©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
Constrained Peptide Analogues of Transforming Growth Factor- Residues Cysteine 2132 Are Mitogenically Active
USE OF PROLINE MIMETICS TO ENHANCE BIOLOGICAL POTENCY (*)

(Received for publication, May 4, 1995; and in revised form, June 22, 1995)

Stephen G. Chamberlin (1) Karen J. Sargood (2) Audrey Richter (1) John M. Mellor (2) Derek W. Anderson (4) Nigel G. J. Richards (2)(§) David L. Turner (2) Ram P. Sharma (3) Peter Alexander (¶) Donna E. Davies (1)(**)

From the  (1)Cancer Research Campaign Medical Oncology Unit, Southampton General Hospital, Tremona Road, Southampton SO16 6YD, the (2)Department of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, the (3)Department of Biochemistry, University of Southampton, Bassett Crescent East, Southampton SO16 7PX, United Kingdom, and the (4)Chemical and Biological Defence Establishment, Porton Down, Salisbury, SP4 0JQ, Wilts, United Kingdom

ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
REFERENCES

ABSTRACT

Two proline mimetics, the enantiomers of 2-azabicyclo[2,2,1]heptane-3-carboxylic acid, have been incorporated in place of Pro into synthetic peptides based on the B-loop beta-sheet sequence of human transforming growth factor-alpha (TGF-alpha) (residues Cys-Cys). The peptides were further modified by inclusion of an N-terminal phenylalanine and constrained by formation of an intramolecular disulfide bond. While no mitogenic response was observed in the parental NR6 cell line, the peptides stimulated DNA synthesis in NR6/HER cells (NR6 fibroblasts transfected with the human epidermal growth factor receptor). Induction of DNA synthesis was dose dependent, with EC values in the range 130-330 µM; in the presence of low doses of TGF-alpha, the mitogenic effect of the peptides was additive, up to the plateau response achieved by maximal doses of TGF-alpha alone. These effects are consistent with the peptides acting via the same mechanism as TGF-alpha. Analysis of the structure of the peptides by NMR indicated that the presence of the mimetics significantly increased the propensity of the peptidyl-proline bond to adopt the cis conformation. These data confirm the role of the beta-sheet in receptor activation, and emphasize the importance of presentation of peptides in an appropriate conformation for recognition.


INTRODUCTION

Epidermal growth factor (EGF) (^1)and transforming growth factor-alpha (TGF-alpha) belong to a family of EGF-like growth factors (1) that stimulate a variety of epithelial and mesenchymal cells. The biological effects of these growth factors are mediated via the transmembrane epidermal growth factor receptor (EGF-R) (2) , a type 1 receptor tyrosine kinase(3) . The EGF-R and its ligands are of considerable interest not only in normal physiological processes such as wound healing (4) and embryogenesis (5) but also through their involvement in the pathology of hyperproliferative (6) and neoplastic (7) diseases. Thus, the identification of small bioactive molecules may have several clinical applications.

NMR studies have identified the major structural element in EGF and TGF-alpha as a double stranded anti-parallel beta-sheet (8) which includes the 10 residues between the third and fourth cysteines of the growth factors. Mutational analysis of Ile(9) and Leu(10) in EGF has implicated the beta-sheet in the ligand:receptor interaction. In TGF-alpha, we have recently identified this same region as one which interacts with the chicken EGF-R(11) . These observations confirm our previous studies using an epitope mapping technique which identified a putative receptor binding cavity in TGF-alpha(12) . The cavity was formed from the B-loop beta-sheet, as well as the C-loop and flexible C-terminal tail of TGF-alpha. The side chain of Phe, a known receptor contact residue, was not identified by the mapping technique, but was found to occupy a central position within this cavity.

Previous studies have shown that synthetic peptide fragments of EGF (13, 14, 15, 16) and TGF-alpha (17, 18, 19) bind only weakly to EGF-R, nevertheless, only peptides corresponding to the B-loop segment of EGF have been consistently shown to bind to the EGF-R and invoke a weak mitogenic response. While low activity of synthetic peptide fragments may reflect the complex interaction of the ligand with EGF-R, it may also be due to failure of these peptides to adopt a conformation similar to that of the native ligand. Hence, some workers have used peptidomimetics (20) or cyclization (21) to apply additional conformational constraints.

In the present study, we have generated constrained peptides based on the beta-sheet segment of TGF-alpha and have exploited the presence of proline in this peptide. This amino acid has a pyrrolidine structure and an N-alkylated amide bond which gives rise to cis and trans rotamers of comparable energy(22) . In view of these structural implications, it represented an attractive site for modification and development of TGF-alpha analogue peptides.


EXPERIMENTAL PROCEDURES

Materials

Recombinant human EGF was purchased from Life Technologies, Inc., and recombinant human TGF-alpha was purchased from British Biotechnology, UK. NR6 and NR6/HER (NR6 fibroblasts transfected with the human EGF-R) cells were a gift from Dr. G. Panayatou, Ludwig Institute for Cancer Research, London, W1P 8BT. HN5 squamous carcinoma cells (23) were a gift from Professor B. Gusterson, Institute of Cancer Research, Sutton, UK.

Synthesis and Purification of TGF-alpha Peptides

The synthesis of the 2-azabicyclo[2,2,1]heptane-3-carboxylic acid enantiomers (L- and D-ABHC) and their incorporation into the TGF-alpha-related peptides are detailed elsewhere(24) . Briefly, the peptides were synthesized by standard Fmoc chemistry with a trityl- or acetamidomethyl (ACM) side chain protecting group on cysteine. Disulfide bond formation was achieved by air oxidation in ammonium bicarbonate buffer at 38 °C and the cyclic peptides purified by reversed phase HPLC.

Two-dimensional NMR

Total correlated spectroscopy (TOCSY) (25) and rotating frame nuclear Overhauser spectroscopy (ROESY) (26) were performed at 293 K in a 90% H(2)O/D(2)O mixture on a Varian VXR500 or a VXR600 instrument. The concentration of each peptide was 10 mg/ml, and the pH of each sample was adjusted to 2.8. Two-dimensional TOCSY ( = 80 ms) and ROESY ( = 150 or 250 ms) spectra were acquired using standard pulse sequences. Quadrature detection in the t(1) dimension was achieved using the TPPI method(27) , and in all experiments 512 t(1) increments were recorded. The NMR spectra were processed using the Varian NMR software with appropriate apodization, base-line correction and zero filling to yield real 1024 512 matrices.

Cell Culture

Cells (NR6, NR6/HER, and HN5) were routinely cultured in Dulbecco's modified Eagle's medium containing 10% fetal bovine serum, 2 mM glutamine, nonessential amino acids, 10 units/ml penicillin, and 10 µg/ml streptomycin at 37 °C in a humidified atmosphere of air containing 5% CO(2). G418 (100 µg/ml) was also included in the NR6/HER growth medium as a selection for EGF-R-encoding transformants.

Measurement of Mitogenic Activity

The ability of the TGF-alpha peptides to induce DNA synthesis in confluent and quiescent fibroblasts was assayed as described previously (28) except that NR6 or NR6/HER fibroblasts were used instead of human foreskin fibroblasts.

EGF Receptor Tyrosine Phosphorylation

EGF-R tyrosine phosphorylation assays were performed as described previously (29) except using HN5 cells at approximately 50% confluence instead of A431 cells; growth factors or peptides diluted in Dulbecco's modified Eagle's medium were added in a 50-µl volume, and cells were incubated for 10 min at room temperature.


RESULTS

Initial studies focused on TGF-alpha residues Cys-Cys which were constrained by introduction of an intramolecular disulfide bond. Although these two cysteines are not disulfide-bonded to each other in the intact growth factor (Fig. 1a), molecular modeling using NMR-derived conformations of TGF-alpha revealed that they were sufficiently close (5 Å) to form an undistorted disulfide bond without significant changes in the conformation of the beta-sheet. The peptide was further modified by introduction of an N-terminal phenylalanine to mimic the presence of Phe, a known receptor contact residue whose side chain lies close to Cys and Cys (Fig. 1, b and c). This cyclic peptide was designated N-pheTGF-alpha[21-32].


Figure 1: Structure of TGF-alpha and derivation of TGF-alpha analogue peptides. a, the primary structure of TGF-alpha showing the three-looped motif with the residues incorporated into N-pheTGF-alpha[21-32] highlighted; b, the primary structure of N-pheTGF-alpha[21-32] highlighting Pro; c, the three-dimensional structure of TGF-alpha visualized using RasMol v2.4 and NMR coordinates obtained from Dr. T. P. Kline (39) ; the TGF-alpha structure is displayed as a ribbon with the region between residues 21 and 32 in boldface; the locations of the side chains of the six cysteines and Phe are identified in stick representation, and the spheres identify the sulfurs of Cys and Cys.



N-pheTGF-alpha[21-32] and three analogue peptides in which L-proline was replaced by D-proline or by the two enantiomers of 2-azabicyclo[2,2,1]heptane-3-carboxylic acid (N-pheTGF-alpha[21-32], N-pheTGF-alpha[21-32], and N-pheTGF-alpha[21-32], respectively) were synthesized as described elsewhere (25) and were purified by HPLC, both before and after cyclization. The authenticity of the peptides was established by a variety of criteria: all were homogeneous by HPLC (Fig. 2), mass spectroscopic results established the required molecular masses, amino acid analysis demonstrated the presence of all residues other than the unnatural amino acids and cysteine, and the amino acid sequence was confirmed by two-dimensional NMR.


Figure 2: Analytical HPLC profiles of cyclic N-pheTGF-alpha[21-32] peptides. Each peptide was analyzed on a Dynamax C(18) analytical column using a gradient of acetonitrile, 0.1% trifluoracetic acid in 0.1% trifluoroacetic acid in H(2)O as shown. The profiles show: N-pheTGF-alpha[21-32] (a), N-pheTGF-alpha[21-32] (b), N-pheTGF-alpha[21-32] (c), and N-pheTGF-alpha[21-32] (d).



NMR spectra of the free SH and ACM-blocked linear peptides were virtually identical, and their sequential assignment was straightforward using the TOCSY and ROESY data acquired. Resonance heterogeneity was apparent for several protons, being greatest for those closest to the prolyl amide bond (Fig. 3a). This was consistent with cis-trans isomerization, which was estimated for each compound and shown to be greatest for linear N-pheTGF-alpha[21-32] (Table 1).


Figure 3: TOCSY spectra showing the NH region of (a) linear ACM-blocked and (b) cyclic N-pheTGF-alpha[21-32] recorded in 90% H(2)O/D(2)O. In (a), spin systems have been identified according to residue using the single-letter code; prime (`) characters denote a secondary conformation arising from the presence of proline cis and trans isomers, while additional peaks arising from racemization of Cys are identified as X. The partial assignment in (b) highlights similarities with (a).





In contrast to the simple appearance of the linear peptides, the spectra of the cyclic peptides were substantially more complex (Fig. 3b). For each peptide, up to four resonances per proton were detectable. From these resonances, spin systems similar to the major (trans-prolyl) conformation in the spectra of the linear peptides could be conveniently located with little change in their relative proton chemical shifts. Similarly, resonances corresponding to the cis-prolyl conformation were also evident but the disulfide constraint induced greater resonance heterogeneity and discrete resonances were apparent for most backbone protons. The remaining peaks were suggestive of a separate family of conformations, with cis- and trans-pro subfamilies. Assignment of spin-systems for each of the conformations was hampered by the degree of degeneracy between chemical shifts, making unambiguous assignment of particular rOes difficult. Furthermore, the rOe intensity was poor due to the large number of different chemical shifts displayed by each proton, consequently very few long range (nonsequential) rOes were observed. Although a tentative sequential assignment of the major conformation of each peptide was possible, the number of rOe-derived constraints available was insufficient to restrict conformational space and so produce a reliable picture of the peptide conformation.

The extent of the resonance heterogeneity in spectra of the cyclic compounds was unexpected. We considered two possible explanations for this: slow conformational exchange, perhaps as a result of disulfide bond isomerization, or the presence of an impurity arising, for example, from racemization of a chiral center. Although our careful analytical procedures had indicated that the peptides were homogeneous, disulfide bond isomerization is unlikely to lead to separate resonances in view of previous reports which indicate that this is rapid in all but the most severely constrained peptides(30, 31) . This led us to consider the possibility of racemization. During Fmoc peptide synthesis, racemization of the C-terminal residue during coupling to certain resins is a minor problem(32) . However, it has also been observed that when this residue is cysteine, further racemization can occur during chain elongation(33) . Further inspection of the NMR spectra of the linear compounds revealed two or three weak cross-peaks (identified as X in Fig. 3a) which could not be readily explained by cis-trans isomerization at the prolyl residue. Comparison of their chemical shifts and rOes (where visible) identified them with the two C-terminal residues. For the cyclic compounds, we conclude that the second family of resonances apparent in the NMR spectra represent trans- and cis-conformers of the TGF-alpha peptide containing a C-terminal D-cysteine residue. These are more noticeable in the spectra of the cyclic compounds because the presence of a disulfide constraint leads to a greater perturbation in the local environment. Although separation of the D-cysteine containing peptides was not possible, we estimated that our syntheses all contained about 20% D-cysteine. Therefore, different ratios of D- and L-cysteine could not be the sole explanation for any differences in biological activity between compounds.

The peptides were tested for their ability to induce DNA synthesis in murine fibroblasts stably transfected with the human EGF-R (NR6/HER cells). None of the linear precursor peptides exhibited any biological activity. In contrast, when constrained by introduction of an intramolecular disulfide bond, the two peptides containing the proline analogues, N-pheTGF-alpha[21-32] and N-pheTGF-alpha[21-32] stimulated DNA synthesis with EC values of 130 and 330 µM, respectively (Fig. 4a); the equivalent L-Pro- or D-Pro-containing cyclic peptides were inactive. When the N-pheTGF-alpha[21- 32] and N-pheTGF-alpha[21-32] peptides were assayed alone, incorporation of label into DNA approached that obtained with a maximal dose of TGF-alpha. In presence of TGF-alpha, N-pheTGF-alpha[21-32] produced an additive response (data not shown), but this did not exceed the maximal level of stimulation achieved by TGF-alpha alone (Fig. 4b, left side).


Figure 4: Mitogenic activity of cyclic N-pheTGF-alpha[21-32] peptides. a, the activity of N-pheTGF-alpha[21-32] (bullet), N-pheTGF-alpha[21- 32] (up triangle, filled), N-pheTGF-alpha[21-32](down triangle filled), and N-pheTGF-alpha[21- 32] (black square), was measured by incorporation of the thymidine analogue, I-UdR, into DNA in NR6/HER cells during S-phase as described under ``Experimental Procedures.'' In this experiment, maximal incorporation of label in the presence of TGF-alpha was 7.5 10^4 cpm. Similar results were obtained in three separate assays. b, comparison of the mitogenic activity of N-pheTGF-alpha[21-32] (0.5 mg/ml), TGF-alpha (6 ng/ml, a maximally stimulating dose) and PDGF (2.5 IU/ml) on NR6/HER cells (hatched bars) or NR6 cells (cross-hatched bars). Basal incorporation of label was 600 and 2040 cpm in the NR6/HER and NR6 cells, respectively. Results are mean of triplicate determinations.



Even though N-pheTGF-alpha[21-32] elicited a mitogenic response, no detectable increase in EGF-R phosphorylation was observed when the peptide was tested on the EGF-R overexpressing squamous carcinoma cell line, HN5 (data not shown). Therefore, to confirm that the peptide was acting via the EGF-R it was tested on the parental NR6 cell line which lacks EGF-R. Fig. 4b shows that whereas both N-pheTGF-alpha[21-32] and TGF-alpha were mitogenic for NR6/HER cells, neither stimulated DNA synthesis in NR6 cells, even though these cells were responsive to PDGF.


DISCUSSION

In recent years, generation of synthetic peptides with improved properties for probing ligand:receptor interactions has been greatly facilitated by use of modifications such as introduction of unnatural amino acids and other conformational constraints to mimic receptor bound ``bioactive'' conformations. By exploiting our knowledge of the three-dimensional structure of TGF-alpha and by use of unnatural amino acids, we report for the first time the ability of an analogue peptide based on the B-loop beta-sheet segment of TGF-alpha to exhibit EGF-R activity. In relative terms, the peptide still exhibits low activity by comparison with TGF-alpha (10^6 times less active). However, given that residues from the C-domain (Arg and Leu in TGF-alpha) contribute about half of the binding free energy of the growth factor with EGF-R(34, 35, 36, 37) , we might reasonably expect that a B-loop peptide would have an affinity 10^5 times less than TGF-alpha (10M) and a correspondingly low mitogenic activity.

The specificity of the peptides for the EGF-R was evident from their ability to stimulate NR6/HER but not NR6 cells. Furthermore, in the presence of varying doses of TGF-alpha, induction of mitogenesis by the peptides never exceeded the plateau level of stimulation caused by maximal doses of TGF-alpha alone. Failure to observe EGF-R autophosphorylation in response to the peptides may reflect the fact that there is not an absolute requirement for receptor phosphorylation to initiate mitogenic signaling(38) . Indeed, EGF mutants with modified C-terminal tails also have impaired ability to activate EGF-R autophosphorylation, even though they are still mitogenically active (35) . For the TGF-alpha B-loop analogue peptides, which completely lack this region of the growth factor, it is perhaps not surprising that their ability to activate the kinase is low.

We believe previous studies failed to generate bioactive peptides because they used the entire TGF-alpha B-loop sequence constrained only by a disulfide bond in the native pairing (i.e. between cysteines two and four). To yield mitogenic compounds, we found it necessary both to reduce the size of the peptide and to introduce some additional conformational constraints. Our choice of sequence, with a non-native disulfide bond between cysteines three and four, was based on the observation that the N-domain is more properly described as being formed by three segments (A, J (joining), and B) rather than by the conventional two loop designation (i.e. A-loop and B-loop, see Fig. 1). The A-segment is comprised of the part of the A-loop between the first and second cysteines, the J-segment is common to the A- and B-loops and lies between the second and third cysteines, while the B-segment forms the beta-sheet in the B-loop between the third and fourth cysteines (Fig. 5a). This definition emphasizes the importance of the disulfide bonds which act as nodes from which the three segments are presented (Fig. 5b). These nodes lie sufficiently close together so that any one of the three segments can be independently modelled by linking its ends to create a cycle. In the case of the TGF-alpha peptides, we studied the B-segment which was closed by a non-native disulfide bond.


Figure 5: Diagrammatic representations of the N-terminal domain of TGF-alpha. In a, the chain path and the residue numbers of the cysteines in the disulfide cross-links are identified; b shows the topological equivalent of a, illustrating the arrangement of the A-, J- and B-segments and the location of the nodes.



Our data indicate that both cyclization and substitution with prolyl mimetics were important for activity. It seems likely that the beneficial effect of the cyclic constraint arises from stabilization of peptide conformations more suitable for binding to the EGF-R. In native TGF-alpha, residues 21-32 form a beta-sheet (8, 39) and this has been implicated in receptor binding(11, 12) . However, in our TGF-alpha peptides, the disulfide constraint appeared unable to maintain an anti-parallel alignment of the peptide main chain as no nonsequential rOes characteristic of this structural element were evident in their NMR spectra. Nevertheless, a restrictive effect of the disulfide was apparent, where it induced additional resonance heterogeneity in the cyclic compared to the linear compounds.

The contribution of the bicyclic proline analogues to peptide activity may also be related to their effect on peptide conformation, mostly likely prolyl amide cis-trans isomerization. Differences in the degree of isomerization were evident in the linear compounds (Table 1) and the highest proportion of the cis isomer was observed in the precursor of the most active cyclic compound. Although NMR spectra of the cyclic compounds showed clear evidence for the cis prolyl isomer, quantitation of the ratio of trans:cis was precluded by the complexity of these spectra.

One problem which became evident from the NMR studies was the apparent racemization of the C-terminal cysteine. Although not frequently reported, this problem may be quite common in peptides with C-terminal cysteine, being particularly difficult to detect using conventional analytical quality control; mass spectroscopy cannot identify this impurity, and it represents the most stringent test for HPLC since it leads to inversion of the hydrogen and the carboxyl group at the C terminus where it has minimal effects on conformation. For our peptides, the degree of racemization was similar, as would be expected since they were synthesized under identical conditions and differed only in the presence of the individual proline analogues. Thus, it is unlikely that racemization per se could account for the differing activities of the peptides. It remains to be determined whether biological activity resides with one or both isoforms.

In conclusion, we have shown that appropriately constrained B-segment fragments of TGF-alpha are mitogenically active on cells expressing EGF-R. The relative activity of the peptides correlated with the proportion of the cis-proline isomer in their linear precursors and this may have contributed to their biological potency after cyclization. Our observation that the ABHC proline mimetics can be readily incorporated into peptides and used to enhance the population of cis-propeptidyl bonds may have wider synthetic applications in the development of other bioactive peptides.


FOOTNOTES

*
This work was supported in part by the Cancer Research Campaign, United Kingdom, and the Ministry of Defence, United Kingdom, and by the award of a Research Assistantship (to K. J. S.) from the Ministry of Defence. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore by hereby marked ``advertisement'' in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

§
Present address: Dept. of Chemistry, Leigh Hall, University of Florida, Gainesville, FL 32607.

Deceased.

**
To whom correspondence should be addressed. Tel.: 01703-796184; Fax: 01703-783839.

(^1)
The abbreviations used are: EGF, epidermal growth factor; EGF-R, epidermal growth factor receptor; TGF-alpha, transforming growth factor alpha; ABHC, 2-azabicyclo[2,2,1]heptane-3-carboxylic acid; TOCSY, total correlated spectroscopy; ROESY, rotating frame nuclear Overhauser spectroscopy; PDGF, platelet-derived growth factor; ACM, acetamidomethyl; HPLC, high performance liquid chromatography; Fmoc, N-(9-fluorenyl)methoxycarbonyl; rOe, rotating frame nuclear Overhauser enhancement.


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