©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
A Sensory Transducer Homologous to the Mammalian Peripheral-type Benzodiazepine Receptor Regulates Photosynthetic Membrane Complex Formation in Rhodobacter sphaeroides 2.4.1 (*)

(Received for publication, May 22, 1995; and in revised form, June 26, 1995)

Alexei A. Yeliseev Samuel Kaplan (§)

From the Department of Microbiology and Molecular Genetics, Medical School, University of Texas Health Science Center at Houston, Houston, Texas 77030

ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES

ABSTRACT

The Rhodobacter sphaeroides 2.4.1 tryptophan-rich sensory protein gene, tspO (formerly crtK, ORF160) encodes a 17-kDa protein which has an unusually high content of aromatic amino acids in general and of L-tryptophan in particular. The TspO protein was localized to the outer membrane of aerobically grown R. sphaeroides 2.4.1 by use of a polyclonal antibody against the purified protein. This protein is present in severalfold higher levels in photosynthetic as opposed to aerobic grown cells. Although tspO lies within the crt gene cluster, null mutations have an intact carotenoid biosynthetic pathway. In the TSPO1 mutant there was an increased production of carotenoids and bacteriochlorophyll relative to the wild type, particularly when cells were grown aerobically or semiaerobically. When present in trans the tspO gene restored ``normal'' pigment production to TSPO1. The effect of the tspO gene on pigment production was shown to take place at the level of gene expression. Because the tspO gene product of R. sphaeroides 2.4.1 shows significant sequence homology and similarity to the peripheral-type benzodoazepine receptor from mammalian sources, TspO-specific antibodies when probed against liver and kidney mitochondrial protein showed strong cross-reactivity. The role of TspO in R. sphaeroides 2.4.1 and its relation to photosynthesis gene expression are discussed.


INTRODUCTION

Rhodobacter sphaeroides is a member of the proteobacteria, and it is characterized by its metabolic versatility including growth either chemoheterotrophically or photoheterotrophically. A decrease in oxygen level results in the induction of the photosynthetic membrane system designated the intracytoplasmic membrane (ICM). (^1)The ICM contains all of the components necessary to convert light energy into chemical energy during phototrophic growth. The ICM is also gratuitously synthesized by R. sphaeroides during anaerobic growth in the dark in the presence of an alternative electron acceptor, such as dimethyl sulfoxide (Me(2)SO). While ICM synthesis and composition are known to be tightly regulated, the molecular mechanisms which govern the biosynthesis and assembly of the ICM are only beginning to yield to molecular genetic analysis(1) .

Carotenoids (Crt) in addition to bacteriochlorophyll (Bchl) are an important structural component of the ICM. They take part in the entrapment and utilization of light energy, and furthermore, have an important antioxidative function during aerobic growth. The crt gene cluster of Rhodobacter capsulatus has been well characterized by(2, 3) , and the genes and likely enzymatic activities which they encode have been discussed. In R. sphaeroides, these genes have been recently shown to occupy a similar arrangement as in R. capsulatus(4) .

According to the phenotype of a number of Crt mutants in R. capsulatus(3) and in R. sphaeroides NCIB8253 (4) enzymatic activities have been assigned to seven of the eight genes constituting this cluster but not to crtK, herein designated tspO (tryptophan-rich sensory protein). Based on the amino acid sequence deduced from the nucleotide sequence it was suggested that TspO was an integral membrane protein. Most of the enzymes of the carotenoid biosynthetic pathway were also shown to be localized to the cell membrane, and it was proposed that TspO is a site for docking of the enzymes involved in carotenoid biosynthesis(3) . However, no evidence either for this or for any other physiological activity associated with this protein has been available, until now.

Comparison of the deduced amino acid sequence of the R. capsulatus TspO with that of adrenal peripheral-type benzodiazepine receptor (PBR) revealed a high degree of homology between the two proteins; of the 129 amino acid residues comprising 75% of each of these proteins, there were approximately 35% identity and a further 15% conservative replacements(5) .

The PBR is present in many types of mammalian tissues including kidney, liver, brain, adrenal gland, testes, etc.(6) . It has been shown that this 18-kDa protein is localized to the outer mitochondrial membrane and is associated with an outer membrane, voltage-dependent anion channel (VDAC) and adenine nucleotide carrier, which is an inner mitochondrial membrane localized protein. The PBR binds with nanomolar affinity to a variety of benzodiazepines as well as to dicarboxylic porphyrins(7) . A number of metabolic activities have been ascribed to the PBR including regulation of steroidogenesis and participation in tetrapyrrole metabolism. However, the precise physiological function of this mitochondrial membrane protein still remains unclear.

Here, we attempt to bring together this disparity of observations by defining a physiologic role for TspO in R. sphaeroides 2.4.1, describing its cellular localization, and further showing that antibody produced against TspO cross reacts quite specifically with a protein(s) of the rat mitochondrion.


EXPERIMENTAL PROCEDURES

Bacterial Strains, Plasmids, Media, and Growth Conditions

Bacterial strains and plasmids used in this study are described in Table 1. Cultures of R. sphaeroides 2.4.1 and its derivatives were grown in Sistrom's minimal medium A containing 0.4% succinate as a carbon source (8) as described previously(9, 10) .



Cell growth was monitored turbidometrically with a Klett-Summerson colorimeter using a no. 66 filter. 1 KU is equivalent to 1 10^7 cell/ml. To minimize antibiotic photooxidation(11) , liquid cultures of R. sphaeroides grown photoheterotrophically in the presence of tetracycline were placed behind a CS 7-69 filter (620-1100 nm; Corning Glass Works, Corning, NY). Strains of Escherichia coli were grown as described previously(12) . When appropriate, antibiotics were added to the following final concentrations: ampicillin (Ap), 100 µg/ml; kanamycin (Km), 25 µg/ml; spectinomycin (Sp), 50 µg/ml; streptomycin (Sm), 50 µg/ml; and tetracycline (Tc), 10 µg/ml for E. coli, 1 µg/ml for R. sphaeroides. Conjugal matings between E. coli and R. sphaeroides were performed as described by Moore and Kaplan(13) .

beta-Galactosidase and Alkaline Phosphatase Activity in Cell Extracts

R. sphaeroides cultures were grown to a cell density of approximately 1.8 10^8 cells/ml, and chloramphenicol was added to a final concentration of 80 µg/ml to terminate protein synthesis. Assay of beta-galactosidase activity in cell extracts was performed as described previously(13) . All experiments involving beta-galactosidase assay were performed at least twice, with results being reproducible to within ±15%.

In vitro alkaline phosphatase (APase) activity was determined following the hydrolysis of o-nitrophenyl-phosphate as described previously(14) .

Cell Fractionation

Subcellular fractions of R. sphaeroides 2.4.1 were prepared by the method of Weiss (15) as modified by Tai and Kaplan(16) . The protease inhibitor phenylmethylsulfonyl fluoride was added to cell extracts at a final concentration of 1 mM. Protein concentration was determined using the Pierce reagent (Pierce); bovine serum albumin was the standard.

Carotenoid and Bacteriochlorophyll Determination

Pigments were extracted from R. sphaeroides 2.4.1 cells and quantitated according to procedures described(8) . HPLC analysis of pigments was done on a Waters HPLC system equipped with a model 411 absorbance detector. Suitable pigment separation was achieved with a Spherisorb ODS2 (Rainin Instruments Company, Emeryville, CA) reversed-phase column (25 0.46 cm) using a gradient elution system described(17) .

Spectrophotometric Analysis

R. sphaeroides 2.4.1 cells were harvested by centrifugation (10 min, 10,000 g, 4 °C) and disrupted by sonication for 5 min (50% duty cycle). Unbroken cells and cell debris were removed by centrifugation (30 min, 30,000 g, 4 °C). Absorption spectra were analyzed on an SLM DW2000 double-beam UV-VIS-IR spectrophotometer (SLM-Aminco Instruments, Urbana, IL). Equivalent protein concentrations of the cleared lysate were used when the spectral profiles of different strains of R. sphaeroides were compared. The extinction coefficients reported by Meinhardt et al.(18) were used to calculate the levels of individual spectral complexes.

Molecular Techniques

Standard procedures were used for plasmid isolation, restriction endonuclease digestion, isolation of DNA fragments from gels, ligation, and other molecular biological techniques(12, 19) . Sequencing was done with an ABI 373A automatic DNA sequencer (Applied Biosystems Inc., Foster City, CA) at the DNA Core Facility of the Department of Microbiology and Molecular Genetics.

DNA Sequence Analysis

Sequence analyses were performed with the computer programs DNA Strider (Institut de Recherche Foundamentale, Commissariat a l'Energie Atomique, Paris, France). Programs FASTA and TFASTA were used to screen EMBL and GenBank data bases for sequence similarities. These programs use algorithms based on that of Lipman and Pearson(20) . The program Peptidestructure was used to predict the secondary structure of TspO.

Construction of Plasmids

Plasmid pUI2701 was constructed by introducing of 1.1-kb KpnI fragment of pUI1124 containing tspO under PrrnB into the KpnI site of the broad host range expression vector pRK415.

Plasmids carrying crtA::lacZ and crtI::lacZ transcriptional fusions were constructed by the blunt end ligation of 0.13-kb PstI fragment of pUI3101, containing promoter region for divergently transcribed genes, crtA and crtI, into the XbaI site of pLX1 vector, Sm^r/Sp^r, in both orientations. The presence and orientation of the insert were verified by sequencing from the 5` end of the lacZ toward the promoter region. Plasmid containing crtA::lacZ fusion was designated pUI2711, and plasmid carrying crtI::lacZ was designated pUI2712.

Plasmid pUI2715 carrying a translational fusion of tspO and the glutathione S-transferase (GST) gene was constructed by ligation of 0.7-kb BamHI-EcoRI fragment of pUI1124, containing tspO, into the BamHI-EcoRI sites of pGEX-2TK vector (Pharmacia).

SDS-PAGE, Western Blot Analysis, and N-terminal Amino Acid Sequencing

SDS-PAGE and Western blots were performed as described (12) . Cultures were grown and cells broken as described(9) . Western blots were probed with antibodies against the major outer membrane protein or against TspO.

N-terminal amino acid sequence of the R. sphaeroides 2.4.1 major outer membrane protein was performed at the analytical chemistry center, UT Medical School, on an Applied Biosystems 477 Protein Sequencer using a procedure described(21) . Protein was electroblotted onto polyvinylidene difluoride membrane, stained with Coomassie Blue, and sequenced directly.

Expression and Partial Purification of TspO-GST Fusion Protein

TspO-GST fusion protein was expressed in E. coli JM109 from pUI2715 after induction with 100 mM beta-isopropyl-thiogalactoside for 3 h. Cells were disrupted by French Press and fractionated by centrifugation (10 min, 20,000 g, 1 h, 150,000 g). Fractions were subjected to SDS-PAGE, and the TspO-GST protein was found to be localized to the membrane fraction. Membranes were solubilized with 1% N-lauroylsarcosine in phosphate-buffered saline (140 mM NaCl, 2.7 mM KCl, 10.1 mM Na(2)HPO(4), 1.8 mM KH(2)PO(4), pH 7.3) and subsequently dialyzed against 0.05% N-lauroylsarcosine in the same buffer. The resulting solution was treated with thrombin (10 units of thrombin/mg protein) at 25 °C overnight. Cleavage products were run at 15% SDS-PAGE, and a strip of gel corresponding to the 17-kDa protein (TspO) was removed and used as an antigen for raising antibodies against TspO.

Antibodies

Antiserum against TspO was obtained from Cocalico Biologicals (Cocalico Biologicals, Inc., Reamstown, PA) using standard procedures. The TspO isolated from SDS-PAGE was used to immunize two white New Zealand rabbits. The immune and preimmune sera were characterized for their reactivity against total E. coli and R. sphaeroides 2.4.1 protein and membrane protein. For immunological detection of transferred proteins, antisera were diluted in TBST (20 mM Tris, pH 7.4, 500 mM NaCl, 0.05% Tween 20) plus 5% bovine serum albumin and incubated with protein transferred to nitrocellulose filters for 1.5 h at room temperature. After extensive washing in TBST and incubation with anti-rabbit alkaline phosphatase secondary antibodies (1:30,000) for 1 h at room temperature, the blot was developed by using nitroblue tetrazolium and 5-bromo-4-chloro-3-indolyl phosphate.

Antibodies against TspO were affinity purified using the modification of a protocol described(22) . A preparative SDS-PAGE was loaded with approximately 0.8 mg of protein extract containing TspO and subjected to electrophoresis. Proteins were electrophoretically transferred to a nitrocellulose membrane; the protein band corresponding to TspO was located, removed from the membrane, and blocked 1.5 h in 5%BSA in TBST. After washing three times for 15 min each in TBST, the nitrocellulose strip was incubated overnight at 4 °C in a solution containing 1 ml of serum and 5 ml of TBST. The nitrocellulose strip was washed three times for 15 min each in TBST, and antibodies were eluted with 100 mM glycine, pH 2.2 (five times, 1 ml each). The glycine solution was neutralized with 1 M Tris pH 9.0, and the resulting solution was characterized for antibody reactivity against R. sphaeroides 2.4.1 membrane proteins.

Antibodies against the major outer membrane protein were prepared by C. Deal and S. Kaplan(23) .

Photoafinity Labeling of the R. sphaeroides 2.4.1 Major Outer Membrane Protein

Membrane samples (20 µl) containing 50 µg/ml protein in 50 mM Tris-HCl buffer, pH 7.5, were preincubated with [N-methyl-^3H]flunitrazepam (2 nM) for 30 min and then irradiated for 15 min by a Black-Ray ultraviolet lamp (Ultraviolet products, San Gabriel, CA). The samples were then removed from under the lamp and excess of unlabeled flunitrazepam (10 µM) was added in order to displace any remaining [^3H]flunitrazepam not covalently bound to protein.

Proteins incorporating the radiolabeled drug were estimated using SDS-PAGE electrophoresis in 12.5% gel(24) . The gel was then treated with EN^3HANCE (DuPont Biotechnology Systems, Boston, MA) according to the procedure recommended by the manufacturer and exposed to Kodak film (Eastman Kodak Co.) for 1.5 mo at -80 °C.

Materials

Restriction endonucleases and nucleic acid-modifying enzymes were purchased from New England Biolabs, Inc. (Beverly, MA). Antibiotics, ONPG, X-Gal, X-P, and vitamins were obtained from Sigma. Unlabeled benzodiazepines were purchased from Research Biochemicals International (Natick, MA). [N-methyl-^3H]Flunitrazepam was from Amersham (Amersham Corp.). All other chemicals were of reagent grade purity and were used without further purification.


RESULTS

Cloning, DNA Sequence Determination, and Inactivation of the Chromosomal tspO

The 2.1-kb SstI fragment of pAS204 which complemented the mutation(s) in mutant CL(25) was cloned into pBSIIKS+ in both orientations relative to vector sequences. The DNA sequence of both strands was determined using overlapping clones covering the 2.1-kb insert. (^2)Computer analysis (26) suggested that two open reading frames (ORFs) which were likely to encode proteins were present within the fragment. Comparison of the DNA sequences of these ORFs to computer data base sequence libraries using software described under ``Experimental Procedures'' indicated significant homology to the DNA sequence of the crtB and crtK genes of R. capsulatus. The ORF, homologous to crtK, was 480 nucleotides in length (Fig. 1) and shared 60% sequence identity with the R. capsulatus gene. There is 99.7% identity between the nucleotide sequences encoding tspO from R. sphaeroides 2.4.1 and from R. sphaeroides NCIB8253(4) .


Figure 1: Alignment of amino acid sequences of the mammalian peripheral-type benzodiazepine receptors with R. sphaeroides and R. capsulatus TspO proteins. The sequences are as follows: HsPkbS, human; MmPkbS, mouse; RnPkbS, rat; BtPkbS, bovine mitochondrial peripheral-type benzodiazepine receptors; RcCrtK, R. capsulatus CrtK; RsNCIB, R. sphaeroides TspO from wild type strain NCIB8253, and RsTspO, R. sphaeroides 2.4.1 TspO. In bold are amino acid residues conserved in all seven sequences.



Using the cartridge encoding kanamycin resistance from pUC4K, a tspO disruption in pUI1108 was constructed (Table 1). This construction was subsequently used to generate the pSUP202-derived vector pUI1110. One Km^rTc^s transconjugant was designated TSPO1 after Southern hybridization confirmed the replacement of the wild type tspO by the tspO::Km construction from pUI1110. The absence of vector sequences in the mutant was confirmed when a radioactively labeled pSUP202 probe failed to hybridize to genomic DNA from the mutant.^2

Analysis of the Deduced Amino Acid Sequence for tspO

48% identity was observed between the aligned residues for the deduced amino acid sequences of the R. sphaeroides 2.4.1 tspO and R. capsulatus crtK gene, with an additional 23% of the aligned residues being similar (Fig. 1). Seven tryptophan residues were conserved in both sequences. Data base searches revealed TspO was 35% identical to the human peripheral-type benzodiazepine receptor with an additional 21% of the aligned residues being similar (Fig. 1). TspO was also 57% similar (34% identical) to bovine PBR, 55% similar (33% identical) to mouse PBR, and 54% similar (33% identical) to the PBR from rat adrenal mitochondria. Eight of the 12 tryptophan residues conserved in the four mammalian PBRs are also conserved in the R. sphaeroides 2.4.1 TspO sequence. The 158-amino-acid TspO was predicted to have a molecular mass of 17 kDa.

Production of Pigments and Spectral Complexes by TSPO1 Grown Anaerobically

In order to approach the role of the TspO protein a number of experiments with the mutant TSPO1 harboring a disruption of tspO by the insertion of the Km^r gene were undertaken. No difference in growth rates between wild type and TSPO1 under a variety of cultivation conditions was observed (data not shown). The mutant strain was found to produce normal levels of ICM and all photosynthetic complexes during anaerobic growth in the dark in the presence of Me(2)SO. Spectral analysis of the membranes from dark/Me(2)SO grown cultures gave the same absorbance peaks for wild type and mutant cells. The only differences observed were in membrane preparations from TSPO1 cells grown photoheterotrophically at either 10 or 3 W/m^2, which gave absorbance spectra slightly different from that of the wild type (Fig. 2). The B800-850/B875 ratio was 30-40% lower for TSPO1 in comparison to wild type (Table 2). What is clear is that the primary effect resulting in the altered ratio is the increased levels of B875 complex relative to the B800-850 complex in TSPO1.


Figure 2: Absorption spectra of R. sphaeroides 2.4.1 membrane preparations. Cells were grown photoheterotrophically in the light at 10 W/m^2. Samples of equal protein concentration (1 mg/ml) were examined as described under ``Experimental Procedures.''





To assess the abundance of the photopigments (Crt and Bchl), these were extracted from 2.4.1 and TSPO1 cells grown at various light intensities or in the presence of Me(2)SO in the dark. Quantitation of the total Crt and total Bchl extracted from mutant and wild type cells did not reveal any significant difference. HPLC analysis of the composition of the Crt demonstrated that the major carotenoids (spheroidene, spheroidenone, and neurosporene) were accumulated by the wild type and mutant strain in essentially the same amounts.

Production of Pigments under Semiaerobic Conditions

During chemoheterotrophic growth in the presence of oxygen, mutant TSPO1 cells were more intensively colored than the wild type cells. Semiaerobic cultures of R. sphaeroides 2.4.1 and TSPO1 were grown to follow the accumulation of Crt and Bchl by cells cultivated under conditions of limited oxygen availability (Table 3). As is evident, cells of TSPO1 accumulated severalfold more Crt and Bchl than those of wild type. Plasmid pUI2701, containing tspO under control of the strong rrnB promoter(27) , was used to study the effect of tspO in trans on pigment accumulation. When present in TSPO1, pUI2701 led to substantial decreases in both Bchl and Crt accumulation to below wild type levels.



Because the low oxygen tension used in these experiments is probably a more accurate reflection of what actually takes place in nature, we followed the dynamics of pigment accumulation in aerobic cultures shifted to lower oxygen tensions. As is evident from Fig. 3, TSPO1 responded to oxygen deprivation more rapidly than the wild type: significant differential increases in both Crt and Bchl accumulation were observed within 1.5 h after the cultures were shifted to low oxygen. After approximately 15 h of growth, the accumulation of both Crt and Bchl by the wild type was equivalent to that of TSPO1. At the cell densities reached after this time, there is virtually no free oxygen in the culture.


Figure 3: Pigment accumulation by R. sphaeroides 2.4.1 and TSPO1 cells. Cells were grown aerobically at 30%O(2)/68%N(2)/2%CO(2) to an optical density of 20 KU and shifted to semiaerobic conditions (3%O(2)/95%N(2)/2%CO(2)) at the time point indicated by the arrow. Pigments were extracted and quantified as described under ``Experimental Procedures.'' Carotenoid accumulation by R. sphaeroides 2.4.1 (bullet) and TSPO1 (). Bacteriochlorophyll accumulation by R. sphaeroides 2.4.1 (black square) and TSPO1 (). Each point represents a mean of three experiments with deviations being less then ± 15%.



Analysis of puc, puf, crt, and bch Gene Transcription

Because of the differences in Crt and Bchl accumulation described above, we tested the possibility that the TspO might be directly or indirectly involved in the transcriptional control of the biosynthesis of these photopigments. Therefore, transcriptional lacZ fusions with the promoter region for the divergently transcribed carotenoid biosynthesis genes crtA and crtI were constructed (see Table 1) and introduced into both R. sphaeroides 2.4.1 and TSPO1 cells. As is evidenced by Table 4, TSPO1 cells exibited 2-5-fold higher expression of both crtA and crtI than wild type cells. Introduction of tspO in trans on pUI2701 into TSPO1 cells lowered crt gene expression. In cells grown photoheterotrophically at 10 W/m^2 the absence of TspO led to a 3-fold increase in crtA expression; the effect on crtI was smaller. The expression of crtA and crtI were the same in both mutant and 2.4.1 cells grown in the dark in the presence of Me(2)SO.



Expression of the bchF::lacZ transcriptional fusion was also higher in TSPO1 cells than in 2.4.1 grown either aerobically or semiaerobically. Expression of the puc operon encoding the structural polypeptides for B800-850 spectral complex was found to be 2-3-fold higher in TSPO1 cells grown aerobically or semiaerobically when compared to wild type. On the other hand, there were no differences in the expression of a puf::lacZ transcriptional fusion between wild type and TSPO1 grown under any of these conditions (data not shown).

Characterization of tspO::phoA Gene Fusions

Due to the significant homology between TspO and the membrane-localized mammalian PBRs (Fig. 1) it was anticipated that TspO would be membrane-localized in vivo. The hydrophobicity plot of TspO indicated the possible presence of at least four membrane-spanning domains. Therefore, two translational gene fusions were constructed between the N-terminal portion of tspO and the genetically engineered E. coli alkaline phosphatase (APase) gene phoA which is missing the DNA sequence encoding the signal peptide(13) .^2 The fusion containing the 52 N-terminal amino acids of TspO (pUI1180) exhibited APase activity in R. sphaeroides 2.4.1 cells grown both aerobically or photosynthetically (300 and 7500 units of specific activity, respectively). A second fusion following the 89 N-terminal amino acids (pUI1182) was not active under either set of conditions. Thus, these results are consistent with the conclusion that TspO resides within the cell membranes.

Immunochemical Detection of TspO

In order to obtain antibodies against this polypeptide, we cloned tspO under the highly regulated tac promoter into the expression vector pGEX-2TK (Pharmacia) at the BamHI-EcoRI sites, and the construction was designated pUI2715. The protein was then overexpressed in E. coli as a fusion with GST after induction with isopropyl-beta-D-thiogalactoside. TspO-GST constituted more than 10-15% of the cellular protein as evidenced by SDS-PAGE. The fusion protein was purified and antibodies against TspO obtained as described under ``Experimental Procedures.''

Fig. 4A represents an SDS-PAGE of TspO-GST expressed in E. coli and stained with Coomassie Blue. The band of 44 kDa (lane 2) disappeared following treatment with thrombin and was replaced by two new bands (lane 3) corresponding to GST (27 kDa) and TspO (17 kDa). Using antibodies raised against TspO (Fig. 4B) revealed one immunoactive band in preparations treated with thrombin (lane 2). In the sample of GST-TspO (Fig. 4B, lane 1), both the fusion protein and several bands, apparently corresponding to products of nonspecific cleavage, were detected.


Figure 4: Overexpression of the TspO-GST fusion protein in E. coli.A, Coomassie Brilliant Blue-stained SDS-PAGE. TspO-GST fusion protein was overexpressed in E. coli JM109. Cells were disrupted by French Press, fractionated, and the membrane fraction containing TspO-GST was solubilized with 1% lauroyl sarcosine as described under ``Experimental Procedures.'' Lane 1, molecular weight standards; lane 2, solubilized TspO-GST; lane 3, solubilized extract treated with thrombin; lane 4, affinity purified fusion TspO-GST treated with thrombin. B, immunoblot analysis of TspO-GST and TspO. Immunoblot was performed using affinity purified antibodies raised against TspO. Lane 1, solubilized membrane fraction of E. coli containing TspO-GST fusion protein; lane 2, the same sample treated with thrombin.



Membrane fractions of R. sphaeroides 2.4.1 and TSPO1 were separated by SDS-PAGE and probed with TspO-specific antibody. In Fig. 5, one band corresponding to a protein of 17 kDa was visible in the outer membrane preparations from 2.4.1 cells grown semiaerobically (lane 1) or photoheterotrophically (lane 3). No immunoactive band could be detected in TSPO1 (lanes 4 and 5). TspO expressed in E. coli from the construct pUI2715 (Fig. 5, lane 6) migrated more slowly in SDS-PAGE than its homologue from the membrane fraction derived from R. sphaeroides 2.4.1. This difference correlated with the presence of an additional 13 amino acid residues in the genetically engineered protein expressed in E. coli.


Figure 5: Immunoblot analysis of the TspO protein in R. sphaeroides 2.4.1. Cells of R. sphaeroides 2.4.1 and TspO1 were grown semiaerobically or photoheterotrophically at 10 W/m^2 and membrane preparations obtained as described under ``Experimental Procedures.'' Proteins were separated in SDS-PAGE (15%), electroeluted onto nitrocellulose membranes, and probed with antibodies raised against TspO. A, immunoblot analysis. Lanes 1 and 3, outer membrane preparations from semiaerobically and photosynthetically grown R. sphaeroides 2.4.1 cells, respectively; lane 2, inner membrane preparation from semiaerobically grown 2.4.1; lanes 4 and 5, outer membrane and inner membrane preparations from semiaerobically grown TSPO1 cells; lane 6, preparation of overexpressed in E. coli TSPO-GST cleaved with thrombin; lane 7, molecular weight marker. B, SDS-PAGE gel stained with Coomassie Blue. Lanes are the same as in A.



To gain additional insight into the question of how TspO acts as a sensory transducer, membranes from both aerobic and photosynthetic grown R. sphaeroides 2.4.1 cells were reacted with anti-TspO antibodies following separation on SDS-PAGE (Fig. 5, lanes 1 and 3). Membranes from aerobic grown cells showed low levels of TspO in agreement with the APase results. However, the bulk of the reactive species migrated with an apparent size of 36 kDa. On the other hand, the level of TspO in photosynthetic grown cells was considerably increased, but the immunoactive species had a size of 17 kDa.

Experiments with Benzodiazepines

R. sphaeroides 2.4.1 was cultured either photoheterotrophically (10 W/m^2 light intensity) or in dark/Me(2)SO in the presence of varying concentrations of the benzodiazepines flurazepam or flunitrazepam. The growth rate was not affected by either drug in the range of concentrations from 0 to 80 µg/ml. However, when the formation of spectral complexes was examined (Fig. 6A), we observed that the amount of the B800-850 complex was reduced by 40-45% when cells were incubated in the presence of 50 µg/ml of flunitrazepam, and the amount of B875 complex remained the same as in control cells grown without the drug. An even stronger effect was observed in the presence of flurazepam which inhibited the accumulation of the B800-850 complex by 90-95% (Fig. 6A). The formation of the B875 complex was decreased by 60-65% at this concentration of flurazepam. However, the same effects were observed in experiments with mutant strain TSPO1 (Fig. 6B), thus eliminating the possible involvement of TspO in the benzodiazepine sensitivity of R. sphaeroides 2.4.1


Figure 6: Absorption spectra of membrane preparations from R. sphaeroides 2.4.1 cells grown in presence of flurazepam. A, R.sphaeroides 2.4.1; B, R. sphaeroides TSPO1. Cells were grown photoheterotrophically in the light at 10 W/m in the presence of various concentrations of flurazepam, as indicated, and membrane fractions obtained as described under ``Experimental Procedures.'' Samples of equal protein concentrations (1 mg/ml) were examined.



To obtain additional insight into the possible target, we used [N-methyl-^3H]flunitrazepam as a means of following the binding of this drug to cellular proteins. Cells of either R. sphaeroides 2.4.1 or TSPO1 grown aerobically or photoheterotrophically were fractionated according to procedures described under ``Experimental Procedures.'' These preparations were preincubated with ^3H-labeled flunitrazepam and UV-cross-linked. SDS-PAGE fractionation of proteins and subsequent radioautography revealed only one major radioactive band in the outer membrane preparation corresponding to a protein of approximately 47 kDa (Fig. 7, A and B). No specific binding of [^3H]flunitrazepam was detected in either the inner membrane or cytoplasmic proteins. One potential difficulty in detecting benzodiazepine binding to TspO is the very low level of TspO relative to the major outer membrane protein in R. sphaeroides 2.4.1; binding to TspO could be masked, and then special precautions might have to be exercised.


Figure 7: Identification of the major outer membrane protein as a [^3H]flunitrazepam binding species. A, Coomassie Brilliant Blue-stained SDS-PAGE. R. sphaeroides 2.4.1 and TSPO1 cells were grown semiaerobically and fractionated as described under ``Experimental Procedures.'' Lanes 1 and 4, outer membrane preparations; lanes 2 and 5, inner membrane preparations; lanes 3 and 6, cytoplasmic fraction from 2.4.1 and TSPO1 cells, respectively. B, radioautogram of R. sphaeroides 2.4.1 proteins labeled with [H]flunitrazepam. Lanes are the same as in A. C, immunoblot analysis of major outer membrane protein. Proteins from fractionated cells of R. sphaeroides 2.4.1 were resolved by SDS-PAGE and probed with antibodies raised against major outer membrane protein (porin). Lanes 1 and 4 are the same as in A and B.



Previous work from this laboratory revealed that the major outer membrane protein or porin from R. sphaeroides 2.4.1 migrates at approximately 47 kDa(23) . An antibody raised against this polypeptide was found to react with the same protein binding the labeled drug (Fig. 7C), thus identifying it as the major outer membrane protein. We determined the N-terminal sequence of this polypeptide (EISFSGYAAE) and found it was 44% identical and a further 30% similar to that of the previously reported porin of R. capsulatus(28) .

Reaction of Rat Mitochondria with Antibodies to TspO

When we probed preparations of either kidney or liver, rat mitochondria with antibodies raised against TspO, a strong and highly specific cross-reactivity was observed with three protein species from kidney and with two protein species from liver mitochondria (Fig. 8). In both liver and kidney, immunoactive bands at approximately 30 and 50 kDa were present. In preparation from the kidney mitochondrion additional bands of approximately 35 and 55 kDa were observed; however, these bands were absent from the liver preparation. The relative intensities of immunoactive bands were much higher in preparations from kidney mitochondria which correlates with the observed 2-3-fold higher level of the benzodiazepine binding protein in kidney. (^3)


Figure 8: Immunoblot analysis of mitochondrial proteins. Preparations of rat kidney and liver mitochondria (gift of Dr. M. McEnery) were solubilized in sample buffer, run on a 12% SDS-PAGE, and blotted onto nitrocellulose membranes. Proteins were probed with antibodies raised against TSPO. Lanes 1 and 2, preparations from kidney mitochondria solubilized at 90 and 37 °C, respectively. Lanes 3 and 4, preparations from liver mitochondria, solubilized at 90 and 37 °C. Lane 5, preparation of overexpressed in E. coli TspO-GST protein treated with thrombin.




DISCUSSION

The similarity between the tspO gene cloned from bacterial sources (R. sphaeroides 2.4.1 and NCIB8253, R. capsulatus), and PBRs from various mammalian tissues raises questions of the physiological function(s) and evolutionary relationship between these diverse polypeptides. A number of physiological activities have been ascribed to the PBRs which are localized in the outer mitochondrial membrane, such as the regulation of steroidogenesis and their involvement in porphyrin transport across the mitochondrial membrane. It was proposed that the PBR in association with two proteins VDAC and adenine nucleotide carrier comprises a porphyrin transport site at the junction of the two mitochondrial membranes(6) .

We observed that several benzodiazepines, choosen primarily because of their aqueous solubility, and which are known to bind with high affinity to PBRs, affected the biosynthesis of the B800-850 antenna complex in R. sphaeroides 2.4.1. When present in concentrations 0.02-0.1 mM, flurazepam suppressed complex formation by 50-95% in wild type R. sphaeroides 2.4.1 grown photoheterotrophically. However, the same effect was also observed with TSPO1. Further studies using a ^3H-labeled structural analog of flurazepam, flunitrazepam, demonstrated this drug specifically bound to the major outer membrane protein of R. sphaeroides 2.4.1, whether or not TspO is present. It was recently shown that the R. capsulatus major outer membrane protein, or porin, binds with high affinity some of the tetrapyrrole intermediates in Bchl a biosynthesis(28) . One possibility is that benzodiazepines when present in micromolar concentrations compete for tetrapyrrole-binding sites. However, why the biosynthesis of the B800-850 complex is inhibited to a greater extent than that of the B875 complex still remains unclear. These results may reflect differences in the assembly pathways for each of these macromolecular complexes.

Comparison of the nucleotide sequence of tspO from R. sphaeroides 2.4.1 with that of R. sphaeroides NCIB8253 (4) , revealed 99.7% identity, with three nucleotides absent from the NCIB8253 sequence in the positions between nucleotides 4095 and 4096 (G); 4124 and 4125 (G), and 4146 and 4147 (C), relative to the sequence from 2.4.1. The resulting frameshifts led to a decreased similarity between the two derived polypeptides (91% identity). All nonidentical amino acid residues were found to be localized to the region of the frameshift between positions 62 and 86. The codon usage assessment program indicated five rarely used codons in the DNA sequence from NCIB8253 compared to 2.4.1. However, strains 2.4.1 and NCIB8253 are considered to be similar if not identical (29) on a basis of available sequencing data and AseI DNA digestion patterns.

Disruption of the R. sphaeroides' tspO by insertion of a kanamycin resistance gene did not lead to any significant change in the phenotype of cells grown either aerobically or photosynthetically, except for some small alteration in the ratio between B800-850 and B875 complexes. However, a profound phenotypic difference was observed between the wild type and TSPO1 during transition from aerobic to anaerobic growth. TSPO1 also produced substantially increased levels of both Crt and Bchl relative to the wild type. Studies showed that there was a 3-5-fold effect of TspO on expression of crtA, crtI and bchF in the mutant when compared to the wild type. Transcription of the puc operon was similarly affected in the mutant strain under semiaerobic conditions. Introduction of tspO in trans into TSPO1 mutant or wild type resulted in a severe reduction in pigment accumulation to below the wild type level, which was most evident in cells grown under semiaerobic or aerobic conditions.

Differences in expression of both crt and bch genes between mutant and wild type cells were also detected when cells were grown photoheterotrophically at medium light intensity (10 W/m^2) thus indicating that TspO can exert its effect not only under aerobic conditions, but also during photosynthetic growth. However, mutant cells grown photoheterotrophically at high light intensities (100 W/m^2) or in dark/Me(2)SO, showed no differences in crt, bch, or puc gene expression when compared to the wild type. Therefore, TspO because of its cellular location and its effect on gene expression in response to oxygen or light behaves as a sensor of these environmental stimuli. Both of these stimuli could act through a common element, e.g. redox, or the protein could directly sense changes in both oxygen and light by some unknown mechanism. Reinforcing this latter interpretation is the cellular localization of TspO, i.e. in the outer cell membrane; therefore, whatever this protein detects it probably exists outside the cell, and changes in redox would be less likely. Further, the presence of the apparently dimeric form of TspO in aerobic grown cells and the monomeric form in anaerobic grown cells could be indicative of a mechanism by which TspO functions.

We have previously described the existence of an additional oxygen sensing system in R. sphaeroides 2.4.1, the PrrA system which is typical of a two-component regulatory system and where a decrease in oxygen tension results in an activation of photosynthesis gene expression(30) . The TspO system appears to involve the negative regulation of photosynthesis gene expression. Whether or not TspO acts through the regulatory protein PpsR remains to be determined(31, 32) . However, the possibility exists that a small ligand molecule could be involved in this regulatory pathway as revealed by the effect of benzodiazepines. Thus, R. sphaeroides 2.4.1 appears to have at least two systems able to sense the level of oxygen in the environment. Very recent work (^4)also confirms the presence of the Fnr system of aerobic/anaerobic control in R. sphaeroides 2.4.1. In addition, the TspO system also appears to be able to sense differences in light intensity. We do not know the extent of overlap on photosynthesis gene expression between these regulatory systems.

Antibodies raised against TspO specifically recognize this protein in the outer membrane fraction of R. sphaeroides 2.4.1 cells. Membrane localization of this protein was also supported by the results of the TspO-alkaline phosphatase-fusion analysis which showed high level of APase when conjugated to the 52 N-terminal amino acid portion of TspO. It is known that mammalian PBR interacts with VDAC in the outer mitochondrial membrane and adenine nucleotide carrier, localized to the inner mitochondrial membrane. VDAC is a porin-type protein apparently involved in porphyrin transport across the membrane. It is therefore possible to speculate that in R. sphaeroides 2.4.1 TspO interacts with the major outer membrane protein, which is shown to bind porphyrins and benzodiazepines with high affinity, thus affecting biosynthesis and/or assembly of the photosynthetic antenna complexes through an as yet unknown mechanism.

Analysis of the amino acid sequence of TspO does not predict any potential DNA-binding domains in this polypeptide. Therefore, the pathway and mechanism of signal transmission from the membrane-localized TspO to the DNA-bound transcriptional effector is not clear. It would seem reasonable to assume that there is in addition to TspO an inner membrane-localized component of this pathway. The nature of this hypothetical protein is unknown. Nor do we know how this protein might interact with the repressor component of this pathway. We do know, however, that this pathway does not directly affect puf operon expression, but may do so indirectly through Crt and Bchl availability. Therefore, in future studies we plan to determine the mechanism(s) by which TspO senses changes in O(2) level, the likely response regulator with which it interacts and to further investigate the functional and structural relationships between TspO and the mammalian PBR.


FOOTNOTES

*
This study was supported by GM15590 (to S. K.).The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore by hereby marked ``advertisement'' in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

§
To whom correspondence should be addressed. Tel.: 713-794-1742; Fax: 713-794-1782; skaplan{at}utmmg.med.uth.tmc.edu.

(^1)
The abbreviations used are: ICM, intracytoplasmic membrane; PBR, peripheral-type benzodiazepine receptor; Crt, carotenoids; Bchl, bacteriochlorophylls; Me(2)SO, dimethyl sulfoxide; GST, glutathione S-transferase; PhoA, alkaline phosphatase; VDAC, voltage-dependent anion channel; HPLC, high performance liquid chromatography; kb, kilobase(s); PAGE, polyacrylamide gel electrophoresis; ORFs, open reading frames(s).

(^2)
M. Wood and S. Kaplan, unpublished results.

(^3)
M. McEnery, personal communication.

(^4)
J. Zeilstra-Ryalls and S. Kaplan, manuscript submitted for publication.


ACKNOWLEDGEMENTS

We thank Dr. M. Wood for early work on tspO, Drs. J. Eraso, M. Gomelsky, M. Sabaty, and L. Gong for providing strains and plasmids, and Dr. M. McEnery for the preparations of rat mitochondria.


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