(Received for publication, December 11, 1996, and in revised form, January 22, 1997)
From the § Howard Hughes Medical Institute and
Division of Cellular and Molecular Medicine, Department
of Pharmacology, University of California, San Diego,
La Jolla, California 92093-0683
Kinesin is a mechanoenzyme that couples adenosine
triphosphate hydrolysis to the generation of force and movement along
microtubules. To gain insight into the interactions of kinesin and
microtubules, cross-linking, mapping, and proteolysis experiments were
executed. The motor domain of kinesin was consistently cross-linked to
both - and
-tubulin subunits. Initial mapping of the cross-linked kinesin suggested that amino acids within the N- and C-terminal cyanogen bromide fragments of the motor domain formed cross-links to
both
- and
-tubulin subunits. Mapping of the cross-linked tubulin
suggested that cross-linking to kinesin motors occurred within the
negatively charged, C-terminal cyanogen bromide fragments of
- and
-tubulin subunits. Treatment of microtubules with subtilisin, a
protease that cleaves C-terminal fragments from
- and
-tubulin, reduced their ability to be cross-linked to kinesin motors supporting the idea that C-terminal sequences of
- and
-tubulin may interact with kinesin motors. Finally, of three synthetic peptides, a peptide consisting of the last 12 C-terminal amino acids of
-tubulin competitively interfered with the microtubule-stimulated adenosine triphosphatase activity of the kinesin motor, further suggesting that
C-terminal sequences of
-tubulin may be involved in kinesin binding.
Members of the kinesin superfamily of motor proteins harness the energy liberated from ATP hydrolysis to generate a wide variety of intracellular movements (1, 2). To elucidate how kinesin generates force against the microtubule, it is important to understand how kinesin and the microtubule interact. Initial truncation studies of Drosophila kinesin heavy chain revealed that the N-terminal 340 amino acids can hydrolyze ATP and translocate microtubules (3, 4). Consistent with this observation, sequence homology among members of the kinesin superfamily is restricted to this region (2).
Recent work has focused on the interaction of the motor domain with the
microtubule, which is composed of repeating dimeric subunits, each
consisting of an - and
-tubulin monomer. The binding
stoichiometry of the kinesin motor to tubulin was reported to be one
kinesin motor domain/tubulin dimer (5, 6). However, the issue of
whether kinesin can be cross-linked only to
-subunits (6), or to
both
- and
-subunits (7), remains controversial. Analysis of the
atomic structure of the human kinesin motor domain led to the
suggestion that loops 8 and 12 (amino acids 138-173 and 272-280) bind
to microtubules, which is consistent with the observation that the
C-terminal region of the 340-amino acid kinesin motor may be involved
in binding to microtubules (8, 9).
In this paper, the cross-linking reaction between kinesin motors and
microtubules was investigated further. Using low concentrations of
cross-linker, kinesin motors can be cross-linked consistently to both
- and
-tubulin subunits. Further analysis suggests that cross-linking likely occurs within both the most N- and C-terminal CnBr
fragments of the kinesin motor. Finally, to probe the sites in tubulin
that interact with the kinesin motor, the sites of cross-linking on
- and
-tubulin were mapped, the behavior of subtilisin-treated
tubulin was assessed, and competitive peptide inhibitors were assayed.
Together, the data suggest that highly charged C-terminal regions of
- and
-tubulin interact with the kinesin motor.
Unless otherwise noted, kinesin motor refers to a protein expressed from the vector pET(23b+) (Novagen); the resulting construct, pET(23b+)K369I, encodes the first 369 amino acids of Drosophila kinesin heavy chain plus one additional isoleucine at the C terminus and is referred to as K369I (11).
Protein Preparation (K369I)A 20-ml culture of BL21(DE3)
containing pET(23b+)K369I was grown for 14 h on a rotary shaker at
37 °C (12, 13). Following 1:100 dilution into LB+ medium, cells were
grown at 37 °C to an A600 of 2.0. After
induction with 0.5 mM
isopropyl-1-thio--D-galactopyranoside, the culture was
shaken for 3 h at 37 °C. All subsequent steps were performed at
4 °C unless otherwise noted. Cells were collected by centrifugation
at 4000 × g, resuspended in 5 ml of lysis buffer (50 mM imidazole, pH 7.9, 50 mM NaCl, 1 mM DTT,1 0.1 mM
ADP, 0.1 mM EDTA, 0.5 mM MgCl2,
0.01% Nonidet P-40, 2 µg/ml soybean trypsin inhibitor)/g of cell
pellet, and lysed with a French press set at 1000 p.s.i. Following
centrifugation at 100,000 g, the supernatant was incubated
on a rocker with 2 ml of phosphocellulose resin (Whatman P-11)/10 ml of
supernatant. After 30 min, the solution was centrifuged at 3000 × g, and the supernatant carefully removed. This step was
repeated two times. The phosphocellulose resin was added to an
Econo-Pak column (Bio-Rad, 1.5 × 12 cm) and washed with 10 column
bed volumes of lysis buffer. Protein was eluted with lysis buffer
containing 500 mM NaCl, dialyzed into lysis buffer,
concentrated, and exchanged into 80 mM PIPES, pH 6.9, 2 mM EDTA, 1 mM MgCl2, 1 mM DTT, 1.0 mM ADP using a Centricon-30 (Amicon). Purified protein was snap frozen with liquid N2
in 50-µl aliquots and stored at
80 °C. Before use, each aliquot
was thawed on ice and clarified by centrifugation at 100,000 × g. Protein concentration was measured by the Bradford assay
(14).
Bovine brain tubulin was
purified by cycles of assembly/disassembly followed by phosphocellulose
chromatography (15). Purified tubulin was drop frozen into liquid
N2 and stored at 80 °C. Before use, tubulin was thawed
on ice and clarified by centrifugation at 100,000 × g.
Protein concentration was measured by the Bradford assay (14).
Microtubules were polymerized by the addition of 7.5%
Me2SO, 1 mM GTP, 20 µM Taxol
(paclitaxel) and incubation for 15 min at 37 °C (4).
Kinesin motor (K369I) at 10 µM
and microtubules at 10 µM were incubated together in
binding buffer (80 mM PIPES, pH 6.9, 2 mM EDTA,
1 mM MgCl2, 50 mM NaCl, 1 mM DTT, 5 mM AMP-PNP, 20 µM paclitaxel) for 30 min at 25 °C. Microtubules and bound K369I were
isolated by centrifugation at 50,000 × g. Pellets were
resuspended in the original reaction volume with binding buffer. The
cross-linking reagent EDC (Pierce) was added to 0.2 mM
final concentration, reactions were incubated for 2 h at 25 °C,
then terminated by the addition of 5 × sample buffer (25 mM Tris-Cl, pH 6.8, 5% SDS, 5% ME, 25% sucrose,
0.05% bromphenol blue). To study the effects of ionic strength,
kinesin motors were cross-linked to microtubules under standard
conditions with the concentration of NaCl adjusted from 50 to 100, 150, 200, and 250 mM NaCl.
Products were diluted 1:5 with 1 × sample buffer (5 mM Tris-Cl, pH 6.8, 1% SDS, 1% ME,
5% sucrose, 0.01% bromphenol blue), and separated on 7.5% SDS gels,
pH 9.1, or 10% Tris-Tricine gels (16-18). Gels were stained with
0.05% Coomassie Blue R-250 in 40% methanol, 10% acetic acid and
destained with 40% methanol, 10% acetic acid.
Products separated on polyacrylamide
gels were electrophoretically transferred to 0.2-µm polyvinylidine
difluoride membranes and probed with antibodies specific for kinesin
(N18), -tubulin (DM1A), or
-tubulin (DM1B, 18D6) (19, 20). Bound
antibodies were detected using alkaline phosphatase-labeled secondary
antibodies and 5-bromo-4-chloro-3-indolyl phosphate/nitro blue
tetrazolium.
Proteins of interest were cut out
of polyacrylamide gels with a razor blade. Gel slices were dried under
vacuum before the addition of 50 µl/slice of 100 mM CnBr
solution in 70% formic acid. The reaction was incubated at 25 °C
for 1 h in the dark. Slices were washed with 5 mM
Tris-Cl, pH 6.8, 40% methanol, 1% SDS, 1% ME, 5% sucrose, 0.01%
bromphenol until the dye retained a blue color. Gel slices were then
washed with 100% methanol for 15 min and dried under vacuum. Gel
slices were rehydrated with 1 × sample buffer (5 mM
Tris-Cl, pH 6.8, 1% SDS, 1%
ME, 5% sucrose, 0.01% bromphenol
blue) before loading onto a 10% Tris-Tricine gel (18, 21).
Paclitaxel-stabilized microtubules were digested with 1.2% (w/w) subtilisin (Sigma) at 37 °C for 12 h, which has been reported to have no observable effect on microtubule structure as judged by electron microscopy (10, 17, 22). The reaction was terminated by the addition of phenylmethylsulfonyl fluoride to 5 mM. Control, untreated microtubules were incubated in the same manner as microtubules treated with subtilisin. Untreated and subtilisin-treated microtubules were recovered by centrifugation through a 30% sucrose cushion at 50,000 × g and were resuspended in 80 mM PIPES, pH 6.9, 2 mM EDTA, 1 mM DTT, 20 µM paclitaxel.
ATPase AssaysThe rate of ATP hydrolysis by the kinesin motor was measured by a molybdate/malachite green colometric assay for Pi release (23). Typically, 10-µl aliquots of a reaction mixture containing 10 µg/ml of the kinesin motor were quenched with 90 µl of ice-cold 0.3 M HClO4, prior to addition of 100 µl of sodium molybdate/malachite green solution in 0.7 M HCl. After 20-30 min at 25 °C, the A650 of the HClO4/malachite green solution was determined using a microtiter plate reader. Rates for ATP hydrolysis were corrected for ATP hydrolysis in the malachite green/HClO4.
Peptide Synthesis-,
-, and scrambled peptides were
synthesized on a 2-mmol scale using standard solid state methods on a
Milligen 9050 peptide synthesizer. Before use, portions of the crude
eluted peptides (20 mg) were purified by reverse-phase high performance
liquid chromatography using a Waters DeltaPak C18 column
and a gradient of 0.1% trichloroacetic acid to 50% acetonitrile to
elute peptides. Purified peptides were freeze-dried and stored under
vacuum. Before use, peptides were resuspended in 80 mM
PIPES, pH 6.9, 2 mM EDTA, 1 mM DTT, 20 µM paclitaxel.
Polyclonal rabbit antibody NK18 was made against
a synthetic peptide corresponding to the N-terminal 17 amino acids of
Drosophila kinesin heavy chain (MASREREIPAEDSIKVVC) linked
through the C-terminal cysteine to bovine serum albumin (Chiron).
Polyclonal antibody PAN was generously provided by J. Scholey
(University of California, Davis) (24). This antiserum resulted from
pooling three separate antibodies raised against the following peptide
sequences: LVDLAGSE, SSRSHSVF, and HIPYRNSKLT. Monoclonal antibody
His-Tag was purchased from Dianova. Monoclonal antibody 18D6 was
generously provided by D. Cleveland (University of California, San
Diego) (20). Monoclonal antibodies DM1A and DM1B, which are specific
for - and
-tubulin, respectively, were purchased from
Sigma.
To study the
interaction between kinesin motors and microtubules, chemical reagents
were used to trap these proteins in their bound complexes. To generate
these complexes, purified protein consisting of the N-terminal 369 amino acids of Drosophila kinesin heavy chain (K369I) was
bound to microtubules using AMP-PNP, a nonhydrolyzable ATP analog that
"locks" the motor in the microtubule-bound phase of its
mechanochemical cycle (11, 25). After isolating the complexes by
centrifugation, the cross-linking reagent EDC was added. To evaluate
the optimal concentration of cross-linker, the final concentration of
EDC was varied. Increasing the amount of cross-linker from 0.1 to 20 mM increases the prevalence of higher order, oligomeric
complexes (Fig. 1). Based on these data, 0.2 mM final concentration of EDC was used in subsequent
experiments; this concentration produced a reasonable amount of the
97-kDa product with minimal yield of higher order products. In
addition, by using a low concentration of cross-linker, the degree of
nonspecific cross-linking was limited.
The effect of increasing the molar ratio of kinesin motors to
microtubules on the cross-linking reaction was also evaluated. Cross-linking reactions were carried out with 0.2 mM EDC
and 10 µM microtubules, but the concentration of kinesin
was varied between 5 and 25 µM. As the molar ratio of
kinesin motors to microtubules increased, the yield of the 97-kDa
cross-linked product did not obviously change (Fig. 2).
Therefore, a "standard" cross-linking reaction was chosen that
included 10 µM microtubules, 10 µM kinesin motors, and 0.2 mM EDC in binding buffer.
To analyze the composition of the 97-kDa complex, products of a
standard cross-linking reaction were separated on a 7.5%
SDS-polyacrylamide gel adjusted from pH 8.8 to pH 9.1 to obtain optimal
resolution of - and
-tubulin subunits and tubulin complexes (26).
Under these gel conditions,
-tubulin has a relative mobility of
55 kDa,
-tubulin has a relative mobility of
53 kDa and the
97-kDa complex resolves into a doublet (Fig.
3A). Probing Western blots with
subunit-specific antibodies revealed that the upper band of the doublet
contains
-tubulin, and the lower band contains
-tubulin (Fig.
3B); both bands react with kinesin-specific antibodies (Fig.
3C). These results support the hypothesis that kinesin
motors can be cross-linked to
- as well as
-tubulin subunits.
To test whether the cross-linking of K369I to - and
-tubulin
reflects a comparable affinity of interaction, the ionic strength dependence of the reaction was assessed (Fig. 4). The
data indicate that as ionic strength increases, the overall efficiency
of the cross-linking reaction decreases, which suggests, as reported previously, that the binding reaction between kinesin motors and microtubules contains a significant ionic component (27). However, the
relative cross-linking of kinesin motors to
- versus
-tubulin was ionic strength-independent. Comparison of the relative
yields of K +
versus K +
complexes (where K is
kinesin motor) revealed that the ratio of K +
complexes to K +
complexes was consistent within a given set of reactions up to 250 mM NaCl. This result argues against the interpretation that
cross-links to
-tubulin are nonspecific or represent secondary sites
of interaction.
Mapping Regions of the Kinesin Motor That Interact with the Microtubule
To determine which regions of the kinesin motor make
contact with the microtubule, points of cross-linking were localized within the 97-kDa product. Gel slices containing the 97-kDa product (a
mixture of K + and K +
) were partially digested with CnBr, a
chemical that cleaves proteins specifically at methionine residues (21,
28). Under these conditions, a nested set of kinesin and tubulin
fragments resulted. These fragments were run on a second gel, blotted,
and probed with antibodies specific for the N- or C-terminal CnBr
fragments of the kinesin motor. In the hypothetical case of a kinesin
motor cross-linked through its C-terminal fragment to the microtubule,
when fragments are probed with an antibody specific for the N terminus
of the kinesin motor, only full-length protein should shift out of
register as compared with control, uncross-linked kinesin motors (Fig.
5A). If, on the other hand, the motor is
probed with a C-terminal kinesin motor antibody, all products should
shift out of register (Fig. 5B). When these experiments were
carried out, virtually 100% of the full-length protein shifted to a
slower relative mobility as compared with control, uncross-linked motor
fragments when mapped from the N terminus (Fig.
6A). In addition, there are partial shifts of
intermediate-sized fragments as well. Mapping with the C-terminal
specific antibody generated comparable data; full-length product
shifted completely, while lower fragments shifted partially (Fig.
6B). The simplest interpretation of these data is that
cross-links to the microtubule occur within both the N- and
C-terminal CnBr fragments of the kinesin motor. Attempts to map the K +
and K +
species separately were unsuccessful owing to low
yields. Thus, the issue of whether
- and
-tubulin bind to
different regions of the kinesin motor could not be resolved.
Mapping the Sites on the Microtubule That Interact with the Kinesin Motor
To evaluate the regions of - and
-tubulin that
interact with the kinesin motor, partial CnBr digests of the 97-kDa
cross-linked product were run on gels, blotted, and probed with
tubulin-specific antibodies. If
-tubulin were linked through its
C-terminal CnBr fragment to the kinesin motor, then upon probing with
an antibody specific for the N terminus of
-tubulin, one would have
expected that only the largest fragment would shift out of register as compared with control, uncross-linked tubulin. This result was observed, suggesting that contact with the kinesin motor occurs within
the most C-terminal CnBr fragment of the
-subunit (Fig. 7A). To test this result further, maps of the
97-kDa cross-linked product were generated using the antibody specific
for the C terminus of
-tubulin. If cross-linking occurs within the
most C-terminal CnBr fragment of
-tubulin, when fragments are probed
with a
-tubulin-specific antibody whose site of recognition lies
near the C terminus, all fragments should shift to slower relative
mobilities as compared with control, uncross-linked tubulin fragments.
When this experiment was carried out, all fragments appeared to shift,
which is consistent with the hypothesis that at least one region of
contact between microtubules and the kinesin motor resides within the
most C-terminal, CnBr fragment of
-tubulin (Fig. 7B).
Contacts between -tubulin and the kinesin motor were analyzed in a
similar manner except that an N-terminal
-tubulin map was not
generated because an appropriate N-terminal
-tubulin antibody was
not available. If cross-linking to the kinesin motor occurs through the
most C-terminal CnBr fragment of
-tubulin, then when CnBr fragments
from the 97-kDa product are probed with an
-tubulin-specific
antibody whose site of recognition lies near the C terminus, all
fragments should shift to slower relative mobilities as compared with
control, uncross-linked tubulin fragments. When this experiment was
carried out, all fragments appeared to shift suggesting that at least
one region of contact between microtubules and the kinesin motor
resides within the most C-terminal CnBr fragment of
-tubulin (Fig.
7C).
To confirm whether the C termini
of - and
-tubulin interact with the kinesin motor,
paclitaxel-stabilized microtubules were treated with the protease
subtilisin under conditions that are reported to remove C-terminal
fragments of
- and
-tubulin subunits without obviously affecting
microtubule structure (10, 17, 22). These microtubules were then tested
for their ability to be cross-linked to the kinesin motor using EDC in
the presence of AMP-PNP (25). Cleavage of microtubules with subtilisin
changes the relative mobility of microtubules by
4 kDa (Fig.
8A); the reaction appears to be complete as
there is no obvious uncleaved product (U-MT) remaining in the
subtilisin-treated (S-MT) material. In reactions in which S-MT were
cross-linked to kinesin motors, very little cross-linked product was
detected by Coomassie Blue staining, whereas in those reactions in
which U-MT were cross-linked to kinesin motors, cross-linked product is
readily observed. Probing a Western blot of these reactions with an
anti-kinesin antibody reveals that a comparatively small amount of
cross-linked product is present in the reaction with S-MT
versus the reaction with U-MT. The observation of a small
amount of a S-MT + K product (
94 kDa) suggests that treatment of
microtubules with subtilisin may not completely remove the kinesin
binding site (Fig. 8B). Therefore, additional separate sites
of interaction not removed by subtilisin may exist. Nonetheless, these
results suggest that treating microtubules with subtilisin markedly
reduces their ability to be cross-linked to kinesin motors.
The functional significance of diminishing kinesin-MT interaction by
subtilisin treatment was assessed by examining MT-stimulated ATPase
activity. At 50 mM salt, the Km for
microtubule-stimulated ATPase activation of K369I was measured to be
1.92 µM, and the Vmax was measured
to be 4.4 s1, both of which are well within published
values for comparable constructs (3, 27, 29). When subtilisin-treated
microtubules were added to the kinesin motor, the
Vmax remained essentially unchanged; however,
the Km increased from 1.92 µM to 9.03 µM (Fig. 9). These data also suggest that
the interaction of subtilisin-treated microtubules with the kinesin
motor is impaired.
Since treatment of microtubules with subtilisin affects both - and
-tubulin, it was important to know whether the modification of
-,
-, or both tubulin subunits resulted in the observed decrease in
microtubule-stimulated ATPase activity. To address this question, peptides
(SVEGEGEEEGEE) and
(GEFEEEGEEDEA), which correspond to
the portions of tubulin removed by subtilisin (30-32), were synthesized and tested for their ability to inhibit
microtubule-stimulated ATPase activity. Addition of 1 or 5 mM
-peptide had little effect on the
Km for ATPase activation of the kinesin motor (Fig.
10A). In contrast, the addition of 1 or 5 mM
-peptide increased the Km from
1.89 µM to 3.16 µM or 4.15 µM, respectively (Fig. 10B). The addition of a
control scrambled peptide (EGEVEESEGEGE) had little effect on the
Km (Fig. 10C). In all cases, Vmax remained unchanged. The increase in
Km upon the addition of the
-peptide, but not the
- or the scrambled peptide, suggests that the
-peptide
competitively interferes with the binding of microtubules to the
kinesin motor.
The data presented here demonstrate that the kinesin
motor domain can be reproducibly cross-linked to both - and
-tubulin subunits of microtubules. These results are in agreement
with a recently published study (7), but are in conflict with an earlier report (6). Both previous studies carried out cross-linking reactions with a 10-fold higher concentration of EDC (2.0 mM) than the concentration used in these studies (0.2 mM). If 1 or 3 mM EDC is used in the
cross-linking reactions, the resolution between K +
and K +
complexes is lower than if 0.2 mM EDC is used; therefore,
distinguishing between K +
and K +
complexes might be more
difficult as the concentration of EDC increases (Fig. 1). An
alternative explanation for these discrepancies could be that one study
(6) used squid kinesin, while the other study (7), and the present
study, used Drosophila kinesin. It is possible that squid
kinesin may bind
-tubulin, but may not present the EDC-reactive
groups in the necessary orientation or proximity to be cross-linked to
-tubulin (7). Nevertheless, the comparable ionic strength
dependence, and the consistency of cross-linking to
- and
-tubulin observed here, suggests that the cross-links to both
subunits are specific, and therefore that both are likely to reflect
relevant biological interactions.
The view that kinesin motors make multiple contacts with the
microtubule is consistent with other studies of the interactions of
kinesin and microtubules. For example, the motor is highly processive
and releases the microtubule for only a small fraction of its 50-ms
cycle time (25). One way to maintain such a strong hold on the
microtubule might be through the use of multiple contacts with - and
-tubulin monomers as the motor moves over the microtubule lattice.
Data indicating an 8-nm step in combination with the data suggesting
that kinesin could only be cross-linked to
-tubulin led to a model
in which the kinesin motor steps from
-subunit to
-subunit (6,
33). Speculatively, a more complex model may be invoked to explain
contacts with both
- and
-tubulin. One possibility is that
kinesin takes steps smaller than 8 nm. Indeed, recently improved
methodology suggests that the motor might take 5- and 3-nm steps as
well as 8-nm steps (34).
The initial mapping data suggest that both the N- and C-terminal CnBr fragments of K369I interact with the microtubule, which supports models in which the kinesin motor has more than one region capable of interacting with the microtubule, or alternatively, possesses a single, discontinuous microtubule binding site. Analysis of the atomic structure of the kinesin and NCD motors (8, 44) led to the suggestion that two regions, one corresponding to residues 145-180 and a second corresponding to residues 278-287 of K369I, might interact with the microtubule. The latter region is contained within the cross-linked C-terminal CnBr fragment, but the former region is not included within the cross-linked N-terminal CnBr fragment. Although further work will be required to resolve the inconsistencies, both lines of investigation agree that the region defined by the C-terminal CnBr fragment of K369I interacts with the microtubule.
The C Termini ofThe data presented here suggest that the C termini of -
and
-tubulins may both interact with the kinesin motor domain. Some reports indicated that these regions may also interact with
microtubule-associated proteins including kinesin, tau, dynein, and
MAP2 (10, 17, 35-37), although other reports contradicted these
findings (22, 38, 39). The work reported here is the first attempt to
map directly the sites of interaction between microtubules and the kinesin motor; these results point to the C termini of
- and/or
-tubulin as sites where binding may occur. Furthermore, treatment of
paclitaxel-stabilized microtubules with the protease subtilisin, which
is reported to remove C-terminal fragments from the
- and
-tubulin subunits (30), increased the Km for
ATPase activation of the kinesin motor while the
Vmax remained unchanged. One interpretation is
that subtilisin removes one of the kinesin binding sites on
- or
-tubulin, but that additional sites exist. Perhaps the site removed
by subtilisin is a relatively low affinity site whose absence can be
overcome by the addition of a greater concentration of
microtubules.
Consistent with the idea that the C termini of tubulins interact with
K369I is the finding that addition of a C-terminal peptide corresponding to the last 12 amino acids of pig -tubulin can increase the Km for microtubule-stimulated ATPase
activity of kinesin from 1.89 µM up to 4.15 µM. These data suggest that the
-peptide competitively
interferes with the binding of microtubules to the kinesin motor and
may include some portion of a kinesin binding site. The lack of
interference by the
-peptide is not clear given the cross-linking
results, but perhaps the
-peptide does not assume a correct
conformation. Future work should include the analysis of longer
C-terminal tubulin peptides, since it is possible that the peptides
used in the current experiments may be too short to encompass fully a
C-terminal site of interaction with the kinesin motor. In fact, earlier
reports indicate that the sites of subtilisin cleavage are about 20-25
amino acids more N-terminal than the ones chosen for the peptide design
(40, 41).
A functional role for the C termini of tubulins has also been suggested
previously based on sequence alignments of these regions (17). Although
the C termini of tubulins display high phylogenetic variability, the
sequences EGEE and EEGEE are well conserved (42, 43). This conservation
of sequence and negative charge is consistent with the idea that the C
termini of - and
-tubulin bind to the kinesin motor. The finding
that negatively charged amino acids on tubulin make contact with
kinesin motors, suggests that positively charged residues on the motor
will be important for microtubule binding. Indeed, many conserved
positively charged residues are found in the cross-linked N- and
C-terminal CnBr fragments.
Combining
data contained in this report with what is known about tubulin and
kinesin structure, a simple model can be put forth to describe the
kinesin-microtubule interaction. Cross-linking data suggest that the
C-terminal domain of the tubulin -subunit interacts with the
N-terminal domain of the tubulin
-subunit (45). In addition, a 6-Å
resolution structure of tubulin suggests that the monomers are
similarly oriented within the filament (46). Therefore, the distance
between the C termini of
- and
-tubulin could be as much as 4 nm
depending on the flexibility and mobility of the C termini relative to
the bulk of the subunits. Accordingly, the motor domain could make
contact with the C termini of both
- and
-tubulin, especially if
these domains are somewhat flexible.
Given the finding that the highly charged C terminus of -tubulin is
likely to interact with the kinesin motor, it is tempting to speculate
that kinesin binds to its polymeric substrate and generates force using
a similar mechanism as myosin. The first step of the myosin-actin
interaction is thought to be mediated by ionic interactions that
generate weak binding between the two proteins. Subsequent step(s) are
thought to be mostly hydrophobic in nature and are proposed to
strengthen overall binding before the power stroke occurs (47). One
possibility is that the ionic interactions characterized in this report
are the counterpart to the initial ionic interactions reported for the
myosin-actin system. Other sites of interaction may be important for
the final, stereospecific positioning of the motor on the microtubule
before the power stroke occurs. It is likely that future studies of how the kinesin motor binds and releases microtubules will address these
questions and expand the understanding of how these molecular machines
operate.
We are grateful to D. Woerpel for building the pETK369I construct, S. Farlow for the protocol for purification of the kinesin motor domain, Dr. N. Barton for helpful advice and insight, Dr. D. Cleveland for monoclonal antibody 18D6, Dr. E. Komives for reagents and helpful advice about peptide synthesis, and Dr. J. Scholey for the PAN antibody.