From the Institut für Molekularbiologie und Tumorforschung, Philipps-Universität, Emil-Mannkopff-Straße 2, D-35037 Marburg, Germany
![]() |
ABSTRACT |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Steroid hormones activate gene expression by interaction of their receptors with hormone-responsive DNA elements and tissue-specific or ubiquitous factors. To monitor the molecular changes on the promoter of the rabbit uteroglobin gene during early pseudopregnancy in vivo, we have applied the genomic footprinting methodology to endometrial tissue. Estrogen induction results in the simultaneous occupancy of an estrogen-responsive element and an adjacent GC/GT box in the promoter. DNA binding assays demonstrate that the corresponding regulatory factors are the ligand-induced estrogen receptor and the ubiquitous transcription factor Sp1. Both factors functionally synergize in primary endometrial cells, showing that the GC/GT box is an essential part of a composite estrogen-responsive unit. However, the estrogen receptor and Sp1 do not bind cooperatively to their sites in vitro, suggesting that other mechanisms might be responsible for the hormone-dependent binding of Sp1 in vivo. Since hormone treatment leads to the appearance of a distinct DNase I-hypersensitive site over the promoter chromatin, an estrogen-induced change in the local chromatin structure could facilitate binding of Sp1 in vivo.
![]() |
INTRODUCTION |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Gene expression is controlled by combinatorial arrangement of sequence-specific transcription factors that interact with each other and with components of the transcription initiation complex. Modulation of gene transcription is achieved by factors whose activity is reversibly influenced by ligands or posttranslational modifications, such as phosphorylation. The transcriptional effects of ligand-inducible steroid hormone receptors represent a typical example. To attain efficiency and specificity in gene regulation, steroid hormone receptors interact with ubiquitous or tissue-specific factors as well as with co-activators, which bridge to the general transcriptional apparatus (1).
The particular combination of factors and the nature of the interactions required for regulated expression of a gene is specified in the form of complex arrays of cis-acting elements in its enhancer and promoter regions. These elements are usually identified through gene transfer experiments and in vitro DNA binding studies. However, the binding of factors to cognate DNA elements, as well as interactions with other factors, is conditioned by the native organization of DNA in chromatin, which imposes defined topological constraints (2). Therefore, demonstration of the functional relevance of DNA elements requires a genomic analysis of the chromosomally organized gene in intact cells.
To approach these issues, we have studied the steroid hormone-dependent regulation of the rabbit uteroglobin gene. In female animals, the gene is transcriptionally active in epithelial cells of the endometrium during the preimplantation phase of pregnancy (3, 4). Estrogen and progesterone exert a stimulatory effect on transcription (5). Whereas the action of progesterone is probably mediated by an upstream enhancer region containing two clusters of progesterone receptor binding sites (6), estrogen might function via a noncanonical estrogen-responsive element (ERE),1 as suggested by gene transfer and in vitro binding assays (7).
We have analyzed the promoter of the endogenous uteroglobin gene by genomic footprinting in endometrial epithelium from uterus in situ. Upon hormone treatment, we detect endometrium-specific occupancy of the noncanonical ERE in the promoter. Concomitantly, we observe estrogen-dependent recruitment of Sp1 to an adjacent site, which proved to be functionally essential for estrogen induction of the promoter. We provide evidence that Sp1 but not the related transcription factor Sp3 (8) mediates estrogen induction. Within this composite unit, the estrogen receptor (ER) and Sp1 bind noncooperatively in vitro. Synergistic binding in vivo could involve the chromatin configuration of DNA, since estrogen treatment induces a change in the chromatin structure of the promoter documented by the appearance of a prominent DNase I-hypersensitive site.
![]() |
EXPERIMENTAL PROCEDURES |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Plasmids--
For the construction of the uteroglobin
promoter-driven luciferase reporter plasmid, a HindIII
(395) to XhoI (+14) uteroglobin promoter fragment (9) was
inserted into the pXP2 plasmid (10). Promoter linker-scanner mutants
were generated from similar constructs (9). Further mutations were
introduced by oligonucleotide-directed mutagenesis (11). The following
expression plasmids for insect cells were used: for the expression of
OctI, pPacOct (kindly supplied by C. Möws (12)); for human ER
(13), pPacER (constructed and provided by G. Suske); for Sp1, pPacSp1
(14); and for Sp3, pPacUbxSp3 (15).
Genomic Dimethyl Sulfate (DMS) Footprinting in Vivo and Ligation-mediated Polymerase Chain Reaction-- DMS footprinting was performed according to Ref. 16. In brief, endometrial epithelium or liver cells were exposed to 0.2% DMS in Dulbecco's modified Eagle's medium for 5 min. The reaction was stopped by washing several times with phosphate-buffered saline. Epithelial cells were separated, and genomic DNA was prepared, cleaved with piperidine, and submitted to a ligation-mediated polymerase chain reaction as described (17). The following gene-specific oligonucleotides were used: for the upper strand, ERA1 (GATCCTGGGTGCTCCT), ERA2 (TCACAGCCACTTGGGCCTCAGC), and ERA3 (GGCCTCAGCTTCTCCTGTGACAGG); for the lower strand, ER1 (ACTGCATTATTTACTTGGG), ER2 (CATTGACTTGGTGGGATAAGTAAATATTCCC), and ER3 (TTCCCTTTTCTCAATCCAGTTTCCATCCC).
Electrophoretic Mobility Shift Analysis (EMSA) and Methylation
Protection Analysis in Vitro--
Nuclear extracts for EMSA were
prepared according to Ref. 18. The following double-stranded DNA
oligonucleotides were used: GTI, named Sp, containing a uteroglobin
Sp-binding site (232 to
223) (8); a uteroglobin promoter
(Fnu4HI-HpaII) fragment comprising an ERE and
Sp-binding site (
304 to
207) or the respective linker-scanner
mutants (9); and a consensus ERE (19). The gel-purified
oligonucleotides were 32P-labeled by the Klenow filling-in
reaction, and unincorporated nucleotides were removed through gel
filtration. Recombinant human ER was expressed in COS-7 cells by
transient transfection with the expression plasmid HEGO (13).
Antibodies against Sp1 (20) and ER (21) were preincubated with nuclear
extracts for 15 min at room temperature. Poly(dI-dC) and calf thymus
DNA were added as nonspecific competitor, and binding buffers were as
described in Ref. 22 but containing 3 mM ZnCl2.
The binding reaction was incubated at room temperature for 15 min
before loading on a 5% nondenaturing polyacrylamide gel.
10
7 M diethylstilbestrol was included in
experiments with ER. Gels were run in 0.5-fold Tris borate/EDTA buffer
at 7 V/cm and room temperature for 120 min, dried, and
autoradiographed.
Cell Transfection and Reporter Assay--
SL2 Schneider cells
were maintained in Schneider's modified Drosophila medium
supplemented with 10% fetal calf serum (insect cell-qualified, Life
Technologies, Inc.) at 25 °C. Transient transfections were performed
by the calcium phosphate method (23). A 60-mm dish received 5 µg of
reporter plasmid, different amounts of co-expression plasmids, and calf
thymus DNA to a total of 10 µg of DNA. Hormones were added directly
to the culture medium after 2.5 h of chloroquine treatment (0.1 mM). Anti-estrogen, ICI 164.384 (107
M), was eventually applied to noninduced cells to further
reduce basal reporter expression (24). Cells were harvested 48 h
after transfection, and extracts were prepared. Luciferase and
-galactosidase activity were determined as described (25) and
normalized to protein concentration, since co-expressed Sp
transcription factors might have affected standardization with an
internal reporter plasmid (26).
Animals and Treatments-- Adult 1/2- to 1-year-old female New Zealand White or chinchilla bastard rabbits (3-4 kg) were housed in individual cages under controlled conditions of temperature and light (12 h light-dark) and were kept separated from male rabbits to prevent pheromone-triggered ovulation. Pseudopregnancy was induced by hCG (Ekluton, Vemie Veterinär Chemie, Kempen) injection (200 IU/kg of body weight) intramuscularly at day 0. Animals were killed at day 4 by lethal injection of T61 (Hoechst, Germany) in the ear vein. The uterus and liver were rapidly excised and rinsed in phosphate-buffered saline.
Gene Transfer in Primary Cells-- Details of the method used to isolate, cultivate, and transfect endometrial epithelium cells will be published elsewhere. Briefly, the inner luminal surface of the uterus was incubated with collagenase at 37 °C and flushed, and cells were collected by centrifugation. The suspension of cells was maintained in Dulbecco's modified Eagle's medium on polystyrene culture dishes. The medium was supplemented with 5% newborn calf serum (Life Technologies), penicillin (100 IU/ml), and streptomycin (100 µg/ml). Cells were cultivated at 37 °C in 5% CO2. The purity of the primary cell preparation was determined by immunocytochemistry employing an antibody against rabbit uteroglobin.
Transient transfection was performed by the calcium phosphate co-precipitation method (27). Hormones were added to the medium as ethanolic solution immediately after transfection, and incubation was continued for 48 h. Diethylstilbestrol was used as estrogen agonist, and ICI 164,384 (24) was used as as anti-estrogen. An equivalent amount of solvent was used as control.DNase I Hypersensitivity Analysis-- Treatment of cells with DNase I was performed as described (17). 6 µg of genomic DNA were cleaved with PvuII, resolved in 1.2% agarose gel, and blotted on Biodyne A nylon membrane (Pall, Dreieich). Hybridization was carried out with a radioactively labeled (PvuII-BamHI) uteroglobin gene fragment (+193 to +9) according to Ref. 28.
Quantitation of Radiolabeled DNA-- Quantitative evaluation was performed directly from the dried gels applying phosphor screen autoradiography using a PhosphorImager and ImageQuant software (Molecular Dynamics Inc., Sunnyvale, CA) or from autoradiographs using laser scanner and ScanPack software (Biometra, Göttingen).
![]() |
RESULTS |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Hormone-induced Changes in the Occupancy of Putative Regulatory
Elements--
Expression of the rabbit uteroglobin gene in epithelial
cells of the endometrium is induced by estrogen and progesterone (5). Using in vitro DNA binding experiments and transient gene
transfer, we have defined a noncanonical ERE located around 258 (7) and three Sp-binding sites (also referred to as GC/GT boxes) located around
225,
200, and
65, respectively (9, 29) (Fig.
1A). To determine the role of
these putative regulatory elements in hormone induction in
vivo, we have studied their occupancy by the genomic footprinting
technique (16). Since there are no suitable endometrial cell lines
available, we have applied the DMS footprinting technique to the rabbit
endometrial epithelium in situ after hormonal treatment of
the animal. Ligation-mediated polymerase chain reaction analysis of the
modified and piperidine-cleaved DNA revealed two
hormone-dependent footprints in the promoter region between
300 and
200, which appeared in the endometrial epithelium but not
in liver (Fig. 1B). Protection of three guanine residues
over the ERE was found in both strands (open triangles), whereas a hypermethylated guanine residue was found in the lower strand
(filled triangle). When compared with the liver lanes and taking as reference an unchanged band just upstream of the ERE, the
protection in the upper strand was 30% in average for the three
guanines. Over the adjacent GC/GT box, five guanine residues were
protected in the lower strand and a single guanine in the upper strand.
The corresponding residues are indicated in the nucleotide sequence of
Fig. 1A. The footprints were observed in the hormonally
induced endometrial epithelium but not in the uninduced endometrial
epithelium from oestrus female rabbits (Fig. 1C, and see
below). These footprints over the ERE and over the adjacent GC/GT box
never appeared singly but always pairwise after various hormonal
treatment leading to induction of the promoter. Interestingly, no
prominent footprints were observed over the other putative GC/GT boxes
located further proximally (data not shown).
|
The Distal Footprint Is Caused by the Estrogen Receptor, and the
Adjacent Footprint Is Caused by a Member of the Sp Family of
Transcription Factors--
The distal footprint extended from 264 to
252. The pattern of protected guanines resembles an in
vitro footprint formerly described for the ER (7). We verified
that estrogens produced by the ovaries upon hCG stimulation are
responsible for the induced footprint over the ERE by exposing the
explanted uterus from oestrus animals to estrogen treatment. A
footprint was induced when specific ligands of the ER, such as the
synthetic estrogen diethylstilbestrol, were applied. The observed
pattern resembled the footprints from pseudopregnant animals treated
with hCG described above (Fig. 1, compare B and
C). An estrogen-dependent in vivo
footprint over the ERE was detectable as early as 30 min after hormone
treatment (data not shown) and was visible for at least 4 h,
suggesting a direct estrogen response. Similarly to the pairwise
occurrence of footprints in hCG-induced endometrial epithelium,
estrogen treatment of uterus explants elicited the concomitant
occupancy of the ERE and the adjacent GC/GT box (Fig.
1C).
|
Functional Synergism between Sp1 and ER--
According to binding
studies in vitro and gene transfer experiments, two
additional putative Sp-binding sites in the uteroglobin promoter have
been proposed (9, 29) (Fig. 1A). To reveal the functional
significance of the various Sp-binding sites, we performed transient
transfection experiments in primary epithelial cells from the
endometrium. We selected linker-scanning mutations that affect Sp
factor binding to the individual GC/GT boxes (9, 29) (Fig.
1A). The wild type uteroglobin gene promoter fragment spanning from 395 to +14 conferred moderate estrogen inducibility to
the reporter (Fig. 3A,
line 1), in accordance with the estrogen induction of
uteroglobin transcription observed in intact animals (5). Mutation of
the ERE completely abolished induction, confirming its function as a
response element (Fig. 3A, line 2). Unexpectedly, mutation of the GC/GT box adjacent to the ERE drastically reduced estrogen induction (Fig. 3A, line 3), whereas
mutations of the more promoter-proximal GC/GT boxes, at
195 and at
65, did not reduce estrogen induction but consistently resulted in
slightly higher induction (Fig. 3A, lines 4 and
5, respectively). Combination of these individual
mutants completely abolished estrogen induction (Fig. 3A,
lines 6-8). This experiment demonstrates that
estrogen-activated transcription requires not only binding of the
activated receptor to its response element but also a synergistic
interaction with another unrelated transcription factor, namely one of
the Sp factors bound to the adjacent GC/GT box. Interestingly, the
basal transcription rate was differently affected by these mutations.
Mutation in the GC/GT box at
65 led to a strong decrease in basal
activity, whereas the two more distal GC/GT boxes exhibited weaker
effects, suggesting a differential role of these sites for basal and
activated transcription.
|
ER and Sp1 Bind to the Adjacent Binding Sites Simultaneously but Not Cooperatively-- The recruitment of Sp1 to its binding site triggered by the binding of the liganded ER could be due to cooperative DNA binding of the two factors. To test this hypothesis, we performed a titration experiment with the recombinant human ER and Sp1 proteins and a DNA fragment comprising the ERE and the adjacent GC/GT box. In the presence of sufficiently high concentrations of both factors, a ternary complex containing ERE and Sp1 was observed (Fig. 2B, lanes 8 and 11-16), as verified by methylation protection (data not shown). A similar gel retardation experiment was performed with DNA fragments mutated in either the ERE or the GT/GC box. As expected, the retarded band corresponding to the mutated site was not visible, and no ternary complex was detected (Fig. 2B, lanes 17 and 18). A quantitation of the different DNA-bound proteins as resolved by EMSA (Fig. 2B, lanes 13-16), reveals a linear function between the amount of added ER and the appearance of the ternary complex (Fig. 2C). These data exclude a significant cooperativity in binding of ER and Sp1 to the corresponding region in the promoter in vitro.
The Nucleoprotein Organization of the Promoter Changes upon Hormone
Induction--
An alternative explanation for the simultaneous binding
of ER and Sp1 in vivo would be a hormone-induced alteration
in chromatin structure, which could facilitate Sp1 binding. To assess
this possibility, we measured the sensitivity of nuclear chromosomal DNA toward nucleolytic agents like DNase I or methidiumpropyl-EDTA. In
nuclei treated with DNase I, already at the lowest enzyme concentration used, a narrow hypersensitive site was found at position 80
exclusively in the endometrial epithelium of hormonally induced animals
(Fig. 4A). The same region was
also hypersensitive toward methidiumpropyl-EDTA (data not shown). Thus
transcriptional activation of the uteroglobin gene promoter is
accompanied by an alteration of the nucleoprotein organization as
indicated by the preferential accessibility toward nucleolytic agents
at a precise position of the promoter.
|
![]() |
DISCUSSION |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|
Both the ERE and the Adjacent GC/GT Box Are Essential for Estrogen Induction-- DNA regulatory elements can be identified in transfection experiments in cell culture, but the ultimate definition of sequences involved in the regulation of a particular gene can only be accomplished by studies in the intact tissue or even in the animal. One way to approach this goal is to analyze the regulatory regions of DNA using genomic footprinting techniques to identify sites that are occupied in vivo under physiologically relevant conditions (28). This type of experiment has usually been performed with cell lines in culture, with the well known limitations imposed by immortalization and artificial culture conditions. Here, we report the molecular analysis of steroid hormone effects in the native endometrial epithelium performed in an organ explant and applied to the rabbit uteroglobin gene. This methodology also allows us to monitor the pharmacological effects of related therapeutic agents in the complex background of the intact animal. The predictions derived from these studies have been experimentally tested via gene transfer in a homogenous and nearly authentic cellular system, i.e. primary cells from the endometrial epithelium.
Previous gene transfer experiments led to the independent identification of a noncanonical ERE and several GC/GT boxes in the rabbit uteroglobin promoter, but the contribution of these elements to gene regulation was unclear since the experiments were carried out in cells not expressing the endogenous uteroglobin gene (7, 9). In particular, it was not known whether the GC/GT elements participate in hormonal induction of the uteroglobin gene. The results of genomic footprinting experiments in the endometrial epithelium in situ demonstrate a selective behavior of the different GC/GT boxes, namely the simultaneous occupancy of the ERE and only the adjacent GC/GT box following induction of uteroglobin gene expression during early pseudopregnancy. A similar pattern was observed when animals were treated only with estrogens, although the extent of the observed changes was less pronounced, probably reflecting cooperative hormonal effects throughout early pseudopregnancy. Altogether, these findings suggest a permissive role for the liganded ER in the occupancy of the adjacent GC/GT box. Binding experiments with nuclear extracts from induced endometrial cells and with recombinant purified proteins suggest that the factors responsible for the observed in vivo footprints are the ER and members of the Sp family of transcription factors.ER and Sp1 Synergize Functionally but Do Not Bind Cooperatively to the Uteroglobin Promoter DNA-- In addition to the ERE, the integrity of the adjacent GC/GT box was essential for estrogen induction in primary endometrial cells. In transfection experiments in insect cells, which lack Sp factors, ER alone was insufficient for estrogen-dependent induction of the uteroglobin promoter. Since Sp1 was able to transcriptionally synergize with ER, while Sp3 is virtually inactive and represents only a minor fraction of GC/GT box-binding protein in endometrial epithelium extracts, we assume that Sp1 is the protein mediating the synergistic occupancy of ERE and GC/GT box. Sp3 has been shown to contain an inhibitory domain that represses transactivation mediated by Sp1 (15). Therefore, the possibility of modulating the estrogen response by changes in the cellular level of Sp3 relative to Sp1 should be considered (31).
The simultaneous occupancy of the adjacent ERE and GC/GT box could be due to protein-protein interactions, which would imply cooperative binding of the two proteins to their respective sites. However, although ER and Sp1 can bind to a promoter fragment simultaneously, quantitative binding experiments do not reveal a significant binding cooperativity in vitro.Molecular Mechanism of the Synergism between ER and Sp1-- Other factors could be involved in synergistic binding of ER and Sp1. Co-activators, such as CBP/p300, have been suggested to participate in Sp1 and ER transactivation and could therefore mediate, directly or indirectly, their synergism (32). Such multiple interactions between regulatory proteins could be difficult to reproduce in cell-free binding reactions, since the concentration of some partners in crude nuclear extracts might be limiting.
Multiple interactions of ER and Sp1 with components of the basal transcription machinery, such as TATA box binding protein-associated proteins, have been described (33-35), which could mediate the functional synergism (36). Their particular role in synergistic recruitment of the transcriptional preinitiation complex could be investigated in reconstituted in vitro transcribing systems. An alternative explanation could involve the chromatin context of the DNA template. It is conceivable that ER and Sp1 do synergize for DNA binding on chromatin, although they do not synergize on free DNA, a behavior that has been described for other factors (37, 38). Experiments with nucleosomes assembled on uteroglobin promoter DNA would be required to clarify this issue. Finally, hormone-dependent chromatin remodeling could possibly explain the observed synergism. Binding of ligand-activated ER to the uteroglobin ERE in chromatin could induce a change in the chromatin structure required for entry or access of Sp1 to the promoter. This mechanism is supported by the appearance of a hormone-inducible DNase I-hypersensitive site in the active promoter chromatin. A similar mechanism has been proposed for the glucocorticoid- or progestin-induced binding of the ubiquitous transcription factor NF1 to the murine mammary tumor virus promoter (17, 39, 40). To test this hypothesis, further knowledge about the nucleosomal organization of the uteroglobin promoter is required. A similar hormone-dependent binding of sequence-specific transcription factors to the vicinity of a steroid hormone-responsive element has been observed for the estrogen-inducible apo-very low density lipoprotein II promoter (41-43), the glucocorticoid-inducible tyrosine aminotransferase gene (44), and the glucocorticoid- or progesterone-inducible murine mammary tumor virus promoter (39). Thus, hormone-dependent recruitment of ubiquitous transcription factors to nearby and topologically restricted sites may be a crucial mechanism of hormonal gene regulation (45-49). ![]() |
ACKNOWLEDGEMENTS |
---|
We thank L. Klein-Hittpaß (Essen) and G. L. Greene (Chicago) for the H222 antibody; T. Petri and W.-D. Schleuning (Schering AG, Berlin) for Sf9 cells infected with baculovirus expressing the human ER; G. Suske and his team for SL2 cell expression plasmids, antibody to Sp1, and helpful discussions; and A. E. Wakeling (Zeneca) for the generous gift of anti-estrogen ICI 164.384. We further thank J. Neulen (Freiburg) for advice concerning the preparation of epithelial cells from the endometrium, H. M. Beier (Aachen), and C. Hegele-Hartung (Schering AG) for advice on the hormonal treatment of the rabbit. The experimental work was supported by grants from the DFG and the FCI.
![]() |
FOOTNOTES |
---|
* This work was supported by the Deutsche Forschungsgemeinschaft, the European Union, and the Fonds der Chemischen Industrie.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Present address: Dept. of Medicine, University of California San
Diego, 9500 Gilman Dr., CMM Room 345, La Jolla, CA 92093-0648.
§ To whom correspondence should be addressed. Tel.: 49-6421-28-62-86; Fax: 49-6421-28-53-98; E-mail: beato{at}imt.uni-marburg.de.
1 The abbreviations used are: ERE, estrogen-responsive element; ER, estrogen receptor; DMS, dimethyl sulfate; EMSA, electrophoretic mobility shift analysis; hCG, human chorionic gonadotropin.
![]() |
REFERENCES |
---|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
---|