©1995 by The American Society for Biochemistry and Molecular Biology, Inc.
Selective Inhibition of Ras-dependent Cell Growth by Farnesylthiosalisylic Acid (*)

(Received for publication, January 3, 1995; and in revised form, June 5, 1995)

M. Marom (1) R. Haklai (1) G. Ben-Baruch (2) D. Marciano (3) Y. Egozi (1) Y. Kloog (1)(§)

From the  (1)Department of Biochemistry, The George S. Wise Faculty of Life Sciences, the (2)Department of Obstetrics & Gynecology, Sheba Medical Center, Tel Hashomer and the Sackler School of Medicine, Tel Aviv University, Tel Aviv 699787, and the (3)Israel Institute for Biological Research, POB 19, Ness Ziona 70450, Israel

ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES

ABSTRACT

S-trans,trans-Farnesylthiosalicylic acid (FTS) is a novel farnesylated rigid carboxylic acid derivative. In cell-free systems, it acts as a potent competitive inhibitor (K = 2.6 µM) of the enzyme prenylated protein methyltransferase (PPMTase), which methylates the carboxyl-terminal S-prenylcysteine in a large number of prenylated proteins including Ras. In such systems, FTS inhibits Ras methylation but not Ras farnesylation. Inhibition of the PPMTase by FTS in homogenates or membranes of a variety of tissues and cell lines is inferred from a block in the methylation of exogenously added substrates such as N-acetyl-S-trans,trans-farnesyl-L-cysteine and of endogenous substrates including small GTP-binding proteins. FTS can also inhibit methylation of these proteins in intact cells (e.g. in Rat-1 fibroblasts, Ras-transformed Rat-1, and B16 melanoma cells). Unlike in cell-free systems, however, relatively high concentrations of FTS (50-100 µM) are required for partial blocking (10-40%) of protein methylation in the intact cells. Thus, FTS is a weak inhibitor of methylation in intact cells. Because methylation is the last step in the processing of Ras and related proteins, FTS is not likely to affect steps that precede it, e.g. protein prenylation. This may explain why the growth and gross morphology of a variety of cultured cell types (including Chinese hamster ovary, NIH3T3, Rat1, B16 melanoma, and PC12) is not affected by up to 25 µM FTS and is consistent with the observed lack of FTS-induced cytotoxicity. Nevertheless, FTS reduces the levels of Ras in cell membranes and can inhibit Ras-dependent cell growth in vitro, independently of methylation. It inhibits the growth of human Ha-ras-transformed cells (EJ cells) and reverses their transformed morphology in a dose-dependent manner (0.1-10 µM). The drug does not interfere with the growth of cells transformed by v-Raf or T-antigen but inhibits the growth of ErbB2-transformed cells and blocks the mitogenic effects of epidermal and basic fibroblast growth factors, thus implying its selectivity toward Ras growth signaling, possibly via modulation of Ras-Raf communication. Taken together, the results raise the possibility that FTS may specifically interfere with the interaction of Ras with a farnesylcysteine recognition domain in the cell membrane. This drug, and perhaps other farnesylated rigid carboxylic acid analogs, may be used for in vitro characterization of the PPMTase and for the identification of a putative Ras farnesylcysteine recognition domain in cell membranes.


INTRODUCTION

The free carboxyl group of the terminal farnesylcysteine or geranylgeranylcysteine in a large number of prenylated proteins is methylated by the prenylated protein methyltransferase (PPMTase), (^1)a unique enzyme among methyltransferases(1) . This enzyme associates tightly with the particulate fractions in eukaryotic cells (2, 3, 4, 5) and has an absolute requirement that its substrates contain the free carboxyl group and S-farnesyl or S-geranylgeranyl moieties(4, 5, 6) . The sequence of the yeast PPMTase gene (STE14) indeed predicts a hydrophobic membrane-associated protein(7, 8) . Many of its natural substrates are key regulatory elements in receptor signal transduction pathways(9, 10, 11, 12, 13, 14, 15) , for example Ras and the heterotrimeric G-proteins. Methylation of these proteins would increase the hydrophobicity of their carboxyl terminus, already rendered hydrophobic by prenylation(16, 17, 18, 19) . Because methylation is the last and only possible reversible step in the processing of such prenylated proteins, it is likely that the PPMTase modulates their interactions with membranes and other proteins. It is also reasonable to assume that the methyl-acceptor recognition site in the PPMTase shares some similarities with prenylcysteine recognition domains found in target sites for prenylated proteins. Such sites are not necessarily located within the lipid bilayer(20) .

The view that protein prenylation would mediate protein-protein interaction(20) , as well as the possibility of separate targets for the methylated and unmethylated forms of prenylated proteins, has recently been discussed(5) . Very little is known about the nature of prenylcysteine recognition domains. They are likely to exist, however, in at least three other proteins besides the PPMTase: the GDP-dissociation inhibitory protein, which binds only to the fully processed rab3A(21) , and the yeast a-factor transporter (8) and receptor(8, 22) , which require the fully processed a-factor. Also, the existence of farnesylcysteine recognition domains for Ras proteins may be predicted from the absolute requirement of the farnesylcysteine for Ras oncoprotein membrane anchorage and transforming activity(10, 19, 23) .

An approach that has provided valuable information on the prenylcysteine recognition domain of the PPMTase is the use of synthetic farnesyl derivatives. To be recognized by this domain, a PPMTase substrate need not be a peptide; N-acetyl-S-trans,trans-farnesyl-L-cysteine (AFC) is an excellent substrate for the enzyme(5, 6) . Other N-acetylated farnesylcysteine analogs can also act as substrates provided that they do not have bulky moieties(24) . Whereas such moieties can prevent association of farnesyl derivatives with the methyl-acceptor recognition domain(24) , the total absence of an amino group is tolerated, as shown by the fact that S-farnesylthiopropionic acid does serve as a PPMTase substrate(6, 24, 25) . Moreover, S-farnesylthioacetic acid is recognized by the PPMTase, though it does not serve as substrate but rather as a competitive inhibitor with respect to AFC(6, 25) .

On the basis of such observations, we have now prepared a novel rigid S-farnesyl carboxylic acid derivative, which, like S-farnesylthioacetic acid, is not an amino acid. We show here that it acts as a pure competitive inhibitor of the PPMTase in cell-free systems. Most interestingly, the results presented here together with those presented in a related study (26) suggest that rigid farnesylated carboxylic acid derivatives can inhibit Ras-dependent cell growth in a mechanism unrelated to their ability to inhibit the PPMTase.


EXPERIMENTAL PROCEDURES

Materials

AFC and FTS were prepared by a general procedure (6) and purified and analyzed as described in detail elsewhere(26) . Purity of compounds, as assessed by TLC, ^1H NMR, and mass spectra analysis was >95%. S-[methyl-^3H]Adenosyl-L-methionine ([methyl-^3H]AdoMet, 85 Ci/mmol) was from ARC, and [methyl-^3H]methionine (85 Ci/mmol) and [^3H]thymidine (6.7 Ci/mmol) were from DuPont NEN. Other chemicals were from Sigma and Merck. Gel electrophoresis supplies were from Pharmacia Biotech Inc. Tissue culture supplies were from Beit-Haemek (Israel).

PPMTase Assays

Synaptosomal membranes of rat brain cerebellum (25) or total membranes (2, 25) of cultured cell lines (100,000 times g pellet) were used for methyltransferase assays in the cell-free systems. Methyltransferase assays were performed at 37 °C in 50 mM Tris-HCl buffer, pH 7.4, using 100 µg of protein, 25 µM [methyl-^3H]AdoMet (300,000 cpm/nmol), and 50 µM AFC (prepared as a stock solution in Me(2)SO) in a total volume of 50 µl. Me(2)SO concentration in all assays was 8%. Various AFC concentrations were used in several experiments as indicated in the text. Reactions were terminated after 10 min by addition of 500 µl of chloroform:methanol (1:1) with subsequent addition of 250 µl of H(2)O, mixing, and phase separation. A 125-µl portion of the chloroform phase was dried at 40 °C, and 200 µl of 1 N NaOH, 1% SDS solution was added. The methanol thus formed was counted by the vapor phase equilibrium method, as previously described (2, 25, 26) . Typical background counts (no AFC added) were 50-100 cpm, while typical reactions with AFC yielded 500-6,000 cpm. Assays were performed in triplicate, and background counts were subtracted. Methylation of endogenous substrates and gel electrophoresis were performed as previously described(2, 27) . Protein carboxyl methylation in intact cells was determined as described(27) , using 100 µCi/ml [methyl-^3H]methionine. Cells were assayed in near confluent cultures grown in 10-cm plates with 5 ml of labeling medium, as described(27) .

Methylation of Ras in EJ Cells and in a Cell-free System

Human Ha-ras-transformed Rat1 (EJ) cells (28) were plated at a density of 1 times 10^6 cells/10-cm plate and grown for 2 days in 10 ml of Dulbecco's modified Eagle's medium, 10% fetal calf serum and then incubated for 2 h with FTS freshly prepared from a stock Me(2)SO solution or with the solvent (0.1% Me(2)SO) only. Alternatively, the cells were grown for 3 days in the absence or in the presence of FTS. The media were then replaced by 5 ml of methionine-free Dulbecco's modified Eagle's medium, 2% fetal calf serum containing 0.1% Me(2)SO, 300 µCi/ml [methyl-^3H]methionine with or without 100 µM FTS. After 2 h, the cells were washed three times with 10 ml of phosphate-buffered saline and lysed in 400 µl of RIPA lysis buffer (9, 29) containing 1 mM EGTA, 1 mM EDTA, 0.1 mM leupeptin, 5 µg/ml pepstatin, 1 µg/ml soybean trypsin inhibitor, 0.1 mM phenylmethylsulfonyl fluoride, and 5 units/ml aprotonin. The lysates were passed eight times through a 25-gauge syringe, and insoluble material was removed by a 2-min microfuge spin. Two equal portions (each containing 400 µg of protein) of control lysates and of FTS-treated cell lysates were incubated with 1 µg of Y13-259 antibody for 16 h at 4 °C. To each sample, 100 µl of protein A-Sepharose beads coated with rat-IgG were then added(29) , and the samples were incubated for 1 h at 4 °C. The beads were precipitated by a 30-min microfuge spin, washed four times with RIPA, and resuspended in 75 µl of SDS sample buffer, which was collected following incubation for 30 min at room temperature. These samples were then used for SDS-PAGE and determination of protein ^3H-labeled methyl esters in Ras by the base hydrolysis vapor phase diffusion assay(2, 26, 27) . The data were presented in terms of ^3H-labeled methyl groups (dpm) determined in gel slices of 20-30-kDa gel migration zones.

A reconstituted system for cell-free Ras processing was obtained by a two-step procedure. In the first step(30) , bacterially expressed human Ha-Ras (2.5 µg) and partially purified rat brain farnesyltransferase (2 µg) were incubated (total volume 10 µl) for 1 h at 37 °C with 15 pmol [^3H]farnesylpyrophosphate (15 Ci/mmol, ARC), 50 mM Tris-HCl, pH 7.4, 50 µM ZnCl(2), 5 mM MgCl(2), 20 mM KCl, 1 mM dithiothreitol, 4% Me(2)SO (control), or 50 µM FTS in 4% Me(2)SO. Proteins were separated by SDS-PAGE, and ^3H-farnesylated Ras was determined by direct counting of 2-mm gel sections in a Lipoluma/Lumasolve scintillation mixture. Neither Ras alone nor farnesyltransferase alone yielded a signal above background. In the second step, samples incubated as described above each received 5 µl of rat brain microsomal membranes (5 µg of protein), which served as a source of protease and methyltransferase, and 10 µl (110 pmol) of S-[methyl-^3H]adenosyl-L-methionine (85 Ci/mmol). Me(2)SO and FTS concentrations in the test samples were adjusted to 4% and 50 µM, respectively, and the samples were then incubated for 30 min at 37 °C. Proteins were separated by SDS-PAGE, and ^3H-labeled methylesters were determined by the base hydrolysis vapor phase diffusion assay(2, 26, 27) . Assay background counts (no Ras added) were 10% of signals. Control experiments showed that by itself the ^3H-farnesylated Ras, which was formed in the first step, did not yield base-labile diffusible counts. This enabled us to perform the double tritium labeling procedure described above.

Cell Culture Procedures

Appropriate specified conditions were used for culturing of the various cell types employed: Chinese hamster embryonic (CHE) fibroblasts and T-antigen transformed CHE(31) , Chinese hamster ovary fibroblasts and B16 melanoma(31) , pheochromocytoma PC12(27) , NIH3T3 and v-Raf-transformed NIH3T3(32) , Erb-B2-transformed NIH3T3(33) , Rat1 and human Ha-Ras-transformed Rat1 (EJ)(28) , human endometrial carcinoma HEC1A (34) , bovine capillary endothelial cells(35) , mouse cerebellar granular cells(36) , and rat brain astrocytes(37) . All cultured cells were grown at 37 °C humidified 95%, 5% air/CO(2) in media containing 10% serum. Except for the biochemical experiments, which were carried out as described above, cells were grown in 24-well plates. Plating density was as follows (cells/well): PC12, 1 times 10^4; CHE, T-antigen-transformed CHE, endothelial cells, astrocytes, and B16, 3 times 10^3; Rat1, EJ, NIH3T3, and v-Raf-transformed NIH3T3, 2 times 10^3. 2 h after plating, the cells received either solvent or FTS freshly prepared from a stock solution to yield the final indicated concentrations in 0.1% Me(2)SO. Media were replaced every 4 days with fresh medium containing the solvent or the drug. Separate experiments indicated that the solvent itself had no effect on cell growth. On the indicated days, the cells were detached from plates by trypsin/EDTA and counted under the light microscope. All assays were performed in quadruplicate. In parallel experiments, cells were stained either with trypan blue or with 3-(4,5-dimethylthiosol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) (38) , and the stained cells were examined under the light microscope. In some MTT-stained cultures, the cells were dissolved in 0.2 ml of 100% Me(2)SO, and the extent of staining was determined spectrophotometrically (A, A) using an enzyme-linked immunosorbent assay reader.

Immunoprecipitation and Immunoblotting

EJ cells were plated at a density of 2 times 10^6 cells/75-cm^2 flask, grown for 2 days as detailed above, and then incubated for 12 h with 25 µM FTS or with 0.1% Me(2)SO (control). The cells were then detached from the flasks and washed in phosphate-buffered saline. All of the subsequent procedures were carried out at 4 °C. The cell pellets were homogenized in 2 ml of 20 mM Tris-HCl, pH 7.4, containing 5 µg/ml leupeptin, 5 µg/ml pepstatin, 1 mM EDTA, 1 mM benzamidin, 1 mM phenylmethylsulfonyl fluoride, and 5 units/ml aprotonin. Total cell membranes (P) and cytosol (S) were obtained by a 100,000 times g centrifugation step (1 h). Following resuspension of the P in 2 ml of homogenization buffer, both S and P received 220 µl of 10times immunoprecipitation buffer (100 mM Tris-HCl, pH 7.5, 1.5 M NaCl, 10% Triton X-100, 5% deoxycholate, 1% SDS). Following 10 min on ice, the insoluble material was removed by a 10-min 10,000 times g spin, and the clear supernatant was saved at -70 °C. Samples containing 150 µg of protein of P and the equivalent amount of S protein were precleared by a 1-h incubation with 1 µg of naive rat IgG and protein G-agarose in a total volume of 500 µl of immunoprecipitation buffer containing the antiproteases mentioned above. The precleared samples were incubated for 12 h with 2 µg of Y13-259 antibodies coupled to agarose beads (Oncogene Science Ab-1A). The beads were then precipitated and washed four times with 1 ml of immunoprecipitation buffer, twice with 1 ml of 20 mM Tris-HCl, pH 7.4, and then resuspended in 20 µl of SDS sample buffer. Proteins were then separated on 15% SDS-polyacrylamide mini gels and blotted onto a nitrocellulose paper. The paper was blocked with 10% skim milk in Tris-buffered saline and then incubated for 2 h with 1:250 dilution of a rabbit anti-Ras serum in Tris-buffered saline containing 10 mg/ml bovine serum albumin and 0.05% Tween 20 (Ras antiserum was prepared by immunizing rabbits with recombinant human Ha-Ras). Immunoblots were then incubated for 1 h with 1:5000 dilution of goat anti rabbit IgG-horseradish peroxidase conjugate (Sigma) and exposed to ECL. Results similar to those described here were also obtained when blots were incubated with Y13-259 antibodies and then with rabbit anti-rat IgG-horseradish peroxidase conjugate (Sigma).


RESULTS

In an attempt to determine whether FTS (Fig. 1a, inset) can interact with PPMTase, we used a rat cerebellum-derived preparation of synaptosomal membranes, which are highly enriched in the enzyme(25) . With AFC as a substrate, V(max) in this preparation is 60 pmol/min/mg protein. Thus, together with a sensitive methylation assay (25, 26) , it should be possible to detect substrate or inhibitor activity. Incubation of synaptosomal membranes with 25 µM [methyl-^3H]AdoMet and 200 µM FTS under conditions that promote efficient methylation of either AFC or S-farnesylthiopropionic acid (25, 26) yielded no methylated products in the standard methylation assay. If FTS were a substrate, the formation of ^3H-methylated FTS should have been detected in this assay, in which total lipophilic compounds are extracted by chloroform/methanol. We conclude that FTS is not a substrate for rat cerebellum PPMTase. In contrast, FTS inhibited the methylation of AFC in a dose-dependent (Fig. 1a) and competitive manner (Fig. 1b). The estimated K(i) value for FTS in this preparation is 2.6 ± 1.5 µM (n = 4), comparable to the values recorded for S-farnesylthioacetic acid in the same preparation (25) or in rod outer segments(6) . As shown in Fig. 1c, in the synaptosomal membrane preparation FTS could also inhibit methylation of endogenous 21-26-kDa proteins, which represent mostly GTP-binding proteins(26) . Thus, in this cell-free system, FTS can compete with natural substrates for the prenylcysteine recognition domain in the PPMTase. To examine whether FTS can also inhibit the PPMTase in other cell-free systems, we repeated the experiments with homogenates of a variety of tissues and cell types. These include mouse brain, kidney, pancreas, heart and testis, human endometrium and endometrial carcinomas, Rat1 and NIH3T3 fibroblasts, pheochromocytoma PC12 cells, B16 melanoma cells, human Ha-Ras-transformed rat1 (EJ) cells, and human endometrial carcinoma HEC1A cells. In all cases, FTS caused a dose-dependent inhibition of AFC methylation. Typical results obtained with homogenates of EJ cells are shown in Fig. 1a. We conclude that FTS is likely to inhibit PPMTase in any cell-free system, even though its inhibitory potency may vary among cell types and tissues (see Fig. 1a). Such variations were also observed with the PPMTase inhibitor S-farnesylthioacetic acid(24) .


Figure 1: Inhibition of PPMTase by FTS. The chemical structure of FTS is shown in the boxedinset. a, dose-dependent inhibition of PPMTase in rat brain synaptosomes (bullet) and in homogenates of EJ cells () by FTS. Enzyme assays were performed in the presence of 25 µM [methyl-^3H]AdoMet, 50 µM AFC as a methyl acceptor, and the indicated concentrations of FTS. b, competitive inhibition of AFC methylation by FTS. Enzyme assays were performed in the absence (bullet) and in the presence (circle) of 10 µM FTS and various concentrations of AFC. Data are presented in the form of double-reciprocal plots. c, FTS inhibits methylation of 21-26-kDa GTP-binding proteins in rat cerebellum synaptosomes. Synaptosomal membranes were incubated for 60 min with 2.4 µM [methyl-^3H]AdoMet (15 Ci/mmol) in the absence (bullet) and in the presence (circle) of 100 µM FTS. Proteins were then separated by SDS-PAGE, and carboxyl methylesters were determined in gel slices(25, 26) .



Further studies were performed with intact cells. We first examined whether FTS can inhibit protein carboxyl methylation in the cells. Cells were metabolically labeled with [methyl-^3H]methionine in the absence and in the presence of 100 µM FTS. ^3H-Labeled methylesters were then determined (2, 26) in the group of 21-26-kDa proteins following their separation by SDS-PAGE. Typical results obtained with EJ, Rat1, and B16 cells (Fig. 2, a-c) indicated that FTS inhibits methylation of the 21-26-kDa proteins. The degree of inhibition was, however, relatively low (30-40%), and even lower (10-20%) when the cells were grown for 3 days in the presence of 50 µM FTS and then labeled with [methyl-^3H]methionine (not shown).


Figure 2: Inhibition of methylation in intact cells by FTS. Methylation was determined following metabolic labeling for 2 h with [methyl-^3H]methionine in the absence (bullet) and in the presence (circle) of 100 µM FTS (see ``Experimental Procedures''). Cell homogenates were separated by SDS-PAGE, and carboxylmethyl esters were determined in gel slices corresponding to gel migration of 20-30 kDa. a, Rat1 cells; b, EJ cells; and c, B16 cells.



The ability of FTS to inhibit carboxyl methylation of Ras in intact cells was examined in [methyl-^3H]methionine-labeled human Ha-ras-transformed Rat1 (EJ) cells. As shown in Fig. 3a, FTS (100 µM) inhibited Ras methylation by 40%. Labeling of EJ cells exposed to 50 µM FTS for 3 days gave similar results, except that Ras methylation was inhibited by only 20-30%. Thus, FTS appears to be a weak inhibitor of carboxyl methylation in intact cells. It therefore probably does not affect processing steps that precede methylation of prenylated proteins, such as farnesylation(16, 19, 20, 23) . Indeed, FTS (50 µM) did not inhibit farnesylation of Ha-Ras in a reconstituted cell-free processing system (Fig. 3b). It did, however, partially inhibit Ras methylation (Fig. 3c), a finding consistent with competitive inhibition of the methyltransferase in cell-free systems (Fig. 1).


Figure 3: Inhibition of Ras carboxyl methylation but not of Ras farnesylation by FTS. a, effect of 100 µM FTS on Ras methylation in intact human Ha-Ras-transformed Rat1 cells. Ras proteins were immunoprecipitated from the cell lysates by Y13-259 anti-Ras antibodies, following metabolic labeling with [methyl-^3H]methionine as detailed in Fig. 2(see ``Experimental Procedures''). The immunoprecipitated proteins were separated by SDS-PAGE, and carboxylmethyl esters were determined in gel slices corresponding to gel migration of 20-30 kDa. b, farnesylation of bacterially expressed human Ha-Ras in a cell-free Ras processing system. Partially purified farnesyltransferase (2 µg) and Ha-Ras (2.5 µg) were incubated with 15 pmol of [^3H]farnesylpyrophosphate for 1 h at 37 °C in the absence (bullet) and in the presence (circle) of 50 µM FTS (see ``Experimental Procedures''). Proteins were separated by SDS-PAGE, and gel slices were directly counted. c, inhibition of human Ha-Ras methylation in the cell-free Ras processing system. Rat brain microsomal membranes (5 µg of protein) and 110 pmol of [methyl-^3H]AdoMet were added to the reaction mixture that contained the farnesylated Ras. Following 30 min of incubation at 37 °C in the absence (bullet) or in the presence (circle) of 50 µM FTS, the proteins were separated by SDS-PAGE, and carboxylmethyl esters were determined in gel slices (see ``Experimental Procedures'').



In view of the fact that several prenylated proteins apparently play important roles in cell growth and in cytoskeleton-membrane interactions(16, 17, 18, 19, 20) , it was reasonable to examine whether FTS can affect the growth and/or morphology of cultured cells. Accordingly, a variety of cell types ( Table 1and Table 2) were grown under normal serum and medium conditions for 5 days in the presence of the solvent (0.1% Me(2)SO) or of 25 µM FTS in the solvent (see ``Experimental Procedures''). Cell morphology was examined under the light microscope, with cell counting and trypan blue exclusion staining to detect dead cells and MTT staining to detect live cells. A typical example of an experiment in which Rat1 cells were stained with MTT is shown in Fig. 4, a-c, and the estimated numbers of cells in the various cell types tested are summarized in Table 1and Table 2. The MTT data indicated that under the specified conditions, FTS was not toxic and did not affect the growth of Rat1 (Fig. 4, a-c) or of the other tested cell types, namely NIH3T3, CHE, Chinese hamster ovary, PC12, and B16 cells, bovine capillary endothelial cells, mouse cerebellum granular cells, and rat brain astrocytes. This was confirmed by direct cell counting ( Table 1and Table 2). No gross effects of FTS on cell morphology were detected in these cell types, and trypan blue staining indicated that cell death in the presence of 25 µM FTS (5-10%) was similar to that observed in controls.






Figure 4: FTS is not cytotoxic in Rat 1 or EJ cells. Rat1 (a-c) or EJ (d-f) cells were plated at a density of 2 times 10^3/well in the absence and in the presence of the indicated concentrations of FTS. The cells were either stained with MTT on the day of plating (day 0 in c and f) or grown for 1, 3, and 5 days and then stained with MTT. Typical photomicrographs of 5-day cultures of Rat1 (a, b) and of EJ (d, e) are shown (magnification 100times). Quadruplicate samples were used for the spectrophotometric determination (A, A) of MTT-stained cells, in control wells (openbars), and drug-treated wells (hatchedbars). Their mean values (±S.D.) as determined on days 0, 1, and 3 in cultures of Rat1 (c) and EJ (f) are presented.



We therefore conclude that FTS is not cytotoxic and would probably have no effect in vitro on the unstimulated growth and morphology of a variety of non-transformed cells or of some types of transformed cells such as the pheochromocytoma PC12 and melanoma B16 cells. In contrast, FTS had a profound effect on the growth of Rat1 cells transformed by the human Ha-ras oncogene (EJ). At concentrations lower than required for inhibition of Ras methylation, FTS caused a dose-dependent (0.1-10 µM) and time-dependent (3-10 days) inhibition of cell growth in EJ cells (Fig. 5a). Cultures grown for 5 days in the presence of 5 µM FTS had fewer and smaller foci than control cultures, and most cells had the flat morphology reminiscent of non-transformed Rat1 cells (Fig. 5b).


Figure 5: Inhibition of EJ cell growth by FTS. a. Ha-Ras-transformed Rat1 (EJ) cells (bullet) or untransformed Rat1 cells (circle) were plated at a density of 2 times 10^3 cells/well in 24-well plates and grown in the presence of the solvent (0.1% Me(2)SO) or the indicated FTS concentration. Quadruplicate cultures of solvent or drug-treated cells were maintained in culture for 3, 7, or 10 days and then collected from the plates and counted. Data are expressed as the ratio between the number of cells in the drug-treated cultures and the number in the solvent-treated cultures. The actual cell numbers (times10^4) on days 3, 7, and 10 were 1.7, 29, and 55 for the solvent-treated Rat1 cultures and 2.5, 42, and 140 for the solvent-treated Ras-transformed Rat1 cultures. Results shown are from one of five experiments with similar results. Within each experiment, the means varied by 15% or less. Variations between experiments yielded estimates varying between 55 and 78% (maximal inhibition of cell growth). b, typical photomicrographs (magnification 100times) of Rat1 and Ha-Ras-transformed Rat1 cells grown for 5 days in the presence of solvent or 50 µM FTS or 5 µM FTS.



The change in EJ cell morphology developed rapidly and was apparent already 24 h to 48 h after drug treatment (Fig. 6). Reversibility of the effect of FTS on EJ cell growth was evident in experiments in which the cells were exposed to 25 µM FTS for 48 h, then washed and replated in a drug-free medium. The number of cells in the replated cultures (determined 5 days after replating) presented 90 ± 7% (n = 4) of controls. These results are also consistent with lack of FTS-induced cytotoxicity in EJ cells.


Figure 6: FTS alters the morphology of EJ cells. EJ cells were plated at a density of 2 times 10^3 cells/well in 24-well plates and 24 h later received either 0.1% Me(2)SO (control) or 25 µM FTS. The cells were then photomicrographed either 24 h (a and b) or 48 h (c and d) following the treatments.



Fig. 4, d and e, shows MTT-stained EJ cells that were grown in the absence and in the presence of 10 µM FTS. Despite the reduction in cell number, most of the EJ cells were stained by MTT. Trypan blue staining confirmed that FTS did not cause death of the EJ cells. Thus, the observed reduction in the spectrophotometrically determined MTT staining of the FTS-treated EJ cultures (Fig. 4f) probably reflects the reduced number of cells and not cell death. In separate experiments, it could be demonstrated that [^3H]thymidine incorporation was reduced by 55% when EJ cells were grown for 24 h in the presence of 25 µM FTS.

While FTS (up to 50 µM) had no effect on the growth or morphology of non-transformed Rat1 cells ( Fig. 4and Fig. 5), it did block their mitogenic response to basic fibroblast and epidermal growth factors (Table 2). We conclude that FTS can affect growth signaling either when Ras is activated transiently through a tyrosine-kinase growth factor-receptor pathway (39) or when it is activated constitutively. This conclusion was supported by experiments showing that the growth of NIH3T3 cells transformed by the Ras-activating tyrosine-kinase ErbB2 oncogene(40) , and of human endometrial carcinoma HEC1A cells that express activated K-Ras(34) , was inhibited by FTS (Table 2). In contrast, growth of cells transformed by the v-Raf oncogene, whose normal cellular form c-Raf1 is recruited by Ras (41, 42) to the plasma membrane where it is activated (43) , or of cells transformed by the nuclear T-antigen oncogene(31) , was not affected by up to 25 µM FTS (Table 2).

Taken together, the results suggest that FTS may directly affect the membrane anchorage of Ras and thereby interfere with Ras-Raf communication. This implies that FTS alters the distribution of cellular Ras. To test this possibility, EJ cells were exposed to 25 µM FTS for 12 h, and the amounts of Ras present in the particulate (P) and in the cytosolic (S) fractions of the cells were determined by immunoprecipitation combined with immunoblotting (see ``Experimental Procedures''). In agreement with earlier studies(19) , Ras was found to be localized predominantly to the P fraction of the untreated Ha-ras-transformed cells (Fig. 7). In contrast, most of the Ras in the FTS-treated cells was localized to the S fraction (Fig. 7).


Figure 7: Cellular distribution of Ras proteins in FTS-treated EJ cells. EJ cells were plated at a density of 2 times 10^6 cells/75-cm^2 flask and received 24 h later either 0.1% Me(2)SO (control) or 25 µM FTS. 12 h later, Ras proteins were immunoprecipitated by antibody Y13-259 from 150 µg of protein of the P fractions and from the equivalent amount of protein of the S fractions of the cells. The immunoprecipitated proteins were then subjected to SDS-PAGE followed by immunoblotting and ECL as detailed under ``Experimental Procedures.'' The film was exposed 5 min.




DISCUSSION

The results of this study indicate that the farnesylated rigid carboxylic acid derivative FTS is a potent competitive inhibitor of the PPMTase (K(i) = 2.6 µM) in cell-free systems. In such systems, FTS can inhibit methylation of added synthetic substrates, such as AFC and added Ras, and methylation of endogenous proteins.

Unlike in cell-free systems, in intact cells FTS is a relatively weak inhibitor of methylation. It is possible that FTS crosses the plasma membrane with low efficacy, perhaps due to its carboxyl moiety. Alternatively, the PPMTase in intact cells, unlike the enzyme in broken cells, may be partially protected from interactions with exogenously added farnesyl derivatives. Other possibilities, such as cell-derived formation of inactive FTS metabolites or induction of PPMTase, cannot be ruled out. Whatever the cause, it is clear that FTS may be a useful tool for studies of PPMTase in cell-free systems but not for studies of methylation of prenylated proteins in intact cells. To achieve significant inhibition of methylation of such proteins in the cells, concentrations higher than 100 µM would be required. This, however, could be an advantage for studying interactions at relatively low FTS concentrations with farnesylcysteine recognition domains other than the one known in the PPMTase.

Such recognition domains for farnesylcysteine are likely to be critical for the activity of Ras oncoproteins, since their carboxyl-terminal farnesylcysteine, but not in its carboxymethylated form(44) , is essential for membrane anchorage and transforming activity(10, 19, 23) . Similarities between farnesylysteine domains in Ras targets and in the PPMTase may therefore allow farnesylcysteine mimetics independently to inhibit both carboxylmethylation and Ras-dependent cell growth. This is demonstrated here with FTS, which inhibited the growth of Ha-ras-transformed Rat1 cells and reversed their transformed morphology at concentrations (0.1-10 µM) lower than those required to inhibit protein methylation. FTS is therefore one example of a farnesyl derivative that may actually bind to a distinctive farnesylcysteine recognition domain with a higher affinity than its affinity for the PPMTase. This possibility is strengthened by the demonstrated effect of FTS on Ras localization (Fig. 7) and by recent results obtained in a related study with human platelets(24) . In that case, it was demonstrated that the PPMTase substrate, AFC, and farnesylcysteine derivatives that do not interact with the enzyme can all inhibit platelet aggregation(24) .

The possibility that aside from inhibiting Ras membrane association, FTS may also affect the interaction of proteins other than Ras with their own targets cannot be ruled out. In such a case, parameters other than Ras signaling would be affected by FTS. Additional experiments are required to test this possibility and to examine whether, for example, the effects of FTS on cell morphology and on cell growth are separable, as in the case of the farnesyltransferase inhibitor L-739,749(45) . The latter was found to induce morphological reversion of ras-transformed Rat1 cells and to inhibit their anchorage-independent growth by a mechanism that is unrelated to inhibition of Ras processing yet involves regulation of the actin cytoskeleton(45) . Inhibition of the anchorage-dependent growth by L-739,749 appears, however, to correlate with the inhibition of Ras processing(45) . Because the effects of FTS on EJ cell morphology and on Ras localization are both relatively fast (apparent within 24 h or less) and because the inhibition of DNA synthesis by FTS is also detected after 24 h of treatment, we cannot tell whether or not the effects of FTS on cell morphology and on cell growth are separable.

The lack of FTS toxicity at concentrations that effectively inhibit Ras-dependent cell growth may be attributable to its low efficacy in inhibiting the processing of prenylated proteins in intact cells. In addition to Ras, many of the proteins involved in regulatory mechanisms in mammalian cells are prenylated. In those that undergo both prenylation and methylation, prenylation occurs first(16, 17, 18, 19, 20, 23, 44) . Therefore, despite its ability to inhibit methyltransferase in vitro, FTS probably does not affect processing steps that precede methylation in intact cells, and as shown here, even Ras methylation is only weakly affected. Our results then suggest that the consequence of FTS action is a diminution in the levels of Ras in the membranes with a concomitant accumulation of fully processed Ras in the cytosol.

In this respect, the action of FTS is in sharp contrast to the actions of farnesyltransferase inhibitors(29, 46, 47) , which inevitably prevent all of the covalent modifications in the Ras CAAX box (C = cysteine, A = aliphatic and, X = any amino acid). It is not unlikely that FTS, and perhaps other farnesyl derivatives of rigid carboxylic acids(26) , interact specifically with Ras farnesylcysteine anchorage sites. High-affinity binding of FTS to such sites would probably affect proper anchoring of Ras in the plasma membrane and thereby disrupt the Ras-dependent activation of c-Raf1. Indeed, our results suggest that FTS affects membrane-anchorage of Ras and inhibits the growth signaling of tyrosine kinases (epidermal and basic fibroblast growth factor receptors and Erb-B2), which use Ras-Raf1 to recruit the mitogen-activated protein kinase cascade(39, 40, 43) . This and the lack of an effect on cells transformed by the constitutively activated v-Raf strongly suggest that FTS indeed interferes with tyrosine kinase-activated Ras-Raf communication. In this sense, the consequences of FTS actions would be similar to those of CAAX farnesyltransferase inhibitors. Indeed, neither farnesyltransferase inhibitors (29, 46) nor FTS affected the growth of untransformed fibroblasts grown in the absence of tyrosine kinase-receptor ligands. We report here that the unstimulated growth of cell types other than fibroblasts is also not affected by FTS. Together, our results suggest that FTS can selectively affect Ras-dependent cell growth but not Ras-independent cell division.

It is important to note, however, that the CAAX farnesyltransferase inhibitor BZA-5B does not block the epidermal growth factor-induced activation of the mitogen-activated protein kinase cascade in Rat1 cells(47) . This would imply that BZA-5B, unlike FTS, does not block the growth factor's mitogenic effect. Two alternative explanations have been proposed for the observed resistance of Rat1 cells to BZA-5B(47) . The one assumes that this drug does not affect farnesylation of endogenous K- or N-Ras and the other that the cells may use alternative, Ras-independent signaling pathways. FTS is not expected to be selective toward one or other types of Ras, as it only mimics the common structure of their farnesylcysteine. Therefore, usage of Ras-independent pathways is probably the more likely explanation for the resistance of unstimulated Rat1 cells to FTS. Because of the different actions of FTS and CAAX farnesyltransferase inhibitors, it will be interesting to examine whether these two types of inhibitors of Ras oncoprotein-dependent cell growth can act synergistically. Our results suggest potential uses for FTS and its analogs (26) in the characterization of farnesylcysteine recognition domains and in the design of treatments of Ras-dependent cancers.


FOOTNOTES

*
This work was supported by The Israel Cancer Research Foundation and by the SAFAHO Fund. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore by hereby marked ``advertisement'' in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

§
To whom all correspondence should be addressed. Tel.: 972-3-6409699; Fax: 972-3-6407643.

(^1)
The abbreviations used are: PPMTase, prenylated protein methyltransferase; FTS, S-trans,trans-farnesylthiosalisylic acid; AFC, Nacetyl-S-trans,trans-farnesyl-L-cysteine; AdoMet, S-adenosyl-L-methionine; MTT, (3-(4,5,dimethylthiosol-2-yl))-2,5-diphenyltetrazolium bromide; PAGE, polyacrylamide gel electrophoresis; CHE cells, Chinese hamster embryonic cells.


ACKNOWLEDGEMENTS

We thank Y. Yarden for the EJ and RB-22 cells, S. Lavi for CO60 cells, S. Gutkind for v-Raf-transformed cells, and S. Smith for editorial assistance.


REFERENCES

  1. Clarke, S. (1992) Annu. Rev. Biochem. 61,355-386 [CrossRef][Medline] [Order article via Infotrieve]
  2. Haklai, R., and Kloog, Y. (1990) Biochem. Pharmacol. 40,1365-1372 [Medline] [Order article via Infotrieve]
  3. Yamane, H. K., and Fung, B. K. K. (1989) J. Biochem. (Tokyo) 261,20100-20105
  4. Stephanson, R. C., and Clarke, S. (1990) J. Biol. Chem. 265,16248-16254 [Abstract/Free Full Text]
  5. Volker, C., Miller, R. A., McCleary. W. R., Rao, A., Poenie, M., Backer, J. M., and Stock, J. B. (1991) J. Biol. Chem. 266,21515-21522 [Abstract/Free Full Text]
  6. Tan, E. W., Perez-Sala, D., Canada, F. J., and Rando, R. R. (1991) J. Biol. Chem. 266,10719-10722 [Abstract/Free Full Text]
  7. Ashby, M., Errada, P. R., Boyartchuk, V. L., and Rine, J. (1993) Yeast 9,907-913 [Medline] [Order article via Infotrieve]
  8. Sapperstein, S., Berkower, C., and Michaelis, S. (1994) Mol. Cell. Biol. 14,1438-1449 [Abstract]
  9. Clarke, S., Vogel, J. P., Deschenes, R. J., and Stock, J. (1988) Proc. Natl. Acad. Sci. U. S. A. 85,4643-4647 [Abstract]
  10. Gutierrez, L., Magee, A. I., Marshall, C. J., and Hancock, J. F. (1989) EMBO J. 8,15572-15576
  11. Backlund, J. P. S., Simonds, W. F., and Spiegel, A. M. (1990) J. Biol. Chem. 265,15572-15576 [Abstract/Free Full Text]
  12. Fukada, Y., Takano, T., Ohguro, H., Yoshizawa, T., Akino, T., and Shimonishi, Y. (1990) Nature 346,658-660 [CrossRef][Medline] [Order article via Infotrieve]
  13. Fung, B. K-K., Yamane, H. K., Ota, I. M., and Clarke, S. (1990) FEBS Lett. 260,313-317 [CrossRef][Medline] [Order article via Infotrieve]
  14. Maltese, W. A., Sheridan, K., Repko, E. M., and Erdman, R. A. (1990) J. Biol. Chem. 265,2148-2155 [Abstract/Free Full Text]
  15. Philips, M. B., Pillinger, M. H., Staud, R., Volker, C., Rosenfeld, M. E., Weissmann, G., and Stock, J. B. (1993) Science 259,977-980 [Medline] [Order article via Infotrieve]
  16. Glomset, J. A., Gelb, M. H., and Farnsworth, C. C. (1990) Trends. Biochem. Sci. 15,139-142 [CrossRef][Medline] [Order article via Infotrieve]
  17. Maltese, W. A. (1990) FASEB J. 4,3319-3328 [Abstract/Free Full Text]
  18. Brown, M. S., and Goldstein, J. L. (1993) Nature 366,14-15 [CrossRef][Medline] [Order article via Infotrieve]
  19. Hancock, J. F., Magee, A. I., Childs, J. E., and Marshall, C. J. (1989) Cell 57,1167-1177 [Medline] [Order article via Infotrieve]
  20. Marshall, C. J. (1993) Science 259,1865-1866 [Medline] [Order article via Infotrieve]
  21. Araki, S., Kaibuchi, K., Sasaki, T., Hata, Y., and Takai, Y. (1991) Mol. Cell. Biol. 11,1438-1447 [Medline] [Order article via Infotrieve]
  22. Anderegg, R. J., Betz, R., Carr, S. A., Crabb, J. W., and Duntze, W. (1988) J. Biol. Chem. 263,18236-18240 [Abstract/Free Full Text]
  23. Casey, P. J., Solski, P. A., Der, C. J., and Buss, J. E. (1989) Proc. Natl. Acad. Sci. U. S. A. 86,8323-8327 [Abstract]
  24. Ma, Y.-T., Shi, Y.-Q., Lim, Y. H., McGrait, S. H., Ware, A., and Rando, R. R. (1994) Biochemistry 33,5414-5420 [Medline] [Order article via Infotrieve]
  25. Ben-Baruch, G., Paz, A., Marciano, D., Egozi, Y., Haklai, R., and Kloog, Y. (1993) Biochem. Biophys. Res. Commun. 195,282-288 [CrossRef][Medline] [Order article via Infotrieve]
  26. Marciano, D., Ben-Baruch, G., Marom, M., Egozi, Y., Haklai, R., and Kloog, Y. (1995) J. Med. Chem. 38,1267-1272 [Medline] [Order article via Infotrieve]
  27. Haklai, R., Lerner, S., and Kloog, Y. (1991) Neuropeptides 24,11-25
  28. Land, H., Parada, L. F., and Weinberg, R. A. (1983) Nature 304,596-602 [Medline] [Order article via Infotrieve]
  29. James, G. L., Goldstein, J. L., Brown, M. S., Rawson, T. E., Somers, T. C., McDowell, R. S., Crowley, C. W., Lucas, B. K., Levinson, A. D., and Marsters, J. C. (1993) Science 260,1937-1942 [Medline] [Order article via Infotrieve]
  30. Reiss, Y., Goldstein, J. L., Seabra, M. C., Casey, P. J., and Brown, M. S. (1990) Cell 62,81-88 [Medline] [Order article via Infotrieve]
  31. Lavi, S. (1981) Proc. Natl. Acad. Sci. U. S. A. 78,6144-6148 [Abstract]
  32. Xu, N., Bradley, L., Ambdukar, I., and Gutkind, J. S. (1993) Proc. Natl. Acad. Sci. U. S. A. 90,6741-6745 [Abstract]
  33. Peles, E., Ben-Levy, R., Or, E., Ulrich, A., and Yarden, Y. (1991) EMBO J. 10,2077-2086 [Abstract]
  34. Enomoto, T., Enowe, M., Pernantoni, A. O., Terakawa, N., Tanizawa, O., and Rice, J. M. (1990) Cancer Res. 50,6139-6145 [Abstract]
  35. Audus, K. L., and Borchardt, R. T. (1987) Ann. N. Y. Acad. Sci. 507,9-18 [Abstract]
  36. D'Mello, S. R., Galli, C., Ciotti, T., and Calssano, P. (1993) Proc. Natl. Acad. Sci. U. S. A. 90,10989-10993 [Abstract]
  37. McCarthy, K. D., and de Vellis, J. (1980) J. Cell Biol. 85,890-902 [Abstract]
  38. Mosmann, T. (1983) J. Immunol. Methods 65,55-63 [CrossRef][Medline] [Order article via Infotrieve]
  39. Schlessinger, J., and Ulrich, A. (1992) Neuron 9,383-391 [Medline] [Order article via Infotrieve]
  40. Ben-Levy, R., Paterson, H. F., Marshall, C. J., and Yarden, Y. (1994) EMBO J. 13,3302-3311 [Abstract]
  41. Leevers, S. J., Paterson, H. F., and Marshall, C. J. (1994) Nature 369,411-414 [CrossRef][Medline] [Order article via Infotrieve]
  42. Stokoe, D., Macdonald, S. G., Cadwallader, K., Symons, M., and Hancock, J. F. (1994) Science 264,1463-1467 [Medline] [Order article via Infotrieve]
  43. Zhang, X., Settleman, J., Kyriakis, J. M., Takeuchi-Suzuki, E., Elledge, S. J., Marshall, M. S., Bruder, J. T., Rapp, U. R., and Avruch, J. (1993) Nature 364,308-313 [CrossRef][Medline] [Order article via Infotrieve]
  44. Kato, K., Cox, A. D., Hisaka, M. M., Graham, S. M., Buss, J. E., and Der, C. J. (1992) Proc. Natl. Acad. Sci. U. S. A. 89,6403-6407 [Abstract]
  45. Prendergast, G. C., Davide, J. P., deSolms, S. D., Giuliani, E. A., Graham, S. L., Gibbs, J. B., Oliff, A., and Kohl, N. E. (1994) Mol. Cell. Biol. 14,4193-4202 [Abstract]
  46. Kohl, N. E., Mosser, S. D., deSolms, S. J., Giuliani, E. A., Pompliano, D. L., Graham, S. L., Smith, R. L., Scolnick, E. M., Oliff, A., and Gibbs, J. B. (1993) Science 260,1934-1937 [Medline] [Order article via Infotrieve]
  47. James, G. L., Brown, M. S., Cobb, M. H., and Goldstein, J. L. (1994) J. Biol. Chem. 269,27705-27714 [Abstract/Free Full Text]

©1995 by The American Society for Biochemistry and Molecular Biology, Inc.