From the Department of Cell Biology, The Scripps Research Institute, La Jolla, California 92037
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ABSTRACT |
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LAP2 is an integral protein of the inner nuclear membrane which binds lamins and chromosomes and is suggested to have an important role in nuclear envelope organization. In a previous study we identified an internal 76-amino acid region of LAP2 which is required for stable targeting of the protein to the nuclear envelope. Here, we have mapped the lamin binding region of LAP2 and demonstrate that it coincides with this nuclear envelope targeting domain. In contrast, we found that the portion of LAP2 involved in binding to chromosomes resides in a separate region of the protein near its NH2 terminus. The minimal lamin binding region of LAP2 is capable of conferring stable nuclear envelope localization when attached to the transmembrane and partial lumenal domains of a protein that shows no nuclear envelope targeting activity. This directly supports the notion that a major mechanism for localization of integral membrane proteins at the inner nuclear membrane involves binding to lamins, which would constrain diffusion through the continuous nuclear envelope/endoplasmic reticulum membrane system.
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INTRODUCTION |
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The nuclear envelope (NE)1 is a specialized region of the ER that forms the nuclear boundary in eukaryotes (for review, see Refs. 1-4). It consists of a double membrane that is perforated by pore complexes and which is lined by the nuclear lamina in higher eukaryotic cells. The outer nuclear membrane is continuous with the more peripheral ER and is linked to the inner nuclear membrane via a "pore membrane" adjacent to the pore complexes. Whereas the outer membrane is biochemically and functionally similar to peripheral ER, the inner membrane differs markedly from the latter because of its association with the nuclear lamina and its content of specific integral membrane proteins that are mostly absent from the peripheral ER (5, 6).
The nuclear lamina is thought to provide a structural framework for the NE and a chromatin anchoring site at the nuclear periphery (for review, see Refs. 1, 3). The lamina contains a polymer of intermediate-type filament proteins termed lamins as well as a number of more minor lamina-associated polypeptides. Four major lamin subtypes have been identified in mammalian somatic cells, lamins A, B1, B2, and C (for review, see Ref. 3). In higher eukaryotes, four lamina-associated proteins of the inner nuclear membrane have been identified: lamina-associated polypeptide (LAP)1 (7, 8), LAP2 (9, 10), p58/lamin B receptor (LBR) (11, 12), and otefin (13). LAP1 (8), LAP2 (10) and LBR (11) are type II integral membrane proteins (14). LAP1 and LAP2 each contains a single predicted transmembrane domain and a large nucleoplasmic region (8, 10). In contrast, LBR, which is homologous to yeast sterol C14 reductase (discussed in Ref. 1), contains eight predicted membrane-spanning regions. Otefin appears to be more peripherally associated with the inner nuclear membrane based on chemical extraction and contains a short hydrophobic segment at its COOH terminus that is not predicted to span the inner nuclear membrane (15). A fifth NE-specific protein with a putative transmembrane domain, emerin, has been identified in mammals (16-18). Emerin has two short regions of homology to LAP2 (16), but whether it is localized to the inner nuclear membrane has not yet been determined definitively.
All three well characterized integral proteins of the inner nuclear membrane, LAP1 and LAP2 (9) and LBR (11), have been shown to bind to lamins. Through this binding interaction, they could contribute to the attachment of the nuclear lamina to the inner nuclear membrane. Lamins (19-23) as well as LAP2 (9) and LBR (24) bind to chromatin. At least some of these interactions are likely to promote the attachment of chromatin to the NE and higher order chromosome organization in the interphase nucleus. The ability of LAP2 to bind to lamins and chromosomes is regulated by mitotic phosphorylation (9), raising the possibility that the dynamics of this protein during mitosis are closely linked to the processes of NE disassembly and reformation. LBR also is phosphorylated during mitosis (25, 26), but whether this affects its ability to bind to chromatin and lamin is not known.
The question of how integral proteins become targeted to the inner nuclear membrane has been raised by a number of recent studies. During mitosis when the NE is disassembled, LAP1 and LAP2 (27) as well as LBR (28) become dispersed throughout bulk ER membranes, and the NE appears to lose its identity as a distinct membrane system. Conversely these proteins become highly concentrated at the chromosome surfaces during late anaphase, when nuclear membrane reassembly around chromosomes takes place. It has been proposed that segregation of integral membrane proteins to the reforming NE at the end of mitosis is driven by binding interactions at the chromosome surfaces in combination with lateral diffusion through a continuous ER reticulum (6, 28). A similar mechanism may operate during interphase to target newly synthesized integral membrane proteins to the inner nuclear membrane (6, 29, 30). Alternatively, it is conceivable that integral proteins are delivered to the inner nuclear membrane by some other process that does not involve simple diffusion in the membrane bilayer.
We recently identified a 76-amino acid region in the nucleoplasmic domain of LAP2 which is required for Triton-stable targeting to the NE (10). In this study we have investigated directly whether the NE targeting of LAP2 could be caused by binding interactions at the inner nuclear membrane. For this we mapped the lamin and chromatin binding regions of LAP2. We found that the region of LAP2 which is necessary and sufficient for stable NE targeting coincides with the lamin binding region but is distinct from the region involved in chromosome binding. We discuss the possibility that binding to lamins could be a major mechanism for targeting integral proteins to the inner nuclear membrane.
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EXPERIMENTAL PROCEDURES |
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Plasmids--
For yeast two-hybrid studies (31), members of a
set of LAP2 fragments described in (10) were inserted into the
BamHI site of the GAL4-DNA binding domain vector pAS2.
Full-length cDNAs for lamin B1 (NcoI-AccI
fragment), lamin B2 (NcoI fragment), and vimentin
(BstBI-EcoRI fragment) were subcloned into the
BamHI site of the GAL4 activation domain vector pACT2 using
Klenow fill-in and BglII linkers. To construct the NC1-TM
LAP2-lectin fusion, polymerase chain reaction primers (GCG CGA TCC TCA
GCG CCC TTC AAA GTA and TGC AGA TCT GTG AGG CTC TAT AAA GGA GGC) were
used to amplify the transmembrane and partial lumenal domains from a
chicken hepatic lectin cDNA (32, 33). After gel purification, this
fragment was cleaved with BamHI and BglII and
subcloned into the BglII site of the HA-LAP2
NC1 plasmid
(10). GST-LAP2 fusion constructs were generated in the pGEX-2T vector
(Pharmacia Biotech Inc.). GST-LAP2
C1 was constructed by subcloning
the BamHI
C1 fragment as described in Ref. 10 into the
BamHI site of pGEX-2T; it encodes amino acids 1-398 of LAP2
fused to the COOH-terminal end of GST. All remaining deletion
constructs in this series derive from this parental plasmid. Deletions
G8,
G6,
G5,
G4, and
G3 were constructed by digestion of
GST-LAP2
C1 with StyI, HindIII, PpuMI-NotI,
NotIHindIII, and NotI,
respectively, followed by fill-in with Klenow and re-ligation. Deletion
G1 results from digestion of GST-LAP2
C1 with XhoI
followed by re-ligation, whereas
G9 comes from FseI
digestion, end-polishing with mung bean nuclease, and re-ligation.
Two-hybrid Assays--
A description of the two-hybrid system
that was used for this work has been published elsewhere (31). Briefly,
Saccharomyces cerevisiae strain Y187 was transformed by the
procedure of Ref. 34 and grown on complete minimal plates lacking Trp
and Leu (Trp
Leu medium). Induction of the lacZ reporter
gene was monitored by plating on media containing
5-bromo-4-chloro-3-indolyl
-D-galactopyranoside or
direct assay of
-galactosidase activity with
O-nitrophenyl-
-D-galactoside (35). For
platings, freshly grown transformants were streaked to
Trp
Leu
plates containing 0.04 µg/ml 5-bromo-4-chloro-3-indolyl
-D-galactopyranoside and 70 mM sodium
phosphate, pH 7.0, and grown for 3-5 days at 30 °C. For the liquid
method, overnight cultures grown in
Trp
Leu liquid were diluted,
grown to A600 = 1.0, and subsequently
permeabilized by SDS/chloroform and assayed for
-galactosidase
activity.
NE Targeting Assay-- 5-µg epitope-tagged expression vectors were transfected into HeLa cells by SupraFect transfection (Qiagen, Chatsworth, CA). The localization of chimeric LAP2 proteins was detected by immunofluorescence with anti-HA peptide-specific monoclonal antibody (Babco, Berkeley, CA) as described previously (36). Coverslips were mounted with Slow-Fade antifade component (Molecular Probes, Eugene, OR). Slides were visualized on a Zeiss Axiophot microscope configured for epifluorescence illumination, photographed with Kodak TMAX ASA400 film, digitized with a UMAX scanner and prepared for printing on a Kodak Pictrography printer using Adobe Photoshop 3.05 software.
Preparation of GST-LAP2 Proteins--
GST-LAP2 fusion proteins
were expressed in Escherichia coli BL21(pLysS). Overnight
cultures were diluted 1:50 into LB medium containing 10 mM
magnesium sulfate, 1% glucose, and 100 µg/ml ampicillin at 30 °C.
When the culture density reached A600 = 0.5, isopropyl-1-thio--D-galactopyranoside was added to 1 mM isopropyl-1-thio-
-D-galactopyranoside, and incubation was continued for 45 min. Cells were harvested by
centrifugation at 4 °C, resuspended in 1/20 volume of 50 mM Tris-HCl, pH 8.0, 2 mM EDTA, 100 mM NaCl and frozen in liquid nitrogen. To prepare extracts,
samples were thawed on ice, sonicated twice for 30 s, and cleared
by centrifugation at 20,000 × g for 20 min. Extracts
were either used directly or purified by binding to
glutathione-Sepharose beads (Pharmacia) for 1 h at 4 °C,
followed by washing in alternating cycles of phosphate-buffered saline and phosphate-buffered saline containing 500 mM NaCl,
followed by elution in phosphate-buffered saline and 15 mM
reduced glutathione (Sigma). Protein samples were displayed on 12.5%
acrylamide-SDS gels and stained with Coomassie Blue to assess the
relative GST-LAP2 fusion content.
Chromosome Binding Assay-- NRK cells were grown at 37 °C in a humidified incubator containing 5% CO2 atmosphere on coverslips in high glucose Dulbecco's modified Eagle's medium (Life Technologies, Inc.), 10% fetal bovine serum (Hyclone Laboratories, Logan UT), and 100 units/ml penicillin and streptomycin (Life Technologies, Inc.). To obtain populations enriched in mitotic cells, cultures were grown for 11 h in media containing 2 mM thymidine (Sigma), after which the cells were washed and incubated a further 7 h in the presence of medium lacking thymidine. Samples were removed from the incubator, washed once in a physiologic buffer (TB, Ref. 37), and then incubated for 5 min on ice in TB containing 10 µg/ml digitonin (Calbiochem). After two washes with TB and 10% bovine serum albumin to remove the digitonin, 100 µl of a glutathione affinity-purified GST-LAP2 fusion protein in TB and 10% bovine serum albumin was applied to each coverslip. After 15-20 min incubation at room temperature, samples were fixed immediately by the addition of 2 ml of 4% formaldehyde in TB for 5 min. Samples were subsequently prepared for immunofluorescence microscopy as described (27), using goat anti-GST polyclonal serum (1:500, Pharmacia) as primary antibody, and fluorescein isothiocyanate-coupled mouse anti-goat antibody (1:50, Pierce) as secondary antibody. Slides were analyzed as described above for the NE targeting assay.
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RESULTS |
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LAP2 Sequences Required for Lamin Binding-- We recently found that a region in the nucleoplasmic domain of LAP2, extending from amino acid 298 to 373, is required for targeting of LAP2 to the NE in a form that is stable to extraction with Triton X-100 (10). Because LAP2 could in principle reach the inner nuclear membrane by diffusion in the membrane bilayer from the peripheral ER (see "Discussion") and because the nucleoplasmic domain of LAP2 is able to bind to lamins and chromosomes, this suggested that the targeting of LAP2 to the inner nuclear membrane could result from binding to one of these components. To explore this possibility further, we have mapped the regions of LAP2 involved in lamin and chromosome binding to determine whether either of these comaps with the region of LAP2 involved in NE targeting.
We employed the yeast two-hybrid system (31) to identify the lamin binding region of LAP2. The full-length LAP2 open reading frame and a number of deletion variants were cloned into the GAL4-DNA binding domain fusion vector (Fig. 1) and were assayed in yeast in pairwise combinations with GAL4-transcription activation domain fusions containing human lamin B1 or lamin B2. In addition, certain LAP2 constructs were tested for interaction with control fusions containing the cytoplasmic intermediate filament vimentin or the yeast SNF4 protein. In this assay system, the binding of LAP2 fragments to lamin B activated a lacZ reporter gene. The activity of this gene was monitored qualitatively by direct plating on 5-bromo-4-chloro-3-indolyl
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The Lamin Binding Region of LAP2 Stably Targets a Transmembrane
Protein to the NE--
Whereas the region of LAP2 between residues 298 and 373 is necessary for stable targeting of transfected deletion
mutants of LAP2 to the NE in cultured cells, this segment by itself
(which lacks a membrane-spanning sequence) is not sufficient for NE
targeting (10). To examine the NE targeting activity of this segment of LAP2 in a more physiological structural context, we fused the LAP2
lamin binding region to a polypeptide containing the transmembrane and
partial lumenal domains of chicken hepatic lectin, a type II integral
membrane protein like LAP2. Chicken hepatic lectin is localized to the
ER and plasma membrane and is not targeted to the NE (32, 38). The
lectin fragment used contains amino acids 10-91 of the lectin protein,
comprising 15 amino acids of the NH2-terminal sequence, a
30-amino acid hydrophobic segment containing the transmembrane domain,
and a 36-amino acid fragment of the lumenal domain. This fusion
construct (NC1-TM) and control full-length LAP2 (FL) were expressed
as HA-tagged proteins via transfection into cultured HeLa cells, and
their localization was determined by immunofluorescent staining with an
anti-HA antibody (Fig. 2). The
full-length LAP2 was localized in a nuclear rim staining pattern
characteristic of NE proteins together with some diffuse cytoplasmic
staining (
Triton panel), in agreement with our previous
observations (10). Furthermore, the NE association was stable, as
indicated by its resistance to extraction in a buffer containing 1%
Triton X-100 and 100 mM NaCl (+Triton panel). Localization of
NC1-TM, the LAP2 lamin binding segment/chicken hepatic lectin chimera, revealed nuclear rim staining along with a
lower level of cytoplasmic staining. The nuclear rim staining was
stable to Triton extraction, indicating that the chimera was stably
targeted to the NE, whereas the cytoplasmic staining was almost
entirely removed by this treatment. Thus, the lamin binding region of
LAP2 is sufficient to target a heterologous polypeptide containing a
transmembrane and partial lumenal domain to the NE in a Triton-stable
fashion.
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NH2-terminal LAP2 Sequences Specify Chromosome
Binding--
To determine whether the chromosome binding region of
LAP2 can be distinguished from its major NE targeting/lamin binding domain, we mapped the region of LAP2 which interacts with chromosomes using an in situ binding assay with mitotic cells. For this,
cultures of coverslip-attached normal rat kidney cells that were
enriched in mitotic populations (see "Experimental Procedures")
were permeabilized by treatment with digitonin and were incubated with
recombinant GST fusion proteins containing various regions of LAP2
(Fig. 3). The cells were then fixed and
labeled with an anti-GST antibody, and the association of the GST-LAP2
fusions with the chromosomes of mitotic cells was determined by
immunofluorescence microscopy. A SDS gel displaying the recombinant
GST-LAP2 fusion proteins purified on glutathione-Sepharose beads is
shown in Fig. 3B. Despite extensive efforts (see
"Experimental Procedures"), we were unable to eliminate partial
proteolysis of the GST-LAP2 constructs in bacteria. The amount of
proteolysis ranged from <5% of total protein (G1,
G3 in Fig.
3B) to approximately 70% (
G5 in Fig. 3B).
Protein amounts in each experiment were normalized such that an equal amount of each intact GST-LAP2 fusion protein was introduced into the
binding assay.
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DISCUSSION |
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Separate Lamin and Chromatin Binding Regions in LAP2-- Here we have identified the regions of LAP2 involved in lamin and chromosome binding. Using immunofluorescence microscopy to measure the interaction of recombinant LAP2 fragments with mitotic chromosomes, we found that the chromosome binding site of LAP2 resides within residues 1-85. The chromosome binding region of LAP2 determined with our assay is different from a region of LAP2 (amino acids 244-296) which was found to bind single-stranded and double-stranded DNA-cellulose columns (39). Furthermore, we found that the major lamin binding region of LAP2 as determined by a yeast two-hybrid assay occurs between residues 298 and 373. Thus, the region of LAP2 which we found previously to be required for Triton-stable targeting to the NE from in vivo transfection studies (10) coincides with the lamin binding site and is distinct from the chromosome binding region. Not only are residues 298-373 required for stable targeting to the NE as demonstrated previously, our present work shows that this segment is sufficient for this targeting when it is attached to the transmembrane region and partial lumenal domain of a type II integral protein that normally resides in the ER and has no stable NE association.
We attempted to extend our two-hybrid analysis of the lamin-LAP2 interaction by carrying out binding studies with LAP2 fragments obtained by expression in bacteria and with lamins obtained by in vitro translation or expression in bacteria. We were unable to detect significant lamin-LAP2 binding in any of these experiments.2 Because specific LAP2-lamin binding was observed previously with LAP2 and lamins purified from rat liver NEs (9), this suggests that the recombinant proteins either were folded improperly or were not postsynthetically modified in a form that allows stable binding. Because our results show that the chromosome and lamin binding regions of LAP2 are separable, this clearly establishes that the binding of LAP2 to mitotic chromosomes (Ref. 9 and this study) does not occur via lamins that may be bound at low levels to the chromosome surfaces. Furthermore, the presence of separable chromosome and lamin binding domains suggests that LAP2 can potentially bind both substrates simultaneously, such as during nuclear membrane reassembly around chromosomes during late anaphase (discussed in Ref. 27). The gene encoding LAP2 appears to gives rise to at least three different polypeptides in mammalian cells that result from alternative mRNA splicing: LAP2 (thymopoietin
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Functions of Lamin and Chromatin Binding by LAP2-- The interaction of LAP2 with nuclear lamins could play a role in the organization of the lamina (e.g. attachment to the NE) and its dynamics during interphase. In support of this possibility, we found recently that microinjection of the 76-amino acid lamin binding segment of LAP2 into mitotic or interphase mammalian cells strongly inhibits nuclear growth, but not NE assembly, probably by interfering with lamina dynamics (42). This raises the possibility that the interaction of LAP2 with the lamins could, among other things, serve to regulate lamina growth negatively. In a related function, the association of LAP2 with both lamins and chromatin could contribute to the reassembly of nuclear membranes and lamins around the chromosome surfaces at the end of mitosis. Nevertheless, it is plausible that NE reassembly is a highly cooperative process involving lamins and several integral proteins in addition to LAP2 (discussed in Refs. 27 and 43). Finally, we suggest that the binding interactions of LAP2 could have a role in biogenesis of the NE during interphase, by serving to target LAP2 to the inner nuclear membrane.
Because the region of LAP2 which is necessary and sufficient for stable targeting to the NE coincides with the lamin binding region but not the chromatin binding segment, this suggests that the targeting of LAP2 to the inner nuclear membrane is based primarily on lamin binding. Nevertheless, it remains possible that the association of LAP2 with chromatin contributes some (albeit weaker) NE targeting activity. Our previous transfection studies showed that an LAP2 mutant containing an internal 104-amino acid deletion that included the 76-residue lamin binding region we have identified accumulated at the NE, although the NE-associated protein was not stable to Triton extraction (10). In this case the NE targeting could have been caused by either the NH2-terminal chromosome binding domain of LAP2 or a hypothetical secondary lamin binding region of LAP2 which flanks the core lamin binding segment. In the case of the LBR protein, the NE targeting region has been shown to reside in the first 200 amino acids of the nucleoplasmic domain and first transmembrane segment, a region that also contains binding activities for lamins and chromosomes (38, 44, 45). However, the role of these individual binding activities in NE targeting has not yet been examined. How could LAP2 be targeted to the inner nuclear membrane by binding interactions at the lamina, considering the structural properties of the NE? Although the inner and outer nuclear membranes are in direct continuity via the pore membrane, the pore complex could potentially present a topological barrier to the movement of LAP2 and other integral proteins from their site of synthesis in the peripheral ER to the inner nuclear membrane. However, structural studies have indicated that ~10-nm-diameter channels occur at the periphery of the pore complex immediately adjacent to the pore membrane (46). In principle these channels could allow the free diffusion of integral proteins with sufficiently small nucleoplasmic domains around the pore membrane between the outer and inner nuclear membranes. With such a bidirectional diffusional exchange, proteins could become trapped at the inner nuclear membrane by virtue of binding interactions with the nuclear lamina (6). Consistent with this model, another integral protein of the inner nuclear membrane, LAP1C, has been shown to be capable of rapid exchange between the two nuclei of heterokaryons, presumably by diffusing through a common ER network (47). This suggests that LAP1C continuously undergoes bidirectional movement between the peripheral ER and the inner nuclear membrane, even though it is highly concentrated in the latter membrane at steady state. No evidence exists at present to support an alternative targeting mechanism involving active, unidirectional movement of proteins from the peripheral ER to the inner nuclear membrane. We believe that a general mechanism for the targeting of integral proteins to the inner nuclear membrane is likely to involve binding interactions at the NE. Both LAP1 and LAP2 are stably anchored to the nuclear lamina, as indicated by their resistance to extraction from the lamina by detergent treatments (7). Moreover, recent measurements of the diffusion dynamics of a fusion protein containing LBR in living cells indicated that the motion of this protein at the inner nuclear membrane was strongly restricted (28), also indicative of strong binding interactions at the inner nuclear membrane. The fact that all three well characterized integral membrane proteins of the inner nuclear membrane interact with lamins suggests that lamin binding in particular may function to target proteins to the inner nuclear membrane. This model is made particularly appealing by the fact that lamins constitute extremely abundant inner membrane proteins and appear to be associated with the inner nuclear membrane in virtually all higher eukaryotic cells. A prediction of this model is that dissociation of lamins from the NE by microinjection of a dominant negative lamin mutant (48) or by other means would result in the rapid redistribution of inner membrane proteins to the peripheral ER during interphase. ![]() |
ACKNOWLEDGEMENTS |
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We thank Dr. Thomas Hoger for providing cDNAs of mouse lamins B1 and B2, Dr. Yassemi Capetanaki for providing vimentin cDNA, Dr. Stephen J. Elledge for providing a kit of the yeast two-hybrid system, Dr. Kurt Drickamer for providing chicken hepatic lectin cDNA, and Dr. Charlie Glass for consultations about the lamin binding experiments.
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FOOTNOTES |
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* The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
The first two authors contributed equally to this study.
§ Present address: Division of Biological Sciences, Graduate School of Science, Nagoya University, Nagoya Japan 464-01.
¶ To whom correspondence should be addressed: Dept. of Cell Biology, The Scripps Research Institute, Mail Drop IMM-10, 10550 North Torrey Pines Rd., La Jolla, CA 92037. Tel.: 619-784-8514; Fax: 619-784-9132; E-mail: lgerace{at}scripps.edu.
1 The abbreviations used are: NE, nuclear envelope; ER, endoplasmic reticulum; LAP, lamina-associated protein; LBR, p58/lamin B receptor; HA, hemagglutinin; GST, glutathione S-transferase.
2 C. Fritze and L. Gerace, unpublished observations.
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REFERENCES |
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