(Received for publication, August 6, 1996, and in revised form, October 12, 1996)
From the Department of Biochemistry, Weizmann Institute of Science, Rehovot 76100, Israel
The alga Dunaliella salina is outstanding is its ability to withstand extremely high salinities. To uncover mechanisms underlying salt tolerance, a search was carried out for salt-induced proteins. The level of a plasma membrane 150-kDa protein, p150, was found to increase with rising external salinity (Sadka, A., Himmelhoch, S., and Zamir, A. (1991) Plant Physiol. 95, 822-831). Based on its cDNA-deduced sequence, p150 belongs to the transferrin family of proteins so far identified only in animals. This, to our best knowledge, is the first demonstration of a transferrin-like protein in a photosynthetic organism. Unlike animal transferrins, p150 contains three, rather than two, internal repeats and a COOH-terminal extension including an acidic amino acid cluster. In intact cells p150 is degraded by Pronase, indicating that the protein is extracellularly exposed. The relationship of p150 to iron uptake is supported by the induction of the protein in iron-deficient media and by its radioactive labeling in cells grown with 59Fe. Accumulation of p150 is transcriptionally regulated. It is proposed that p150 acts in iron uptake other than by receptor-mediated endocytosis and that its induction permits the cells to overcome a possible limitation in iron availability under high salinities.
An exceptionally interesting model to uncover mechanisms conferring salt tolerance to photosynthetic organisms is provided by the unicellular green algae Dunaliella. Algae belonging to this genus are remarkable in their ability to proliferate in salinities as high as saturating NaCl concentrations. Within a broad range of external salinities, the algae maintain a relatively low internal salt concentration (1) and balance the external osmotic pressure by accumulating iso-osmotic levels of glycerol (2).
Although glycerol-mediated osmotic adjustment is a necessary element in the salt tolerance of Dunaliella, it is reasonably insufficient to permit growth in high salinities. To unravel additional mechanisms contributing to salt tolerance it was postulated that participating components might be specifically induced under high salt. Accordingly, screens were performed for proteins preferentially accumulating in high salt-grown cells (3, 4). Following this approach, a protein of 150 kDa, p150, was observed to rise markedly with an increase in external salinity. Furthermore, in cells transferred from low to high salt, an increase in p150 roughly coincided with resumption of cell division following the hyperosmotic shock (3). The protein was characterized biochemically and by immunoelectron microscopy as a major plasma membrane component and was accordingly postulated to be involved in the control of salt or nutrient fluxes across the cell membrane (3).
Evidently, structural and functional characterization of p150 could provide important new insights concerning the nature of factors limiting growth in high salinities as well as the mechanisms that evolved to counteract these limitations.
We now show that p150 is a unique new member of the transferrin family of proteins which, to the best of our knowledge, has been identified so far only in animals (5-7). The transferrin family includes mainly iron-binding proteins found in serum and other body fluids that perform essential roles in iron binding and transport. All members of the transferrin family characterized to date are typically composed of two homologous halves, and most are not membrane-associated. The membrane-associated p150 is distinctly different in encompassing three, rather than two, internal repeats. The involvement of p150 in iron uptake is suggested by its induction under iron limitation and supported by 59Fe labeling of the protein. Thus, transferrin-homologous proteins have probably evolved far earlier than thought so far to function in the uptake of iron, or other nutrients, by unicellular eukaryotes.
The source of Dunaliella salina, the method used to obtain axenic cultures, the medium composition, and growth conditions were essentially as described (4, 8). The standard growth medium contained 0.5 M NaCl. Deviations from the standard medium are indicated.
Preparation and Screening of a D. salina cDNA LibraryD. salina cells grown in 0.5 M
NaCl were transferred in two steps to 3.5 M NaCl
(hyperosmotic shock), essentially as described (4). Total RNA was
prepared from cells harvested 9 h after the shock by extraction
with 1 ml of Tri Reagent/107 cells (9) (Molecular Research
Center, Inc.). Poly(A)+ mRNA was isolated using the
Poly(A)+ tract mRNA Isolation System (Promega).
Synthesis of cDNA, using 3 µg of poly(A)+ mRNA,
was by the ZAP-cDNA Synthesis Kit (Stratagene). Cloning in the Uni-ZAP XR vector used the Stratagene cloning kit. The original library
contained 7 × 105 plaque-forming units. An amplified
library was screened with anti-p150 antibodies (3) using the Stratagene
picoBlue Immunoscreening Kit. Positive clones were processed further to
rescue the corresponding recombinant plasmids.
Phage-rescued plasmids were subjected to DNA sequencing analysis by the dideoxy sequencing method in the Applied Biosystems 373A DNA sequencer.
Northern Blot AnalysisFifteen µg of total RNA extracted as described above was analyzed on each lane of a formaldehyde agarose gel (10). The probe used contained the full-length cDNA for p150.
Partial Protein SequencingPurification of p150 was as described (3). The band containing p150 was excised from the preparative gel and transferred to an SDS-containing 10-20% polyacrylamide gradient gel in the presence of 2 µg of Staphylococcus aureus V8 protease/lane (11). The digestion was continued for 30 min, and the oligopeptide products were separated by electrophoresis and blotted on a polyvinylidene difluoride membrane (12). The NH2-terminal amino acid sequence of the two major proteolytic fragments was determined using the Applied Biosystems model 475A protein microsequencer, equipped with a model 120A on-line high performance liquid chromatography phenylthiohydantoin derivative analyzer and a model 900A data acquisition and processing unit.
Pronase DigestionAlgae grown in 0.5 M NaCl to a density of 106 cells/ml were harvested and resuspended in fresh medium to a density of 107 cells/ml. Pronase, at the indicated final concentrations, was added to 1-ml cell suspensions that were incubated for 1 h at 30 °C. The cells were collected by centrifugation, washed twice with 0.5 M NaCl, resuspended in SDS-sample buffer, and incubated at 100 °C for 3 min. Aliquots corresponding to 5 × 105 cells were analyzed on SDS-PAGE1 followed by immunoblot analysis with anti-p150 antibodies.
59Fe LabelingTo 200 ml of a 1 × 106 cells/ml culture in a medium containing 3.5 M NaCl, 0.1 µM FeCl3, and 4 µM EDTA, 100 µCi of 59Fe (as FeCl3, carrier-free, DuPont NEN) was added. After 2 days growth under standard conditions, the cells were harvested, plasma membranes were isolated as described (4) and solubilized with 0.1% Triton X-100. Aliquots containing 25 µg of protein were resolved by nondenaturing electrophoresis on a 4-10% polyacrylamide gradient gel with a 3% polyacrylamide stacking gel. After blotting onto nitrocellulose, radioactivity was monitored by a PhosphorImager. A parallel lane was cut out from the nondenaturing gel and subjected to a second dimension electrophoresis under denaturing conditions (13). Proteins were localized by staining with Coomassie Brilliant Blue.
A
cDNA expression library was constructed in the Zap vector using
D. salina poly(A)+ mRNA isolated 9 h
after the cells had been subjected to a hyperosmotic shock. The
cDNA library was screened with anti-p150 polyclonal antibodies.
Several cross-reacting phages were found to contain cDNA inserts of
~4.4 kilobases.
Sequence determination of the cloned cDNA indicated that it
included a 3.822-kilobase open reading frame encoding a 1,274-amino acid polypeptide, flanked on its 5 end by 36 base pairs and on its 3
end by 485 base pairs attached to a poly(A) tail (Fig. 1).
To confirm that the cloned cDNA encoded for p150, the predicted amino acid sequence was compared with several sequences determined for undigested p150 and two protease V8 digestion products. All of the directly determined amino acid sequences were identified in the sequence predicted from the isolated cDNA. However, the sequence reported previously as corresponding to the NH2 terminus of the intact p150 (3) was not found at the expected site, but rather close to the carboxyl terminus of the protein. The most plausible explanation for this discrepancy is that the NH2 terminus of the intact protein is blocked and that the sequence determined previously is of a small COOH-terminal peptide. This peptide is generated by proteolytic cleavage occurring after the intact protein had been isolated by SDS-PAGE. The likelihood of such a cleavage is supported by the occasional appearance of a polypeptide somewhat shorter than p150 in purified p150 preparations after storage (3). The small COOH-terminal peptide remains undetected in this analysis.
The ATG assigned as the initiation codon is the most upstream in the cDNA, is in frame with the following open reading frame, and together with flanking nucleotides conforms to the core consensus sequence for translation initiation in plants (14, 15). For reasons explained below, the Gly numbered +1 (Fig. 1) was designated as the NH2-terminal residue of the mature protein. According to this assignment, the 17 mainly hydrophobic amino acid residues at the NH2 terminus probably constitute the leader peptide responsible for the ultimate direction of the protein to the plasma membrane.
Internal Repeats in p150 and Relationship to the Transferrin FamilyThe predicted amino acid sequence of p150 (Fig.
2) includes three internally homologous segments ranging
in length from approximately 350 to 400 amino acid residues. The
NH2-terminal (1) and central (
2) repeats are ~64% identical, whereas the
COOH-terminal repeat (
) shows ~28% identity to either the
1 or
2 repeats. Although it is not
possible to establish definitively the boundaries of the three repeats,
it is clear that they are separated by relatively short connecting
sequences. Particularly striking is the peptide connecting
2 with
which includes four consecutive Asn residues. The unique ~100-amino acid COOH-terminal sequence is outstanding in
containing a dense cluster of acidic residues which is followed by a
relatively hydrophobic sequence.
Data base searches revealed a clear homology between the repeated units
in p150 and transferrins, a family of proteins so far identified only
in animals (Fig. 3). The functionally best characterized
members of this family are the serum transferrins, major iron-binding
proteins of ~80 kDa, which are essential for iron delivery to
different types of cells (16). The serum ferritransferrin is
internalized by target cells via receptor-mediated endocytosis and
releases its bound iron after the internal pH of the vesicles turns
acidic (7). Other transferrins include lactoferrin, ovotransferrin, and
melanotransferrin, p97. The last is a membrane-anchored transferrin of
97 kDa, first identified on the surface of human melanoma cells (17).
Transferrins and related proteins are composed of two homologous
halves, each similar in length to the repeat unit in p150 (16). The
internally duplicated sequence is reflected in the three-dimensional
structure, which is composed of two similar lobes as determined for
human lactoferrin (18) and rabbit serum transferrin (19). In these
proteins each lobe bound a single Fe3+ cation
synergistically with a single
HCO3 (or
CO3
2) anion.
The assignment of the NH2-terminal residue of the mature p150 (Gly-1, Figs. 1 and 2) is based on sequence resemblance to the human lactoferrin. In lactoferrin, a Gly residue, immediately preceded by an Ala (in the nascent protein) located 9 residues NH2-terminal to the first conserved Cys, was identified as the NH2-terminal residue of the mature protein (16). In other instances, NH2 termini of mature transferrins were found 7-8 residues NH2-terminal to the first conserved Cys residue.
To permit alignment with animal transferrins (Fig. 3), the
1 repeat of p150 was omitted and the alignment was
started with the
2 repeat. The juxtaposition of the
2 and
repeats with the NH2 and COOH
halves of the transferrins shows that the
repeats include several
insertions with respect to the NH2 halves of the transferrins. The
repeat is closer in size to the COOH halves of
animal transferrins but still contains a 12-residue insertion as well
as several shorter insertions.
The amino acid residues identified as iron ligands in rabbit serum
transferrin and human lactoferrin (numbering as in the human
lactoferrin, Fig. 3) are Asp-60, Tyr-92, Tyr-192, and His-253 in the
NH2 lobe and Asp-395, Tyr-435, Tyr-528, and His-597 in the
COOH lobe. In p150, all three repeats contain a Gly instead of Asp-60,
the two Tyr residues are conserved, and the His is replaced by Asn in
1 and
2 and by Gln in
. Residues
involved in HCO3
1
(CO3
2) binding in the
NH2 and COOH lobes of animal transferrins are Arg-121 and
Arg-465, respectively. In all three repeats of p150 these Arg residues
are replaced by Lys, which, interestingly, is invariably preceded by an
Arg residue.
In addition to iron and anion liganding residues, transferrins
characteristically contain conserved Cys residues involved in disulfide
bond formation (16). Of the 11 Cys residues conserved between the
NH2 halves of the transferrins shown (Fig. 3) 10 are conserved in the repeats of p150. Of the 14 Cys residues conserved in the COOH halves, 12 are conserved in the
repeat of p150. Altogether, p150 retains many of the structural features characteristic of animal transferrins.
Northern blot hybridization
was used to assess whether p150 induction following a hyperosmotic
shock involved gene activation. The analysis for p150 transcripts was
conducted in parallel to immunoblot analysis for p150 antigens. The
results (Fig. 4) indicate that the p150 transcript level
rises coordinately with the level of the protein. Hence, p150
accumulation appears to be transcriptionally regulated.
Regulation of p150 by Iron Availability
Because p150 was originally found to be induced in high salinities, the possibility was considered that such conditions imposed an iron limitation on the cells which could be compensated by p150 overproduction. One could therefore expect that p150 may be induced by iron limitation per se, even in relatively low NaCl concentrations.
To examine this possibility, cells growing in complete medium
containing 0.5 M NaCl were resuspended in a medium without
added iron (concentration of iron introduced as a contaminant of the salts used to prepare the medium was less than 0.5 µM).
In a medium buffered at pH 7.4, a considerable increase in p150 was
already noticed 8 h after transfer to the new medium, and by
24 h the level of p150 increased severalfold over its initial
level. No induction of p150 was observed in cells incubated in the same medium but with added iron (Fig. 5).
Pronase Sensitivity and Iron Binding to p150
To examine the
extracellular exposure of p150, Pronase digestion was conducted with
cells grown in 0.5 M NaCl (Fig.
6A). Although the level of the protein is
relatively low in this salt concentration (3), it was still easily
detectable in the immunoblot analysis. The results indicate that p150
is degraded in intact cells treated with Pronase, the extent of
digestion depending on the enzyme concentration. Microscopic
examination indicated that Pronase digestion did not cause cell
lysis.
To explore the possibility that the function of p150 involved iron binding, algal cells were grown for several generations in the presence of 59Fe. A plasma membrane fraction isolated from these cells was solubilized with Triton X-100, and the proteins were resolved by nondenaturing PAGE. The position of p150 was first established by parallel immunoblot analysis with anti-p150 antibodies (not shown). The electrophoretic mobility of p150 in the nondenaturing gel was in agreement with the protein being a monomer in its native form. The results (Fig. 6B) indicated radioactive labeling of the band corresponding to p150. A second dimension resolution on SDS-PAGE confirmed that the radioactive band was constituted mainly of the 150-kDa polypeptide with traces of p60, a salt-induced plasma membrane protein identified recently as an internally duplicated carbonic anhydrase (20). As is obvious from the analysis, native p60 is not radioactively labeled. Hence, the radioactivity is associated with p150.
A protein accumulating in the unicellular alga D. salina in response to high salt is shown here to be closely related to the animal transferrin family. Most known representatives have been implicated in functions of iron binding and delivery as well as the control of free iron levels in biological fluids (5-7) .
A considerable number of transferrins, e.g.
melanotransferrin, salmon transferrin, and insect transferrins, do not
retain the entire set of the five amino acid ligands for
Fe3+ and HCO31
(or CO3
2), as determined
for serum transferrin and lactoferrin. In some cases different residues
occupy these positions in each of the two lobes, e.g. in the
salmon transferrin (Fig. 3) the NH2 lobe Arg-121 is
replaced by Lys. In the human melanotransferrin COOH lobe, Ser replaces
Asp-395 as well as Arg-465. In insect transferrins (21) and the
bullfrog saxiphilin (22), replacements of the canonical liganding
residues occur in both lobes.
The presence of identical sets of putative liganding residues in the three repeats of p150 suggests the existence of three similar iron binding sites. Of the three replacements of canonical ligands (Asp to Gly, His to Asn or Gln, and Arg to Lys) the potentially most significant is the Asp to Gly substitution as Gly cannot serve as an iron ligand. In this respect it is noteworthy that in all three p150 repeats, an Asn residue, not conserved among animal transferrins, is found two residues COOH-terminal to the position of the Asp to Gly replacement. This Asn might potentially contribute to iron coordination.
In its localization on the cell surface p150 most resembles melanotransferrin (17, 23), a 97-kDa protein first characterized as a cell surface marker for human melanoma cells, as well as an 80-kDa transferrin-like protein from fetal intestinal epithelial cells (24). Both of these proteins are attached to the cell membrane not through membrane-spanning helices but via a glucosylphosphatidylinositol anchor added to the COOH-terminal residue exposed by proteolytic removal of a short COOH-terminal peptide. The algal p150 is a largely hydrophilic protein in which the transferrin-resembling repeats are followed by a ~100-residue COOH-terminal extension ending with a mildly hydrophobic sequence. Whether p150 is also attached to the plasma membrane by a post-translationally added anchor and what is the functional significance of its COOH-terminal extension in membrane attachment are intriguing questions yet to be answered.
The involvement of p150 in iron uptake is suggested by its induction under conditions of iron limitation, even in relatively low salinities. In view of these results, the induction of p150 in high salinities presumably reflects a decline in effective iron availability under these conditions. This decline may result, for example, from the effect of salt on Fe3+ solubility or the interference by salt in the iron uptake machinery. Moreover, in cells grown with 59Fe3+, p150 becomes radioactively labeled, demonstrating the ability of this protein to bind iron.
The mode of action of p150 might resemble that of the membrane-anchored p97, which has been shown recently to act in iron uptake via a mechanism other than receptor-mediated endocytosis of Fe-transferrin (23). The details of this mechanism are still largely unknown except for the distinction between an initial iron-binding step and a subsequent energy-dependent iron internalization. Similar to p97, p150 in intact cells is Pronase-sensitive, implying that p150 is extracellularly exposed. Thus, p150 is a transferrin-like protein that retains activity in the high salinities characteristic of the natural habitats of the algae. The significance of the potentially triple-lobe structure or other structural features in the function and presumed salt stability of p150 remains to be clarified.
Transferrin-like proteins were so far identified only in animals. In bacteria, several periplasmic proteins involved in active transport of ions, amino acids, and sugars show similarity in three-dimensional structure, but not in amino acid sequence, to single lobes of transferrins (6). Of special interest is a 34-kDa periplasmic Fe3+-binding protein from pathogenic Neisseria which resembles human transferrin spectroscopically and functionally but not in primary sequence (25). The identification of a transferrin variant in a green alga points to an earlier evolution of the eukaryotic-type transferrins than hitherto thought. The original function of such proteins could have been of the type exhibited by Dunaliella, i.e. in the uptake of iron or possibly other nutrients from the medium.
The first two authors contributed equally to this work.
The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) U77059[GenBank].