alpha -Ag. The arrows indicate trypsin-1 spots A and B. The relative molecular masses (in kilodaltons) are shown to the left of each panel. B-alpha , BCG alpha -Ag.

Mapping of the FN-binding Epitope on M. kansasii alpha -Ag-- Purified M. kansasii alpha -Ag was digested by CNBr or trypsin to investigate the FN-binding sites. The digested fragments were analyzed by Tricine/SDS-polyacrylamide gel electrophoresis. CNBr digestion generated three bands from M. kansasii alpha -Ag that had molecular masses of 10.5, 6.2, and 5.8 kDa (Table I, CNBr-1, CNBr-2, and CNBr-3). Trypsin digestion generated three bands that had molecular masses of 8.0, 6.1, and 5.7 kDa (Table I, trypsin-1, trypsin-2, and trypsin-3). The other fragments were too small to see on Tricine/SDS-polyacrylamide gel electrophoresis. FN bound to the CNBr-3 and trypsin-1 bands (Fig. 1C). In control experiments, M. kansasii alpha -Ag and the digested bands did not react with anti-FN antibodies. The sequence of the first five N-terminal residues of each digested band was determined. From the sequence data of the trypsin-1 band, it became clear that it contained two fragments. The band was separated into two spots by two-dimensional gel electrophoresis (Fig. 1D, spots A and B). FN bound to both spots (Fig. 1E). The amino acid sequence of M. kansasii alpha -Ag had already been determined, so N-terminal sequence analysis allowed the identification of the bands and spots based on their predicted size and cleavage sites with CNBr and trypsin (Table I). Thus, the suggested key residues for FN binding were 27 residues (amino acids 84-110) and 4 residues (amino acids 216-219) (Fig. 2).

                              
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Table I
The FN binding ability of the digested fragments that were generated from M. kansasii alpha -Ag
The amino acids identified by N-terminal sequencing of M. kansasii alpha -Ag fragments are given, as well as the apparent sizes of the fragments on Tricine/SDS-polyacrylamide gel electrophoresis and the predicted fragment sizes based on cleavage sites of CNBr and trypsin.


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Fig. 2.   Schematic drawing of the positions of digested fragments and synthesized peptides. The numbers indicate the amino acid (AA) residues in the M. kansasii alpha -Ag (K-alpha ) protein sequence. The thick lines indicate FN-bound fragments. The thin lines indicate fragments that FN failed to bind. Hatched boxes and shaded boxes indicate the signal peptide and mature protein of M. kansasii alpha -Ag, respectively.

To confirm the suggestion, two peptides, peptide-(84-110) and peptide-(211-230), were synthesized and tested for their ability to bind to FN. Peptide-(211-230), containing amino acids 216-219, was prepared to improve its binding efficiency against the ELISA plates. Both peptides bound FN significantly above background levels when coated on the ELISA plates (Fig. 3). In M. kansasii alpha -Ag, at least two distinct and discontinuous FN-binding epitopes were identified at amino acids 84-110 and 211-230.


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Fig. 3.   Binding of FN to M. kansasii alpha -Ag, gelatin, and synthesized peptides (peptide-(84-110) peptide-(211-230)) and PBS. Each point is the mean ± S.D. of quadruplicate wells. K-alpha , M. kansasii alpha -Ag.

Inhibition of FN Binding by Peptides-- We tested whether the peptides could inhibit the binding of FN to the M. kansasii alpha -Ag molecule. Peptide-(84-110) inhibited the binding of FN to M. kansasii alpha -Ag (Fig. 4). On the other hand, peptide-(211-230) had no effect on the interaction of FN and M. kansasii alpha -Ag even with the peptide concentration raised to 150 µM (data not shown). Peptide-(84-110) could also inhibit the binding of FN to BCG alpha -Ag, Ag 85A, Ag 85C, and MPB51 (Fig. 4).


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Fig. 4.   Inhibition of FN binding to wells coated with proteins and PBS by peptide-(84-110). Black bars and hatched bars indicate binding of FN to proteins without and with peptide-(84-110), respectively. Each datum is the mean ± S.D. of quadruplicate wells. The sequence similarities of the proteins are shown in Fig. 7. K-alpha , M. kansasii alpha -Ag; B-alpha , BCG alpha -Ag.

Limiting FN-binding Motif-- Using a series of systematically shortened lengths, a fine FN-binding motif was identified (Fig. 5). A significantly decreased inhibition of FN binding to M. kansasii alpha -Ag was associated with the removal of Phe98. Deletion of Val108 from the C terminus resulted in complete loss of inhibition. The critical residues required for FN binding were 11 residues (FEWYYQSGLSV) that corresponded to peptide-(98-108).


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Fig. 5.   Inhibition of FN binding to wells coated with M. kansasii alpha -Ag by synthetic peptides sequentially truncated at the N and C termini. The inhibition percentage was calculated from absorbance at 492 nm. Each datum is the mean ± S.D. of quadruplicate wells.

Analysis of the Motif by Single Residue-substituted Analogues of Peptide-(98-108)-- A series of peptides containing a single substitution with alanine was prepared to identify the residues within amino acids 98-108 that were critical for binding to FN. Fig. 6 shows the inhibition of FN binding to M. kansasii alpha -Ag by these peptides. Substitutions at positions 98-103 dramatically reduced inhibition. The Glu99 right-arrow Ala and Tyr102 right-arrow Ala peptides reduced the inhibitory activity by 15-17%. The Phe98 right-arrow Ala, Trp100 right-arrow Ala, Tyr101 right-arrow Ala, and Gln103 right-arrow Ala peptides gave no inhibition. The Ser104 right-arrow Ala, Leu106 right-arrow Ala, Ser107 right-arrow Ala, and Val108 right-arrow Ala peptides reduced inhibition slightly. No marked difference was observed in the Gly105 right-arrow Ala peptide.


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Fig. 6.   Inhibition activity of single residue-substituted analogues of peptide-(98-108) in FN binding to M. kansasii alpha -Ag. The substituted single residue is indicated below each bar. The inhibition percentage was determined as indicated in the legend of Fig. 5. Each datum is the mean ± S.D. of quadruplicate wells.

    DISCUSSION
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Abstract
Introduction
Procedures
Results
Discussion
References

Pathogenic bacteria attach to their preferred host target by molecules on the bacterial surface, termed adhesins, that recognize cognate host-cell receptors (40). alpha -Ag and its families have been suggested to be one of the bacterial ligands that can achieve attachment to a bridging ligand of host origin extracellular matrix FN. This Ag is specific for mycobacteria, and its interaction with FN might also enable the pathogen to reach a natural pathway determined by the bridging ligand FN-host receptor interaction. We examined the interaction of alpha -Ag with FN to elucidate its role in mycobacterial infection.

At least two different FN-binding epitopes were defined in M. kansasii alpha -Ag, amino acids 84-110 and 211-230. There is no sequence similarity between defined epitopes. These epitopes have no homology to other known prokaryotic and eukaryotic FN-binding proteins except the Ag 85 complex. Therefore, the Ag 85 complex might have unique abilities to bind to FN.

In the peptide inhibition assay, only peptide-(84-110) could inhibit the binding of FN to intact M. kansasii alpha -Ag. Each peptide had no effect on the binding of FN to the other (data not shown). The relative positions of these two epitopes within the three-dimensional structure of M. kansasii alpha -Ag are still unknown, but the results indicate that the multiple epitopes of M. kansasii alpha -Ag may work separately for binding to FN. Amino acids 211-230 might be hidden in the intact natural molecule and not hidden in the denatured state. In contrast, amino acids 84-110 might be exposed on the surface of the molecule and work as a major domain to bind to FN.

The multiple FN-binding regions had been previously reported in alpha -Ag of Mycobacterium leprae (25) and M. bovis (41), but their role in the natural alpha -Ag molecule in FN binding had not yet been examined. In this study, we defined a new region (amino acids 84-110) that might play a very important role in FN binding to the alpha -Ag molecule. This region and its surrounding sequence are almost identical among mycobacterial species including the other structurally related components, Ag 85A and Ag 85C. Peptide-(84-110) could inhibit the binding of FN to all components of the Ag 85 complex of BCG. The defined region may contain the common motif of the Ag 85 complex for binding to FN.

We attempted successively to determine the common motif of alpha -Ag using a series of peptides that truncated at the N and C termini. The peptide inhibition assay was performed to exclude the artifacts that might result from a different efficiency in peptide fixation to the ELISA plates. Concerning deletion at Ala97, ELISA could not detect the binding of FN to the wells that were coated with the peptide (data not shown), but the same peptide showed the full binding inhibition of FN as an original peptide. Ala97 might work to interact with the ELISA plates, but not with FN. The results indicated that the binding motif contained 11 residues, 98FEWYYQSGLSV108.

Further study defined critical amino acid residues in this motif using analogous peptides that were substituted with alanines. Substitution with alanine allowed essential residues of the motif for binding to FN to be determined. The negatively charged residue Glu99, the polar residue Gln103, and the aromatic residues Phe98, Trp100, Tyr101, and Tyr102 seem to be essential for binding to FN. Peptide-(98-108) also could inhibit FN binding to the Ag 85 complex of BCG (data not shown). Comparing the amino acid sequences among these antigens revealed that the defined FN-binding motif allowed some amino acid substitutions. The aromatic residues Trp100 and Tyr102 can change place with the negatively charged residues Glu and Asp, respectively (Fig. 7). These positions might be substituted with other negatively charged residues.


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Fig. 7.   Comparison of the amino acid sequences of components of the Ag 85 complex in the FN-binding region (amino acids 84-110). Residues identical to the residues in M. kansasii alpha -Ag (K-alpha ) are represented by dots. The FN-binding motif is boxed. M.t., M. tuberculosis; M.l., M. leprae; M.a., M. avium; M.i., M. intracellulare; M.s., M. scrofulaceum; B-alpha , BCG alpha -Ag.

The substitution Val108 right-arrow Ala did not affect the inhibition ability. However, the deletion of this residue removed the binding ability completely. Therefore, the residue at this position is absolutely required, although it can be replaced with other hydrophobic residues.

This is the first report on the ability of MPB51 to bind to FN. The secreted protein MPB51 is one of the major proteins in the CF derived from BCG and immunologically cross-reacts with the Ag 85 complex. We have defined the complete sequence of this Ag. MPB51 showed 37-43% homology to the components of the Ag 85 complex (35). MPB51 could bind to FN. Peptide-(84-110) could inhibit the binding of FN to MPB51. Interestingly, there is no sequence similarity between the peptide and MPB51. The Ag 85 complex and MPB51 might share the same binding position on FN. It is very meaningful to analyze their roles in pathogenesis and host immunity.

The motif does not overlap with the region that corresponds to the monoclonal antibody HYT27 binding determinant, amino acids 111-119 (42). There is good agreement with previous studies that HYT27 failed to block alpha -Ag binding to FN (23). Immunoglobulins that recognize the FN-binding motif may enhance mycobacterial binding to FN. The knowledge presented in this study might be useful in the control of mycobacterial infection. We propose the motif, particularly the key residues 98FEWYYQ103, as a possible candidate component of a subunit synthetic vaccine against mycobacterial infection.

Studies to examine the binding sites on FN molecules that interact with alpha -Ag are currently underway in our laboratory. Our findings may contribute to clarification of the roles of alpha -Ag in the mycobacteria-host cell relationship.

    ACKNOWLEDGEMENTS

We thank Dr. T. Niidome for helpful technical support, suggestions, and discussions. We also thank Dr. H. Kitaura, Dr. M. Takano-Shirai, and H. Yukitake for suggestions and encouragement.

    FOOTNOTES

* This work was supported in part by grants from the Human Science Foundation and the Sasakawa Memorial Health Foundation.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Dagger To whom correspondence and reprint requests should be addressed. Tel.: 81-95-849-7649; Fax: 81-95-849-7650; E-mail: mnaito{at}net.nagasaki-u.ac.jp.

1 The abbreviations used are: Ag, antigen; BCG, Bacillus Calmette-Guérin; FN, fibronectin; CF, culture filtrate; Tricine, N-tris(hydroxymethyl)methylglycine; BSA, bovine serum albumin; PBS, phosphate-buffered saline; ELISA, enzyme-linked immunosorbent assay.

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Abstract
Introduction
Procedures
Results
Discussion
References

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